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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC46
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
<-----------
ARR10
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR14(2)
------>
ZmHOX2a(1)
--------->
AGP1
<---------
ANAC58
--->
CCA1(2)
<---------
AGP1
<---------
ANAC58
---
ARR14(2)
<---------
ARR14(3)
-->
ARR14(2)
--------->
ZAT2
<---------
ANAC58
---
ARR11(3)
--------->
At4g35610
<---------
ZAT2
-->
ARR11(3)
--------->
At4g35610
------>
NtERF2
<-
--
HSFB2a(1)
--------->
At4g35610
--------->
ARR14(3)
<----
-->
ARR10
<---------
At4g35610
<---------
ARR14(2)
<-----
tgtgccagtccttcttgcattagaactacagctaaatcagcactagctgcaagatctgaggcctgcttgagtgtatcaagagccagtgagtcccaatttt
21611800
------>
ZmHOX2a(1)
<---------
ICU4
<---------
ATHB12
---------
------>
MYB83
<---------
ANAC46
--------->
At4g35610
------>
MYB46(1)
--------->
LBD16
--------->
YAB1
<---------
At4g35610
--------->
AtMYB61
--------->
LBD16
--------->
AHL20(2)
--------->
MYB46(3)
<---------
LBD16
---------
DOF2
---------->
DOF2
------->
TEIL
--------->
ARR11(3)
-------
GT1
--------->
DAG2
--------->
ZAT18
<---------
ARR11(3)
-----
------
GT1
---------->
DOF2
---------->
DOF2
<---------
ALFIN1
--------->
YAB1
<--------
cctttctcaataaaaaaggtcgtttaagctcaatctccaaagtatggaatgcaccaatccttacatgctcgttctccatgatattcttcccgcgtatgcg
21611900
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
RVE1(1)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
LBD16
<---------
ALFIN1
<---------
LBD16
<----------
DOF2
<---------
ZAT18
<-------
TEIL
<-----------
ARR10
------>
NtERF2
--------->
ZAT18
<-------
MYC3
--------->
ARR14(3)
--------->
DEAR3(1)
--------->
AtMYB61
------->
MYC3
<---------
ARR14(3)
>
ARR14(2)
--------->
YAB1
<-------
MYC2
--------->
ARR14(2)
---->
LBD16
<---------
YAB1
------>
ZmHOX2a(1)
------->
MYC2
---------->
DOF2
<----
-
ARR14(2)
<----------
DOF2
<---------
ALFIN1
<-----------
GT1
----------->
HVH21
<------
cataacatcgccgtctttgtcatagtccacctcctcaacttgtacttctagcttaagtttaacacgttcagtccgggtgaaagatcttttctttccaagg
21612000
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<----------
DOF2
<---------
DAG2
----
------>
MYB46(1)
------>
NtERF2
------>
MYB83
--------->
LBD16
<---------
MYB111(2)
<---------
LBD16
--------->
AtMYB61
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ALFIN1
<---------
ARR14(2)
<---------
ANAC58
--------->
MYB46(3)
--------->
ARR14(2)
<---------
ANAC58
<---------
MYB111(1)
--------->
ZAT6
------
-----
ARR11(3)
--------->
MYB46(3)
<-----------
GT1
<------
---
TOE1(2)
--------->
REM1(1)
---------->
DOF2
--------->
ZAT14
---------
tatttgctttctattcgacttagcgatggagtcgagtctcttccttcaccaccaacttttctgaaagtgatagccattacactatcctccgggccaatca
21612100
<---------
At4g35610
------>
ZmHOX2a(1)
<-------
TEIL
--------->
At4g35610
--------->
ARR14(2)
--------->
ZAT18
<---------
TCP16(1)
<---------
ZAT14
--------->
LBD16
--------->
ATHB12
--------->
ARR14(2)
<---------
ANAC58
<---------
ATHB12
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ANAC46
<---------
ANAC58
------->
GT1
===================
HOX2a_HOX2a
--------->
HSFB2a(2)
<---------
ANAC58
--->
YAB1
<---------
ARR11(3)
<-----------
GT1
<---------
ANAC58
<-
---
ATHB12
--------->
ARR11(3)
--------->
YAB1
<---------
ANAC58
<---------
ANAC58
<--
>
WOX13(1)
--------->
GLK1(1)
------>
NtERF2
<---------
LBD16
<---------
ARR11(3)
<--------
ggttataagtataccagagatcatccgagtcctctgccatcatcttaacgcttccgggtccattacgaacaaaatccttgcgaatgattttcat
ctttca
21612200
--------->
YAB1
--------->
MYB52(1)
<---------
MYB52(2)
<---------------
AGL15
--------------->
AGL15
<-----------
GT1
<---------
CCA1(1)
<---------
RVE1(1)
<------
MYB83
<---------
ARR11(3)
--------->
ARR14(2)
<---------
SPL7
----------->
HVH21
