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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ATHB12
------>
MYB46(1)
<----------
DOF2
------>
ZmHOX2a(1)
--------->
ARR11(3)
------>
TEIL
<---------
ATHB12
<---------
ARR11(1)
----
ANAC55(1)
<---------
ICU4
<---------
CCA1(2)
----
ANAC46
--------->
ICU4
<-----------
GT1
--------->
AtMYB61
<-----------
GT1
----------
>
GT1
--------->
YAB1
<---------
ZAT6
<-----------
GT1
--------->
TOE2(3)
------>
MYB83
tgtatccatgctctaataatgtattcctagtgtatgaaataactattcacaaaataaaccaaaacatcaaatcttttttaccaatcttttgaatagttat
19598400
==============
<-----------
GT1
<---------
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
--------->
HSFC1(2)
<---------
At4g35610
--------->
At4g35610
<-----------
RAV1(2)
<----------
DOF2
--------->
DAG2
------->
TEIL
---------->
DOF2
--------->
ANAC58
<
<---------
At4g35610
----------->
GT1
--------->
At4g35610
--------->
ANAC58
<-
->
GT1
--------->
At4g35610
<---------
TOE2(3)
<---------
ALFIN1
<-----------
HVH21
--------->
ANAC46
<-
ttcacttgagctctgatcaacattttttatggtatggtaaaaaatccacctctcagataaagcatcacatcagatgaaacacgaattttctttttcagta
19598500
------->
MYC3
------->
MYC2
-
------->
MYC4
----
<-------
MYC4
<---
<-------
MYC3
------
<-------
MYC2
-------
<---------
TGA1a
<------
--------->
TGA1a
--------->
ARR14(2)
<---------
O2
<---------
ARR14(2)
<---------
ANAC55(2)
<-------
MYC3
<---------
ALFIN1
------->
MYC3
<---------
At4g35610
--------->
ANAC55(2)
--------->
O2
-
--------->
At4g35610
--------->
O2
--------->
ARR14(2)
--------------->
AtSPL8
--------->
ARR14(2)
===============================
bZIP_DOF
--------->
GLK1(2)
<---------
ARR14(2)
---------
MYB52(1)
<------------
OsbHLH66
<---------
GLK1(2)
--------->
ANAC55(2)
<
----------
HVH21
<---------
ALFIN1
--------->
ZAT14
<---------
AHL20(2)
<-----------
GT1
<-------
----------
TGA1
<---------
ZAT18
<---------
MYB52(1)
<---------
YAB1
<----------
DOF2
--------->
ANAC46
ccgtcagattaaaagattgcccacacgtgtttcccgtttactcttcttagattcttattcaatttgtacaaactctttttttacatatccacgtttccgg
19598600
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
ICU4
--------->
AHL20(2)
---------->
DOF2
<---------
AHL20(2)
-------->
ANAC58
<---------
ATHB51
----->
ARR14(2)
--------->
ICU4
------
ARR14(2)
<---------
AHL20(1)
--
--->
LBD16
<-----------
GT1
--------->
YAB1
<-
-->
HSFB2a(2)
----------->
GT1
<---------
AHL20(2)
<--
---
HSFB2a(2)
----------->
GT1
--------->
AHL20(2)
--------->
YAB1
---
-------->
ANAC58
--------->
DAG2
--------->
AHL20(2)
<-------
TEIL
------
----------
ID1
---------->
DOF2
------>
ZmHOX2a(1)
<-----------
GT1
--------
--
LBD16
--------->
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(2)
------->
TEIL
<----
aaacgacaaagaagaacaattcaataaagtgataaacccttctccattcctaaattaaaataattaattaactcttaacattcatgaatctctaatccta
19598700
--------->
ATHB51
<---------
ICU4
<--------
ATHB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
YAB1
------->
YAB1
<---------
ARR11(3)
-----
----------
GT1
--------->
ARR11(3)
-----
-------
ATHB12
<---------
AHL20(2)
------>
ZmHOX2a(1)
-----
------>
MYB46(3)
<---------
MYB52(1)
<---------------
AGL15
<---------
ZAT18
>
ZmHOX2a(1)
<-----------
GT1
--------->
TOE1(3)
<---------
ZAT14
->
YAB1
--------->
ICU4
--------->
AHL20(2)
--------->
TOE2(3)
--------->
ZAT14
*
TSS
-----
ICU4
<---------
AHL20(2)
<----------
DOF2
<-----------
GT1
<----------
atcaccattaataatttatccattagattaaatcttctttcttctcttccttaacttagaagactcttaaatctaataactctgttcacttccttcac
ac
19598800
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ANAC55(2)
--------->
ANAC55(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
TOE1(2)
<---------
ARR11(3)
<---------
ANAC46
<---------
ARR14(2)
--------->
DAG2
<-----------
ARR10
--------->
YAB1
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ARR14(2)
---->
ANAC58
<-------
TEIL
<---------
CCA1(2)
---->
