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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                ----
                                                                                               -----
                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   ------
                   <---------At4g35610                                                      <-------
                  <-----------RAV1(1)                                                      ---------
               --------->GLK1(2)                <---------ATHB12                           ------>ZmHOX2a(2)
           --------->YAB1                 --------->AtLEC2                                 <--------
          <---------ATHB12    <---------At4g35610                                        <---------ARR14(2)
        --------->WOX13(1)    --------->At4g35610                        <---------CCA1(2)<------ZmHOX2a(2)
      ------>ZmHOX2a(1)<------NtERF2      ------>MYB46(1)            --------->ANAC58    --------->ARR14(2)
     --------->TOE2(3)------>NtERF2       ------>MYB83               --------->ANAC58   <------ZmHOX2a(1)
------ALFIN1  <---------GLK1(2)         --------->AtMYB61   --------->ZAT14    <-----------RAV1(2)
 
cacttcatcctcaatcatattctggtgccaagtagcagccagaccatccaaatgaatagaaactacagacactcgcatctcttcaggtataggatccacc  20320400
                                                         --------->GLK1(1)                         <
                                                    --------->LBD16                          <------
                             ------>ZmHOX2a(1)      ----------->GT1                       <--------ATHB1
                            <---------ANAC55(2)   --------->TOE1(2)                       --------->ATHB12
 <---------AHL20(2)         --------->TOE1(3)   <---------ARR14(2)                       <---------ATHB12
 --------->AHL20(2)         --------->TOE2(3)   --------->GLK1(2)                        <---------YAB1
----->LBD16           --------->MYB46(3)        ------->TEIL                          ------------>ATHB5
---->DEAR3(1)      --------->MYB46(3)           --------->ARR14(2)                   --------->LBD16
--->ANAC46   --------->TOE1(3)                 <---------GLK1(2)                   <---------LBD16 <
--ALFIN1     --------->TOE2(3)               <---------ATHB12             --------->TOE2(3) <-------
>MYB46(3)  ------->TEIL--------->AtMYB61  <---------ALFIN1--------->GLK1(2)    <-----------GT1     <
-ABI4(2)   -------->P-------->P          --------->MYB46(3)         --------->HSFB2a(2)  --------->ICU4
 
gcaaaaaattgatcaaccttaaacaaccattccttaaccttctcaccactgaatctgggaaaatccaacttccctaaccttgttactcccgaatgattgt  20320500
                                  <---------At4g35610
                                  --------->At4g35610
                               <-------GAMYB
                               <---------At4g35610
                              <---------DEAR3(2)
                              <---------MYB46(3)
                              <-----------RAV1(1)
                              --------->MYB52(2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                          =============MYC_MYB       <-------PIF5
                          <---------TGA1a            <-------MYC2
 ----------->HVH21        --------->bZIP60(2)        ------->PIF5                      xxxxxxxxxxxxx
---------ANAC58           --------->ANAC46           ------->MYC2             <---------GLK1(2)
---MYB46(3)               --------->TGA1a            <-------MYC3             --------->ARR14(2)
---------ANAC46           <---------O2               ------->MYC3             <---------ARR14(2)
--WOX13(1)                --------->O2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------GT1
---------ANAC58  --------->ANAC55(2)    <---------At4g35610          <xxxxxxxxxxxxxxxxsmallRNA(i)
 
