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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----
-----
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------
<---------
At4g35610
<-------
<-----------
RAV1(1)
---------
--------->
GLK1(2)
<---------
ATHB12
------>
ZmHOX2a(2)
--------->
YAB1
--------->
AtLEC2
<--------
<---------
ATHB12
<---------
At4g35610
<---------
ARR14(2)
--------->
WOX13(1)
--------->
At4g35610
<---------
CCA1(2)
<------
ZmHOX2a(2)
------>
ZmHOX2a(1)
<------
NtERF2
------>
MYB46(1)
--------->
ANAC58
--------->
ARR14(2)
--------->
TOE2(3)
------>
NtERF2
------>
MYB83
--------->
ANAC58
<------
ZmHOX2a(1)
------
ALFIN1
<---------
GLK1(2)
--------->
AtMYB61
--------->
ZAT14
<-----------
RAV1(2)
cacttcatcctcaatcatattctggtgccaagtagcagccagaccatccaaatgaatagaaactacagacactcgcatctcttcaggtataggatccacc
20320400
--------->
GLK1(1)
<
--------->
LBD16
<------
------>
ZmHOX2a(1)
----------->
GT1
<--------
ATHB1
<---------
ANAC55(2)
--------->
TOE1(2)
--------->
ATHB12
<---------
AHL20(2)
--------->
TOE1(3)
<---------
ARR14(2)
<---------
ATHB12
--------->
AHL20(2)
--------->
TOE2(3)
--------->
GLK1(2)
<---------
YAB1
----->
LBD16
--------->
MYB46(3)
------->
TEIL
------------>
ATHB5
---->
DEAR3(1)
--------->
MYB46(3)
--------->
ARR14(2)
--------->
LBD16
--->
ANAC46
--------->
TOE1(3)
<---------
GLK1(2)
<---------
LBD16
<
--
ALFIN1
--------->
TOE2(3)
<---------
ATHB12
--------->
TOE2(3)
<-------
>
MYB46(3)
------->
TEIL
--------->
AtMYB61
<---------
ALFIN1
--------->
GLK1(2)
<-----------
GT1
<
-
ABI4(2)
-------->
P
-------->
P
--------->
MYB46(3)
--------->
HSFB2a(2)
--------->
ICU4
gcaaaaaattgatcaaccttaaacaaccattccttaaccttctcaccactgaatctgggaaaatccaacttccctaaccttgttactcccgaatgattgt
20320500
<---------
At4g35610
--------->
At4g35610
<-------
GAMYB
<---------
At4g35610
<---------
DEAR3(2)
<---------
MYB46(3)
<-----------
RAV1(1)
--------->
MYB52(2)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
=============
MYC_MYB
<-------
PIF5
<---------
TGA1a
<-------
MYC2
----------->
HVH21
--------->
bZIP60(2)
------->
PIF5
xxxxxxxxxxxxx
---------
ANAC58
--------->
ANAC46
------->
MYC2
<---------
GLK1(2)
---
MYB46(3)
--------->
TGA1a
<-------
MYC3
--------->
ARR14(2)
---------
ANAC46
<---------
O2
------->
MYC3
<---------
ARR14(2)
--
WOX13(1)
--------->
O2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
GT1
---------
ANAC58
--------->
ANAC55(2)
<---------
At4g35610
<xxxxxxxxxxxxxxxx
smallRNA(i)
tagcgtgaccttgccttctcatgtaatccacgtctgttgctgaagcggatgaagcacgagctgtttgatgagtctcacccagatttgactgcttagatgg
20320600
------>
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ANAC58
<---------
ANAC58
--------->
CCA1(2)
--------->
ARR11(3)
------>
ZmHOX2a(2)
------>
ZmHOX2a(2)
<---------
ARR11(3)
=======================
<---------
ARR14(2)
--------->
ARR11(1)
<---------
GLK1(2)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
<-------
MYC2
<---------
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
------->
MYC2
--------->
ARR11(3)
--------->
ARR14(2)
--------->
ARR11(3)
------->
MYC3
<---------
ARR11(3)
--------->
ARR11(3)
------>
ZmHOX2a(2)
-----------
<-------
MYC3
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
--------->
ARR11(3)
<-----------
HVH21
xxxxxxxxxx>
smallRNA(le3)
--------->
LBD16
<---------
ARR14(2)
<---------
ARR11(3)
----------->
RAV1(2)
agacagcatgtggatcgcctcaaacatctccgagatatggcgctcgatcttcagattttgagcatcgatcttgctctcgatcttctccatctgtgactcc
20320700
<---------
ZAT2
--------->
ZAT2
--------->
At4g35610
--------->
ANAC58
------>
ZmHOX2a(1)
--------->
LBD16
--------->
ANAC58
--------->
LBD16
<---------
HSFB2a(2)
<-
------>
ZmHOX2a(1)
=======================
HOX2a_HOX2a
---------
<---------
At4g35610
<---------
MYB59
--------->
HSFB2a(2)
---
--------->
ARR14(2)
<---------
At4g35610
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
============
HOX2a_HOX2a
<---------
ETT(2)
----------->
RAV1(2)
*
TSS
<----------
DOF2
>
HVH21
<---------
At4g35610
--------->
At4g35610
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
atcgattcctctgcttctaacgccttctctcgacgagcttgagctaactcctgagctcgagtctcgatcaccat
ctccgagaaacgtctttgctctgata
20320800
<---------
ICU4
------------>
CBF
---------->
DOF2
<---------
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
------------>
CBF
--------->
YAB1
--------->
ANAC58
<---------
ATHB12
------------>
CBF
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------->
RAV1(1)
--------->
ANAC58
--------->
AtMYB61
--------->
AtMYB61
