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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR14(2)
--------->
ARR14(2)
--------->
LBD16
<---------
LBD16
----------
<---------
LBD16
------->
GAMYB
-----
<---------
ARR11(3)
<---------
MYB52(2)
--------->
ARR11(3)
<---------
CCA1(2)
<---------
MYB55(2)
<---------------
AGL15
--------->
ANAC58
<---------
MYB46(2)
--------------->
AGL15
--------->
ANAC58
<---------
MYB111(2)
------>
GLK1(2)
--------->
GLK1(2)
------>
ZmHOX2a(1)
--------->
MYB46(3)
---
----
YAB1
----------------------->
TaNAC69(2)
<-----------
GT1
-------->
P
--------
---
TOE1(2)
----------->
ARR10
<-----------
ARR10
<----------
DOF2
<---------
MYB111(1)
<
attctagattgagaagataatccgggcacggttctactcctcatacctctgaacat
atgcttcaagtctttactacttgccaactaccaaaaaaaaagat
20931900
========================
HOX2a_HOX2a
=========================
HOX2a_HOX2a
--------->
CCA1(2)
====================
HOX2a_HOX2a
------->
TEIL
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
LBD16
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
HSFB2a(2)
=====================
HOX2a_HOX2a
XXXXXXXXXXXXXXXXXXXX>
MIR852
--------->
GLK1(2)
<---------
ARR11(3)
>
DOF2
<---------
HSFB2a(2)
----------->
GT1
------>
ZmHOX2a(2)
---->
CCA1(2)
<---------
ARR14(2)
----------->
HVH21
<---------
AGP1
------->
DOF2
--------->
ARR14(2)
<-----------
HVH21
--------->
ARR11(3)
--->
GT1
--------->
At4g35610
--------->
ARR14(2)
--------->
AGP1
-----
----------
ID1
<---------
At4g35610
<---------
ARR14(2)
---------->
DOF2
<------
ZmHOX2a(1)
-----
aaaagacaagcacttcagctcaaatccagaactcaagaacctgtaacaggaaaaatcaaagatctaagagagagagagaggaagaagatgagaagtcacc
20932000
<<<<
<------
MYB83
--------->
At4g35610
<---------
MYB46(3)
------>
ZmHOX2a(2)
<------
MYB46(1)
<------
ZmHOX2a(2)
----------->
GT1
--------->
GLK1(1)
<------
ZmHOX2a(1)
<---------
At4g35610
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
<---------
ARR14(2)
----------->
HVH21
<---------
TOE2(3)
--------->
ARR11(3)
---->
TOE1(3)
<------
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ANAC58
<---------
ARR11(3)
<
---->
TOE2(3)
--------->
ALFIN1
<---------
GLK1(2)
<---------
ANAC58
<-------------------
ttagaacggataatggagaggagcctaggtgaaggtgaagaatctgaggatggttcaaaagttttcttggtagaagaagactgggatctgctctgtttct
20932100
------
------
--------->
ATHB12
------
<---------
MYB46(3)
--------->
ANAC46
<---------
YAB1
--------->
ANAC58
<------
MYB83
---------->
ID1
<----------
DOF2
<------
MYB46(1)
<----------
DOF2
--------->
LBD16
================
--------->
YAB1
--------->
ZAT6
------>
ZmHOX2a(2)
--------->
HSFB2a(2)
================
<---------
ICU4
<---------
MYB59
--------->
ARR11(3)
<---------
HSFB2a(2)
================
<---------
YAB1
<---------
WOX13(1)
<---------
ARR11(3)
<---------
LBD16
------>
ZmHOX2a(2)
<<<<<
TBF1
<---------
AtMYB61
--------->
YAB1
<----------
DOF2
<---------
ARR11(3)
<<<<<<<<
TBF1
--------->
MYB46(2)
<---------
YAB1
<----------
DOF2
--------->
ARR11(3)
-----
ANAC81
<---------
MYB46(3)
--------->
At4g35610
<-----------
GT1
<----------
DOF2
--------->
ANAC58
tcttcttcatcatggtttggtgattgacttaactctgatgaatgatctttttcttttttctttctgggaataaaactttgttgatgatctttcaagcaag
20932200
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(1)
================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
===================================
HOX2a_HOX2a
<---------
WRKY12
<------
ZmHOX2a(1)
<---------
YAB1
<---------
WRKY38(1)
--->
ANAC58
--------->
CCA1(2)
--------->
ICU4
--->
ANAC58
<---------
ARR11(3)
<------
ZmHOX2a(2)
--------->
WRKY18(1)
------->
GAMYB
--->
ANAC46
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ICU4
<-----------
GT1
================
HOX2a_HOX2a
--------->
At4g35610
--------->
YAB1
<---------
TOE2(3)
=============
HOX2a_HOX2a
------->
TEIL
<---------
YAB1
<---------
TOE1(3)
<
==========
HOX2a_HOX2a
--------->
AHL20(2)
--------->
YAB1
<---------
REM1(1)
<--