tagcgtgaccttgccttctcatgtaatccacgtctgttgctgaagcggatgaagcacgagctgtttgatgagtctcacccagatttgactgcttagatgg  20320600
                                            ------>ZmHOX2a(2)
                                          <---------ARR11(3)
                                    <---------ANAC58
                                    <---------ANAC58
                               --------->CCA1(2)
                              --------->ARR11(3)                             ------>ZmHOX2a(2)
           ------>ZmHOX2a(2)  <---------ARR11(3)                             =======================
         <---------ARR14(2)   --------->ARR11(1)  <---------GLK1(2)        --------->ARR14(2)
         --------->ARR14(2)   --------->ARR14(2)  --------->ARR11(3)       <---------ARR14(2)
     <-------MYC2             <---------ARR14(2)  <---------ARR14(2)       <---------ARR11(3)
     ------->MYC2    --------->ARR11(3)   --------->ARR14(2)               --------->ARR11(3)
     ------->MYC3    <---------ARR11(3)   --------->ARR11(3)     ------>ZmHOX2a(2)       -----------
     <-------MYC3  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        --------->ARR11(3)       <-----------HVH21
xxxxxxxxxx>smallRNA(le3)   --------->LBD16<---------ARR14(2)   <---------ARR11(3)    ----------->RAV1(2)
 
agacagcatgtggatcgcctcaaacatctccgagatatggcgctcgatcttcagattttgagcatcgatcttgctctcgatcttctccatctgtgactcc  20320700
                                                  <---------ZAT2
                                                  --------->ZAT2
                                                  --------->At4g35610
                --------->ANAC58               ------>ZmHOX2a(1)          --------->LBD16
                --------->ANAC58               --------->LBD16            <---------HSFB2a(2)     <-
     ------>ZmHOX2a(1)                         =======================HOX2a_HOX2a          ---------
     <---------At4g35610               <---------MYB59                    --------->HSFB2a(2)    ---
 --------->ARR14(2)                   <---------At4g35610      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
============HOX2a_HOX2a   <---------ETT(2)   ----------->RAV1(2)         *TSS       <----------DOF2
>HVH21  <---------At4g35610           --------->At4g35610      <------ZmHOX2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)
 
atcgattcctctgcttctaacgccttctctcgacgagcttgagctaactcctgagctcgagtctcgatcaccatctccgagaaacgtctttgctctgata  20320800
                                               <---------ICU4
                                          ------------>CBF
                                       ---------->DOF2
                             <---------ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
                             ------------>CBF  --------->YAB1
                            --------->ANAC58  <---------ATHB12
                         ------------>CBF--------->ANAC58
                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                      ----------->RAV1(1)--------->ANAC58
                   --------->AtMYB61  --------->AtMYB61                       ----------->GT1
                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------ICU4
                <---------ALFIN1      ------->GAMYB                   --------->YAB1
                --------->ANAC58    -------->P--------->ICU4         --------->ICU4
                --------->ANAC58   --------->WOX13(1)                <---------YAB1
       --------->At5g28300  --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->WOX13(1)     <---------ICU4
      ----------->GT1--------->ANAC46--------->MYB46(3)           --------->ICU4
---------DOF2   --------->ANAC46 <---------ATHB12                <---------ANAC55(2)
-->HVH21   <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC55(2)          <-----
------>TOE2(3)--------->AtMYB61--------->WOX13(1)    --------->MYB46(3)  <-----------GT1      ------
 
cctttaatacagtaaaaccacaccacaacacaatcaatcaaccaaagcaatcatcaacaactccgattacttattattacgatgtaaataacaaatgaaa  20320900
                                         --------->GLK1(2)
                                  --------->ANAC58
                                  --------->ANAC58
                                  <xxxxxxxxxxxxxxxxsmallRNA(s)
                                  --------->ANAC46
                                --------------------->WRI1
                             <-----------GT1
                          <---------ARR14(2)
                          --------->ARR14(2)
                       --------->HSFB2a(2)
                       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                       <---------HSFB2a(2)
       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
    <-------TEIL      <---------LBD16 --------->ANAC58              <---------LBD16
  --------->YAB1   <---------GLK1(1)  --------->ANAC58      <------ZmHOX2a(1)                    xxx
<---------TOE1(2)  --------->GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(i) ------->TEIL                  -----
----GLK1(1)       xxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------At4g35610           ---------->DOF2
--->GLK1(1)  --------->MYB52(1)--------->ANAC46      --------->AtLEC2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
 