--------->
ARR11(3)
<---------
ARR14(2)
<---------
TOE2(3)
--------->
WOX13(1)
<---------
TOE1(3)
--------->
GLK1(2)
------>
ZmHOX2a(2)
<---------
ATHB12
--------
ARR11(3)
--------->
ZAT6
<---------
KAN4(2)
<------------
CBF
--------->
WOX13(1)
----
ZmHOX2a(1)
----------------->
AGL2
--------->
ETT(2)
<------
MYB46(1)
------------>
CBF
--
DOF2
<---------
TOE2(3)
<---------
GLK1(2)
<---------
ETT(2)
<--------
P
------------>
CBF
ggatttttgaaggtattttccactaacagaatctgaagaataaactgtcgatcggaaattgtggtagggaatgaagaacaatcaatcgctctgacaagaa
21612300
<-------
TEIL
--------->
CCA1(2)
==============================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<---------
ARR11(3)
<---------
At4g35610
--------->
ARR11(3)
--------->
At4g35610
------>
ZmHOX2a(1)
<---------
MYB52(1)
--------->
LBD16
--------->
TOE2(3)
<---------
ANAC58
<---------
AGP1
----------->
RAV1(2)
--------->
AHL20(2)
<---------
ANAC58
<------------
CBF
------>
ZmHOX2a(2)
<
--------->
AHL20(2)
<----------
DOF2
<---------
YAB1
<---------
GLK1(1)
-----
----------->
GT1
---------->
DOF2
<---------
At4g35610
<---------
ARR11(3)
<----------
gagaagaaaaaataaaaacttaaagtaaacttttgcttaaattaagctgttattgatctgaagaaatagacttgatctcctgagatatacatatttatag
21612400
<-----------
GT1
<---------
ARR14(2)
<---------
ANAC55(2)
--
--------->
ANAC55(2)
---
<------
ZmHOX2a(1)
<---------
ANAC46
<--
--------->
TOE1(2)
<---------
LBD16
<---
<------
ZmHOX2a(1)
<-----------
GT1
<------------
CBF
<---
---------
STY1(2)
<---------
HSFB2a(2)
--------->
ARR14(2)
--------->
ANAC55(2)
<-----
---->
STY1(2)
--------->
HSFB2a(2)
------->
TEIL
<------------
CBF
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-
TBP
---------->
DOF2
<---------------------
WRI1
<----------
DOF2
<---------
ANAC55(2)
<------
ctagctataaagcttacataagtcgtctaggaaaactaggaaacgtattttccttttctacattgttaagtattggggatagagattaatctcattagga
21612500
<---------
ARR11(3)
--------->
ARR11(3)
------>
ZmHOX2a(1)
<----------
DOF2
------->
KAN4(2)
<-----------
GT1
------>
KAN4(1)
<---------
ARR11(3)
<---------
YAB1
-------
KAN4(1)
--------->
ARR11(3)
--------->
AHL20(2)
------
KAN4(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(1)
------
YAB1
<---------
ICU4
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ICU4
----
-
ZmHOX2a(1)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ICU4
<---
---
YAB1
<---------
CCA1(2)
------>
ZmHOX2a(1)
<---------
CCA1(2)
--------->
AHL20(2)
xxxxxxxx
ttattcctatatatcttctgattatgtcctatattttagggactagagtatatcttatacgatgtctctcttgtataaatattatactttgtgaatcaat
21612600
<-
---
---
<---------
ZAT18
--------->
YAB1
-----
--------->
ZAT18
<-------
GAMYB
-----
<---------
ZAT14
<---------
MYB46(3)
--------
--------->
ZAT14
------>
ZmHOX2a(1)
<---------
ARR11(3)
<----
----->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
MYB111(2)
---------
------
AHL20(2)
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
YAB1
<-------
xxxxxxxxxxxxxxx>
smallRNA(si3)
<----------
DOF2
--------->
TOE2(3)
--------->
ARR11(3)
<----
aaaatcaagttagtgcaatatctaattctacatagtttctttatttcattagagcatccttatccataggttgttaacaatatcataagaactattaaaa
21612700
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AGI:
At3g58390.1
Description:
eukaryotic release factor 1 family protein / eRF1 family protein. similar to PEL1 (PELOTA), translation release factor [Arabidopsis thaliana] (TAIR:AT4G27650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23009.1); contains InterPro domain Probable translation factor pelota; (InterPro:IPR004405); contains InterPro domain eRF1 domain 2 (InterPro:IPR005141); contains InterPro domain eRF1 domain 3 (InterPro:IPR005142); contains InterPro domain eRF1 domain 1 (InterPro:IPR005140)
Range:
from: 21611007
to: 21612194
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.