ANAC46
<---------
HSFC1(2)
<---------
ARR14(1)
---->
ANAC58
--------->
HSFC1(2)
>>>>>>>
ZML2
<---------
AGP1
-
HVH21
---------->
DOF2
<----------
DOF2
<---------
ANAC46
--------->
ANAC46
gaatcaaaaacaaaaagcttcgtacatttcgcctagctttcttcgttctagggtttcggatcttacttaattacccaaaacccttgaatccattactctg
19598900
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
------->
TEIL
<----------
DOF2
<---------
ANAC46
<---------
ICU4
<---------
DAG2
--------->
ATHB12
<---------
ATHB12
<---------
CCA1(2)
<---------
ATHB12
<---------
TOE2(3)
--------->
YAB1
<
--------->
At4g35610
<----------
DOF2
---------->
DOF2
--------->
ICU4
<----------
<---------
At4g35610
<-----------
GT1
<---------
ANAC58
--------->
ARR11(3)
<----------
DOF2
tgtgagcttaaatctcttaccttttatcactttcaatcgattgggtattaagttgtaaaggaaggaacttggaatc
atgaagcttgggcttttcactctc
19599000
<---------
ANAC55(2)
--------->
ANAC55(2)
----------->
RAV1(2)
<---------
At4g35610
--------->
At4g35610
<---------
MYB46(3)
--------->
TGA2(1)
<-------
TEIL
--------->
REM1(1)
>>
--------->
ARR14(1)
<---------
TGA2(1)
------
------->
TEIL
<---------
GLK1(2)
<---------
bZIP60(1)
<--------
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
bZIP60(1)
<----------
--------->
ARR11(3)
--------->
ARR11(1)
<-------
TEIL
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
<-----------
GT1
<---------
ARR11(3)
---------
CCA1(2)
----------->
ARR10
---------->
DOF2
---------->
DOF2
<<
-
GT1
<---------
At4g35610
<--------
P
--------->
TOE2(3)
<------
ZmHOX2a(2)
-----
tcgtttcttctgatcttgaatctagcaatgggtagattcgttgttgagaagaacaatctcaaagttacatcacctgattcgatcaaaggtatttacgaat
19599100
--------->
DEAR3(1)
<------
NtERF2
--------->
DEAR3(2)
--------->
ATERF1(1)
------>
NtERF2
<---------
ALFIN1
<------
NtERF2
--------->
ATERF1(1)
--------->
ARR14(2)
<---------
ABI4(2)
<---------
ARR14(2)
<---------
ATERF1(1)
--------->
YAB1
<---------
MYB46(3)
<-----------
HVH21
--------------------->
WRI1
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
---------->
DOF2
>>>>>>>>>>>>>>>
LFY
<---------------
AGL15
<---------
RAP2.3(1)
---------->
DOF2
->
TEIL
--------->
GLK1(1)
<---------
ORA47(2)
--------->
YAB1
-
YAB1
<---------
LBD16
--------->
ALFIN1
<---------
ATERF1(1)
<---------
ATHB12
-
GT1
----------->
GT1
------>
ZmHOX2a(1)
<---------
DEAR3(2)
--------->
WOX13(1)
<<<<<<<<<<<<<<<
LFY
--------->
TOE2(3)
<---------
DEAR3(1)
------>
ZmHOX2a(1)
<---------
ANAC58
---->
HSFB2a(1)
<---------
GLK1(1)
<----------
DOF2
--------->
TOE2(3)
<---------
ANAC58
gtgccattggtaatttcggagttcctcaatacggtggtactttagtcggcaccgtcgtctatcctaaatccaatcagaaagcttgtaaaagctactccga
19599200
<-
<--
---
---
----
----
<---
----
------>
ZmHOX2a(1)
<----------
DOF2
<-
===============
HOX2a_HOX2a
<---------
DAG2
<---
<----------
DOF2
--------------->
AtSPL8
--
------>
ZmHOX2a(1)
------>
MYB83
<---------
ARR11(3)
<---
<---------
ARR11(3)
------>
MYB46(1)
<-------
TEIL
--------->
ARR11(3)
----
--------->
ARR11(3)
<---------
MYB59
------>
ZmHOX2a(2)
---------->
DOF2
<--------
<---------
GLK1(1)
----------->
RAV1(2)
---------->
ID1
<---------
MYB46(3)
<-----------
GT1
<---
tttcgatatctccttcaaatccaaacctggacgattaccaacttttgtccttatcgatcgtggag
gttcgatttcaaagttcttacctttttagttgttc
19599300
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AGI:
At3g52850.1
Description:
ATELP/ATELP1/BP-80/BP80/BP80B/VSR-1/VSR1 (ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN); amino-terminal vacuolar sorting propeptide binding. Identical to Vacuolar-sorting receptor 1 precursor (VSR1) [Arabidopsis Thaliana] (GB:P93026;GB:P94037;GB:Q94AC0); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G30290.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.1); similar to vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum] (GB:ABC01915.1); si
Range:
from: 19598799
to: 19602925
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.