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ICU4
<---------
ALFIN1
------->
GAMYB
--------->
YAB1
--------->
ANAC58
-------->
P
--------->
ICU4
--------->
ICU4
--------->
ANAC58
--------->
WOX13(1)
<---------
YAB1
--------->
At5g28300
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
WOX13(1)
<---------
ICU4
----------->
GT1
--------->
ANAC46
--------->
MYB46(3)
--------->
ICU4
---------
DOF2
--------->
ANAC46
<---------
ATHB12
<---------
ANAC55(2)
-->
HVH21
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ANAC55(2)
<-----
------>
TOE2(3)
--------->
AtMYB61
--------->
WOX13(1)
--------->
MYB46(3)
<-----------
GT1
------
cctttaatacagtaaaaccacaccacaacacaatcaatcaaccaaagcaatcatcaacaactccgattacttattattacgatgtaaataacaaatgaaa
20320900
--------->
GLK1(2)
--------->
ANAC58
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ANAC46
--------------------->
WRI1
<-----------
GT1
<---------
ARR14(2)
--------->
ARR14(2)
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<-------
TEIL
<---------
LBD16
--------->
ANAC58
<---------
LBD16
--------->
YAB1
<---------
GLK1(1)
--------->
ANAC58
<------
ZmHOX2a(1)
xxx
<---------
TOE1(2)
--------->
GLK1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
------->
TEIL
-----
----
GLK1(1)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
At4g35610
---------->
DOF2
--->
GLK1(1)
--------->
MYB52(1)
--------->
ANAC46
--------->
AtLEC2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
tccaatgttcataaaacaagggatttctggattcacctcgcaagaatcgacgttctatgcagaggatgaatctcggaatgttttcagagagaaaggaata
20321000
--------->
AGP1
<-----------
ARR10
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------
--------->
ATHB12
<-------
--------->
ANAC55(2)
--------->
At4g35610
--------
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ANAC58
<---------
RAP2.6(3)
--------->
ARR14(2)
<---------
AHL20(2)
--------->
ANAC55(1)
--------->
ORA47(1)
<---------
ARR14(2)
--------->
ICU4
--------->
ANAC58
<---------
At4g35610
--------->
YAB1
<---------
ANAC55(2)
<---------
At4g35610
--------->
At4g35610
--------->
MYB46(3)
--------->
TOE1(2)
--------->
AHL20(2)
--------->
ANAC46
--------->
DEAR3(1)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
DEAR3(1)
---->
YAB1
--------->
TOE2(3)
----------->
HVH21
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
RAP2.6(2)
acaacaacttcaacgataacatgaaaatacgatgacacttgatatttattagcttcagctctacgcacacttaatttgaatcacagccgtccattgatct
20321100
------->
MYC2
<-------
MYC3
------->
MYC4
<-------
MYC2
<-------
MYC4
>>>>>>>>>>
AtbZIP1
<-------
PIF5
------->
MYC3
------->
PIF5
<---------
O2
<---------
TGA1a
<---------
PIF3(3)
--------->
TGA1a
--------->
O2
--------->
PIF3(3)
>>>>>>>>>>
HY5
--------->
ANAC46
--------->
ORA47(1)
<---------
RAP2.6(3)
--------->
RAP2.6(2)
--------->
DEAR3(1)
<---------
AHL20(2)
<---------
At4g35610
<---------
ALFIN1
<---------
YAB1
--------->
At4g35610
<---------
CCA1(2)
<---------
ANAC46
<----------
DOF2
--------->
DEAR3(1)
<---------
ARR11(3)
<---------
ANAC58
<-----------
GT1
--------->
YAB1
<---------
ARR14(2)
<---------
ANAC58
<----------
DOF2
-
>
ZmHOX2a(2)
<---------
ALFIN1
--------->
ARR14(2)
------>
ZmHOX2a(1)
---------->
ID1
<
--
ARR11(3)
<---------
WRKY12
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<--------
->
ARR11(3)
<----------------
PIF3(2)
------>
ZmHOX2a(1)
----------->
RAV1(2)
<-----------
GT1
---------
tctaatcacagccgtccacgtggccttactcaatatcctgtatcacacacattattctcctgcttgttctgattttttttttcttttttcttttctagat
20321200
--------->
ANAC46
--------
--------->
ANAC58
--------->
TOE1(2)
--------->
ANAC58
<------
MYB83
--------->
TOE2(2)
--------->
ANAC55(1)
<---------
DEAR3(2)
----------->
RAV1(2)
<-----------
GT1
--------->
ANAC55(2)
<------
MYB46(1)
--------->
ZAT2
-------->
ARR11(3)
----------->
GT1
--------->
DAG2
--------->
MYB55(2)
---------
ARR11(3)
<---------
ANAC55(2)
--------->
DAG2
<---------
MYB46(3)
------
-
HSFB2a(2)
------>
ZmHOX2a(1)
---------->
DOF2
<-----------
RAV1(1)
<---------
ZAT2
>
HSFB2a(2)
<----------
DOF2
---------->
DOF2
--------->
MYB59
<---------
ZAT18
------->
TEIL
<-----
aagatttcaattcacaaatttctttttcctcacgtaaaaaaaagaagaaaaaggtcggtctacttgtggctcactcagtggttcgaacctgggtttagat
20321300
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AGI:
At3g54823.1
Description:
transposable element gene. gypsy-like retrotransposon family, has a 4.4e-203 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Range:
from: 20316278
to: 20320774
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.