caagtaggaggaggagatatattattatatgaatcagatcaggcactataatgaataatggtcaaggtgatgaaggttttaacagacttgtttattgact
20932300
<------------
CBF
<---------
AtLEC2
------>
ZmHOX2a(2)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
AHL20(2)
<------
ZmHOX2a(2)
*
TSS
<-----------
GT1
<---------
ARR11(3)
--------->
AHL20(1)
--------->
AGP1
--------->
ARR14(2)
<----------
DOF2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ANAC58
<---------
ARR14(2)
<------------
CBF
----
<---------
ANAC58
<----------
DOF2
--------->
ARR11(3)
--------->
ATHB12
<-------
---------
AHL20(2)
<---------
AHL20(2)
<---------
AGP1
<---------
YAB1
--------
-------
YAB1
<---------
AHL20(1)
----------->
ARR10
<-----------
GT1
<-------
TEIL
attattttgcttctttc
aa
tttatttcttttcaagaaaattaagatctgagagttgcattgagtagtcaccattggatttggaagttgaggtccagttcc
20932400
<---------
HSFC1(2)
<---------
HSFC1(1)
--------->
ANAC58
<---------
ICU4
------>
ZmHOX2a(2)
<---------
YAB1
<----------
DOF2
<------
ZmHOX2a(2)
--------->
AHL20(2)
<---------
DAG2
--------->
ATHB12
<---------
ARR14(2)
<---------
AHL20(2)
<---------
ANAC58
<---------
TOE2(3)
--------->
ARR14(2)
<---------
AHL20(1)
<---------
ANAC58
<-----------
GT1
<---------
ARR11(3)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ZAT6
--------->
ARR11(3)
<----------
DOF2
<---------
ARR11(3)
-->
ZmHOX2a(1)
<----------
DOF2
--------->
HSFC1(2)
--------->
HSFB2a(2)
<-----
--
ARR14(2)
<---------
WRKY12
--------->
ANAC58
--------->
YAB1
--------->
ARR14(2)
<-
->
ARR14(2)
---------->
DOF2
<---------
GLK1(1)
<---------
DAG2
<---------
HSFB2a(2)
<------
tctagtattaacgatttggattttgaaaagtcaactttggagatcgccaagaaacatccctttattataatttctagatcaaatttgcttttttttttta
20932500
<---------
AHL20(2)
--------->
ATHB12
--------->
ICU4
<---------
YAB1
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
ICU4
<---------
ICU4
<---------
ARR14(2)
<---------
YAB1
<---------
YAB1
<
<---------
AHL20(2)
--------->
ICU4
--------->
ICU4
---
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
YAB1
<--
----
AHL20(2)
------->
TEIL
<---------
ATHB12
--------->
AHL20(2)
---------->
DOF2
<--
----------
GT1
--------->
ARR14(2)
<----------
ID1
--------->
YAB1
<---------
ICU4
---
---
AHL20(2)
<---------
CCA1(2)
---------->
DOF2
--------->
YAB1
<---------
ATHB12
---------->
DOF2
ttttctgtttttaatttgtttgtatctgttttattcgaagaaagaacaaatcactcatcatcatgatttaatcataattttttaaaaagaaagaaatcaa
20932600
<---------
At4g35610
<-----------
GT1
------->
TEIL
<---------
YAB1
--------->
TOE1(3)
-------
TEIL
<-------
MYC3
--------->
TOE2(3)
-------
---->
MYC2
------->
MYC3
<---------
ANAC55(2)
<---------
ANAC58
-----
MYC2
--------->
DAG2
----------->
GT1
<---------
ANAC46
-----
MYC3
---------->
DOF2
<----------
DOF2
<-------
TEIL
<---------
ANAC58
---->
MYC3
----------->
RAV1(1)
<---------
WRKY18(1)
----------->
GT1
<---------
ANAC55(1)
cgtgcatcttactaatttgccaacataaagcatatggttattgaccaaaaccctttcgagtttgaaaaatacgttaaactttcttctataccgtgtttga
20932700
<------
ZmHOX2a(1)
---------->
DOF2
<---------
TOE1(3)
<---------
AHL20(2)
<---------
ARR14(2)
<---------
TOE2(3)
----------->
GT1
----------->
GT1
--------->
ARR14(2)
<-----------
RAV1(2)
--------->
At5g28300
--------->
AHL20(2)
--------->
AHL20(2)
<---------
MYB46(3)
----------->
GT1
--------->
TOE1(3)
<---------
AHL20(2)
<
---->
HVH21
--------->
ANAC46
--------->
TOE2(3)
--------->
YAB1
---------->
DOF2
caggtttgttcaggttttcaaattgaagaacacacagtaatatagaaaataacattaaaatgtaaaaggattaataaaacaaatatgcacaagaagcact
20932800
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AGI:
At3g56408.1
Description:
other RNA
Range:
from: 20926476
to: 20932319
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At3g56410.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61670.1); similar to hypothetical protein Kpol_1058p4 [Vanderwaltozyma polyspora DSM 70294] (GB:XP_001645325.1)
Range:
from: 20927151
to: 20932317
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.