Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->WRKY38(1)                                                                                        <---------MYB52(1)                                                                               --------->GLK1(1)                                                                           <---------ANAC55(2)                                                                           --------->ANAC55(2)                                                                           --------->ANAC58                                                                           --------->ANAC58    --------->ZAT18                                                     ----------->HVH21--------->WRKY12  <------ZmHOX2a(1)                                               <------MYB46(1)      <-------GAMYB --->CCA1(2)              <----------ID1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->At4g35610 ---ARR11(3)      <---------LBD16     <---------ICU4              <------MYB83------->TEIL -->ARR11(3) --------->ZAT18         <------ZmHOX2a(2)           <---------AtMYB61     ============== -->ARR10    <---------ZAT18        --------->ARR11(3)          <---------WOX13(1) <---------ALFIN1   tgaaggagcactgagtcgactcgggaatgagacgaatggatcatggccgtagattgggaagtctggattggtttgtgacgcatctccaccgttgatcaaa  18818800                                                                                              <------                                                                                              <------                                                                                             --------                                           <---------ANAC58                               <-------GAMYB                                           <---------ANAC58                              --------->MYB55(2)                                        <---------DEAR3(1)                               <------MYB46(1)                                       <---------ZAT2                                    <------MYB83                                       --------->ATERF1(1)                               <---------MYB46(3)                                       <---------At4g35610                               --------->MYB52(2)                                       --------->At4g35610                              <---------TOE1(2)                                      <---------RAP2.3(1)                               <---------TOE2(2)                                      <---------ATERF1(1)                              <---------MYB52(1)                                      ------>NtERF2                                   <-------GAMYB               <------NtERF2         <---------DEAR3(1)                              <---------DEAR3(1)             <---------DEAR3(1)    --------->MYB52(1)                                --------->MYB55(2)           <-----------HVH21      ----------->HVH21                            --------->TOE2(2)          --------->TGA1a        --------->DEAR3(2)                   ----------->GT1<---------MYB46(3)          <---------TGA1a   --------->ANAC46                        ---------->DOF2  --------->MYB52(2)          --------->O2     <---------LBD16 <---------ANAC46    --------->ALFIN1--------->TOE1(2)      <---------ALFIN1     --------->LBD16<------NtERF2        <---------ANAC46<---------LBD16<------     --------->MYB46(3)    --------->HSFB2a(2)              --------->LBD16  --------->GLK1(2)<------ ===================MYC_MYB------>ZmHOX2a(1)               <-----------RAV1(2)----------->RAV1(2)   ctctccatccactcgtcggagtcaaactcctcggaagcgacggctgcgttttgatgatgctccaggtgtggaaagtgaaaacctgggtcgttggttactt  18818900                                                                  <---------ANAC58                                                                  <---------ANAC58                                                              <---------ANAC58                                                              <------MYB83                                                              <---------ANAC58        <------NtERF2                                         <------MYB46(1)      <---------DEAR3(1)    ----------->GT1                  --------->MYB59      --------->ETT(1)--------->LBD16                        <------MYB46(1)    <-----------HVH21<---------LBD16                         <------MYB83 ---ANAC58        <---------ARR14(2)                       <--------P                               < ---ANAC55(2)     --------->ARR14(2)                     <---------MYB46(3)                         < ->MYB52(2)   <-----------------AGL1         --------->ATHB12<---------MYB46(3)                  <--- ---ANAC58  <---------GLK1(1)            <------ZmHOX2a(1) --------->ALFIN1                <---------TOE2(3) ---ANAC46  --------->GLK1(1)        --------->LBD16 <-----------RAV1(2)              <---------MYB46(3)   gaaacgggtcggagaaacccgaaccgggaagagtaaacccgaaggatggattgggccaggggttgggttcttgttcttgttcttcttgttgttgatgttg  18819000                                                                        --------->ANAC58                                                               --------->ZAT14                                                               <---------ZAT14                                                            <---------DEAR3(2)                                                           <---------DEAR3(1)                                                           <---------MYB46(3)                                                           <---------DREB2C(2)                     <-                                                           <---------DEAR4(1)                     <--                                                           <---------At1g77200                   ----                                                         <-----------HVH21                       ----                                                        <-----------RAV1(1)                      <---        <---------At4g35610                             ----------->HVH21                       -----    <-----------RAV1(1)                               --------->LBD16   --------->ANAC58        <----    <---------REM1(1)                                 --------->At4g35610                       -----    <---------MYB46(3)                                <---------At4g35610                      ------ <---------MYB46(3)                               --------->ARR14(2)    --------->ANAC46       <----- ---------YAB1                                    <---------ARR14(2) <---------ARR14(2)       <------ ---------WOX13(1)          <---------MYB46(3) <---------TOE2(3)     --------->ARR14(2)   <----------DOF2 ------YAB1<---------At4g35610              <---------MYB52(1) <---------ZAT18     ------>NtERF2<----   tgattgttgttgctgcttctgtttgatgagttgttgtgctatagccattaagtttccgctgtcggtgcacatatacgccattctccgactcactttcgcc  18819100        <---------ANAC58        <---------ANAC58 --------DEAR3(1) ----NtERF2 ----->LBD16 -->NtERF2                          <---------WOX13(1) ------ATERF1(1)                  <---------MYB46(3) ---->DEAR3(1)                   <---------YAB1 -----DEAR3(1)                 <---------MYB46(3)                            --------->LBD16 ---->ATERF1(2)             <------MYB46(1)                                <---------LBD16   <------ZmHOX2a(1) --->ATERF1(1)              <------MYB83                          <---------YAB1           *TSS------ ----LBD16 <----------DOF2 --------->MYB111(1)                  --------->CCA1(2)  <---------ARR11(3) ---RAP2.3(1)         <---------MYB52(1)                       <---------ARR14(2)  --------->ARR11(3) -----ATERF1(2)      <-------GAMYB--------->ATHB12             --------->ARR14(2) <---------RVE1(1) -   ggcgatgaaggcgtttttttgtctgttatttggtggtgattgagtaaggcccagagagagagagggatatgaatgaaaccggagagattttagtaggaag  18819200                                                                                                    <                                  <---------YAB1                                          --------->AHL20(2)                                 <-----------GT1                        <---------HSFB2a(2)         <        ---------->DOF2    <---------YAB1                               --------->HSFB2a(2)   <------  ----------->GT1    <---------YAB1                              --------->YAB1          ------------ --------->DAG2     <-----------GT1                             <---------YAB1           <---------ATHB12 ----->GT1       --------->ARR14(2)       <----------DOF2      <-----------GT1        <---------AHL20(2) --------->DOF2  <---------ARR14(2)--------->YAB1      <---------At4g35610  <---------ZAT14--------->WOX13(1)   aaaaaagtaagaaagtgagtattttcattttgatttatcattttctttttttttgtcatccgatttatcattttcgagtactgtatttttaatcaattac  18819300                         <---------MYB52(1)                                                         <                       --------->ANAC55(2)                                                          -                       <---------ANAC55(2)                                                    -------            <----------ID1    <-----------GT1                        ----------->RAV1(1)    ---------          --------------->AtSPL8                              --------->MYB46(3)          <---------MYB46(2) ----------DOF2        ----------->GT1                       ------>MYB83                 <---------MYB52(2) ---------DAG2       <-----------GT1 --------->ANAC58        ------>MYB46(1)              <---------MYB111(1) -----GT1 <---------------AtSPL8     --------->ANAC58       ----------->RAV1(1)         --------->MYB52(1) >CBF    ---------->DOF2--------->TOE2(3)                 --------->MYB46(3)          <---------MYB52(2)   cactttagtttaaaagtacaaaattacgttattaactgcaagaaatgaagaaactataaaaccaacaacaacaacaaaaaatgaagaaactaactaacat  18819400                                                       ----------->GT1                             <---------ICU4 --------->YAB1                             --------->AHL20(2)-------->HAHB4                             --------->ATHB51 <---------YAB1                 --------->AHL20(2)                             <---------AHL20(2)--------->YAB1              <------------CBF--------->ARR11(3) ---------ZAT14             --------->ICU4<---------AHL20(2)            ------------>CBF   <---------ARR11(3) -------->ZAT14          --------->AHL20(2)<---------AHL20(2)    --------->YAB1           <---------CCA1(2) -->YAB1                 <---------AHL20(2)--------->AHL20(2)--------->AHL20(2)   <---------ICU4 >MYB52(1)      <---------MYB52(1)        --------->AHL20(2) <---------AHL20(2)   --------->ATHB51  -   agtttactaaaaaactcagttttgtatttaattattttcaagaatttaataatagaaatgtaatttatcaaaatatcaattgaataatttctatatctca  18819500                                                                                            <--------                                                                                         <---------ICU4                                                                                         -------->ATHB1                                                                                         <--------HAHB4                                                                                         --------->YAB1                                                                                         --------->ATHB51                                                                                         -------->HAHB4                                                                                        <---------ATHB51                                                                                        <---------YAB1                                                                                        --------->ICU4                                        <---------DAG2                                --------->YAB1           <---------ANAC58  <---------AHL20(2)                    <---------TOE2(2)  <---------ICU4           ----------->GT1  --------->AHL20(1)                 <-------TEIL          --------->ICU4 -           <---------ANAC58 <---------AHL20(1)          --------->AHL20(2)           --------->AHL20(2)           <---------ANAC46 <---------AHL20(2)         --------->AHL20(2)            <---------AHL20(2) ------>TEIL                --------->AHL20(2)     --------->AHL20(2)                <---------ATHB51   tgaatttgtagtttcgtataatcttacaaatttattcagaaaccttttgaccaaaaaataaaaaatacataggtttttttttgttaaataattattacca  18819600                                                                                                  ---                                                                                           <---------                                                                                           <---------RAP2.6(3)                                                                                          <---------TGA2(1)                                                                                          <---------ANAC55(2)                                                                                          <<<<<<<<<<HY5                                                                                          --------->bZIP60(1)                                                                                          --------->O2                                                                                          --------->TGA2(1)                                                                                          <---------O2                                                                                          --------->ANAC55(2)                                                                            <---------ALFIN1      ---                                                                          --------->TCP23 >>>>>>>>>>HY5                                                                          --------->TCP15(2)---------                                        ---------->DOF2                  --------->PCF2  ----------->STF1                                 <---------YAB1                          <---------TCP20 <-----------STF1                           <---------TOE2(3)                             <---------TCP15(1)<---------                           <---------TOE1(3)                            --------->TCP15(1)<---------bZIP60(1)                          <---------DOF5.7(2)              --------->ARR11(3)           <---------TGA2(2)                         ----------->TGA1                  <---------ARR11(3)  --------->DEAR4(1) <--          ----------->GT1--------->WRKY12                 <---------GLK1(1) ----------->RAV1(1)------ ---GT1  ----------->GT1 ----------->HVH21                --------->GLK1(1)--------->MYB46(3)  <----- ---------->GT1   ---------->DOF2----------->GT1----------->GT1         <---------PCF2 ----------->TGA1   ctctgttaatatgggtaaaaaaaagagttgacgttatgaaaaaaaagagagagtaaaacgatatctcacttatgggacccacagacacgatgacgtcatg  18819700  Previous    Next  AGI:  At3g50650.1    Description:  scarecrow-like transcription factor 7 (SCL7). similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G66770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22856.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 18817239    to: 18819191    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50651.1    Description:  unknown protein Range:  from: 18819672    to: 18819863    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.