tccaatgttcataaaacaagggatttctggattcacctcgcaagaatcgacgttctatgcagaggatgaatctcggaatgttttcagagagaaaggaata  20321000
                                                      --------->AGP1
                                                      <-----------ARR10
                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                               --------->At4g35610
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ------
                                          --------->ATHB12                                  <-------
                                 --------->ANAC55(2) --------->At4g35610                    --------
                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC58         <---------RAP2.6(3)
                      --------->ARR14(2)  <---------AHL20(2)     --------->ANAC55(1)--------->ORA47(1)
                      <---------ARR14(2) --------->ICU4    --------->ANAC58      <---------At4g35610
          --------->YAB1         <---------ANAC55(2) <---------At4g35610         --------->At4g35610
--------->MYB46(3)    --------->TOE1(2)  --------->AHL20(2)--------->ANAC46     --------->DEAR3(1)
xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->DEAR3(1)
---->YAB1 --------->TOE2(3) ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->RAP2.6(2)
 
acaacaacttcaacgataacatgaaaatacgatgacacttgatatttattagcttcagctctacgcacacttaatttgaatcacagccgtccattgatct  20321100
               ------->MYC2
               <-------MYC3
               ------->MYC4
               <-------MYC2
               <-------MYC4
               >>>>>>>>>>AtbZIP1
               <-------PIF5
               ------->MYC3
               ------->PIF5
              <---------O2
              <---------TGA1a
              <---------PIF3(3)
              --------->TGA1a
              --------->O2
              --------->PIF3(3)
              >>>>>>>>>>HY5
              --------->ANAC46
         --------->ORA47(1)
         <---------RAP2.6(3)
        --------->RAP2.6(2)
        --------->DEAR3(1)                                            <---------AHL20(2)
      <---------At4g35610                  <---------ALFIN1      <---------YAB1
      --------->At4g35610           <---------CCA1(2)     <---------ANAC46            <----------DOF2
     --------->DEAR3(1)       <---------ARR11(3)          <---------ANAC58         <-----------GT1
  --------->YAB1              <---------ARR14(2)          <---------ANAC58     <----------DOF2     -
>ZmHOX2a(2) <---------ALFIN1  --------->ARR14(2)        ------>ZmHOX2a(1)    ---------->ID1        <
--ARR11(3) <---------WRKY12   --------->ARR11(3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <--------
->ARR11(3)<----------------PIF3(2)------>ZmHOX2a(1)   ----------->RAV1(2)   <-----------GT1---------
 
tctaatcacagccgtccacgtggccttactcaatatcctgtatcacacacattattctcctgcttgttctgattttttttttcttttttcttttctagat  20321200
                            --------->ANAC46                                                --------
                            --------->ANAC58                                        --------->TOE1(2)
                            --------->ANAC58        <------MYB83                    --------->TOE2(2)
                            --------->ANAC55(1)     <---------DEAR3(2)             ----------->RAV1(2)
        <-----------GT1     --------->ANAC55(2)     <------MYB46(1)                --------->ZAT2
-------->ARR11(3)           ----------->GT1   --------->DAG2               --------->MYB55(2)
---------ARR11(3)           <---------ANAC55(2)--------->DAG2              <---------MYB46(3) ------
-HSFB2a(2)               ------>ZmHOX2a(1)   ---------->DOF2<-----------RAV1(1)    <---------ZAT2
>HSFB2a(2)        <----------DOF2   ---------->DOF2--------->MYB59<---------ZAT18 ------->TEIL<-----
 
aagatttcaattcacaaatttctttttcctcacgtaaaaaaaagaagaaaaaggtcggtctacttgtggctcactcagtggttcgaacctgggtttagat  20321300
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AGI:  At3g54823.1   
Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.4e-203 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Range:  from: 20316278    to: 20320774    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.