Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   --                                                                                                   --          --------->TOE2(2)                                                                        --  <----------DOF2                                                                        <---------ANAC55(2) -ZmHOX2a(2)                                                                             --------->ANAC58 --->CCA1(2)             <---------YAB1                                                  --------->ANAC55(2) -->ARR11(3)           --------->YAB1                                                    --------->ANAC46 ---ARR11(3)          --------->ICU4                 --------->ZAT14                     --------->ANAC58 -->AGP1  --------->TOE1(2)  ------>ZmHOX2a(2)       <---------ZAT14          --------->MYB52(1)   -- -->ARR14(2)      <---------ZAT14                  --------->ANAC46---------->DOF2      ------------- ---ARR14(2)      --------->ZAT14                 ---------->DOF2<---------ZAT6     --------->ARR14(2)   caagctttataatctgcgaatgcagtgatgatcccatggaaacatactcaaatacagcactaagctagtgaaagttgaactaatgggattcacgtactca  18724200                                      --------->GLK1(2)                                      <---------ARR14(2)                                      --------->ARR14(2)                                     <---------GLK1(2)                                     <---------ARR14(2)     ------->MYC3             <---------ANAC58       --------->ARR14(2)     <-------MYC3             <---------ANAC58       <---------ARR14(2)    <---------O2            <---------ARR11(3)       <---------KAN4(2)    --------->O2            --------->ARR11(3)   --------->LBD16  ----------->RAV1(1)       <---------ARR11(1)   --------->HSFB2a(2)  <---------ALFIN1          --------->ARR14(2)  <---------HSFB2a(2) ----->NtERF2<---------YAB1 <---------ARR14(2)  --------->HSFB2a(2) ------->ANAC58            <---------CCA1(2)    <---------LBD16 ------->ANAC58            --------->GLK1(1)    <---------ANAC46 ------->RAP2.6(2)     --------->ANAC58        <---------LBD16 ------->ANAC46        --------->ANAC58      <---------ARR14(2)   ----------->GT1 -->AtSPL3 --------->ATHB12<---------GLK1(1) --------->ARR14(2)   <---------ZAT6   gacgccacatggattattagactaaacgcatatcttgcagaatctgggttccgggaatactccgaatagagttacaatgtttctctgaggcattttgtcg  18724300                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                 --------->RAP2.3(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                <---------RAP2.3(1)                                                                                <---------ATERF1(1)                                                                               <---------DEAR3(1)                                                                               --------->DEAR3(1)                                                                              <------NtERF2                                                                              <---------At4g35610                                                                         --------->ANAC46                                  <---------ANAC55(2)               <---------GLK1(2)                                  --------->ANAC58              --------->SPL7--------->At4g35610                     --------->ZAT14 ------->TEIL             <---------SPL7<---------DEAR3(1)                     <---------ZAT18 <-------TEIL            <---------ANAC58 --------->ATERF1(1)          <---------ANAC58        --------->ANAC55(2)        <---------ANAC46 <---------ZAT2          <---------ANAC58        --------->ANAC58          <---------------AtSPL8 ------>NtERF2       --------->LBD16        --------->AtMYB61             <---------------AtSPL3--------->DEAR3(1)      <---------ANAC58       --------->bZIP60(2)            --------------->AtSPL3<---------ANAC46      <---------ANAC46       --------->ANAC46           --------->MYB52(2) <------NtERF2      <---------ANAC58     <---------ALFIN1           <---------YAB1<---------ARR14(2)         <-----      --------->ANAC55(2)  --------->REM1(1)        ----------->GT1 --------->ARR14(2)     --------->ALFIN1  <----------DOF2  <---------At4g35610      --------->CCA1(2)<---------ANAC58<---------ATERF1(1)  <--   aacactttccgtgcttgttccagcgaactacacctcacgtacatcgatatgagattgttatttgcgtacggatactcggcagcggcgtctacggtgagga  18724400                  <------NtERF2            ---------->DOF2           ----------->HVH21          <---------MYB52(2)                                                               <---------GLK1(2)         <XXXXXXXXXXXXXXXXXXXXMIR852                                              <------NtERF2         --------->At4g35610                                                     --------->RAP2.6(2)         <---------At4g35610                                                     ------>NtERF2     --------->ALFIN1                                                           <---------RAP2.6(2)   <---------ANAC58                           ------->GAMYB                     --------->ATERF1(2)   <---------ANAC46                        --------->MYB52(1)     <---------At4g35610   <-----------GT1   <---------ANAC58               --------->DAG2                  <---------ZAT2<---------DEAR3(1) -ZmHOX2a(1)--------->MYB52(1)   ---------->DOF2     --------->HSFC1(2)         <---------ATERF1(2) ----ZmHOX2a(1)  ------>NtERF2----------------->AGL1 <---------HSFC1(2)        --------->RAP2.6(3)   ggagagcgtggagctaacgcgcctgttttagtgccaaaagttgtacaacggaagaagctacttcgttcagcttgttcgcagggcggcaattcacattctc  18724500                        <---------ANAC58          <---------HSFB2a(1)          --------->HSFB2a(1)          --------->HSFC1(2)                                       <---------TOE2(3)          <---------HSFC1(2)                         <---------ANAC46           ----------->RAV1(2)         ----------->ARR10                        --------->ANAC46 <---------TOE1(3)                -   --------->DAG2       <---------ANAC58   <----------DOF2        ---------->DOF2           ---------  ---------->DOF2      <-------TEIL       <---------DAG2       <----------DOF2<-----------GT1      --   tctataaagcgaagtttcgaaacgatgcgtttcatttgaactcaccttttaaacgccgtgtttgactttaaagtttaatctaacctgtctctacaaacaa  18724600                                                                              *TSS                                                                            --------->ZAT18                                                                            --------->ZAT14                                                                    <------NtERF2                                                                   --------->LBD16    <---------ANAC46                                               ------>NtERF2    <---------ANAC58                             --------->YAB1   <---------DEAR3(1)     ----------->GT1    <---------ANAC58                          --------->YAB1      --------->LBD16      <-------GAMYB   ------>NtERF2                   --------->ANAC58               --------->ANAC46   <------NtERF2 -------->At4g35610                --------->ANAC58              <---------LBD16   <---------ETT(2) >ANAC46              <-----------TGA1      --------->AHL20(2) ------>ZmHOX2a(2)<-----------RAV1(1) ------->ANAC46------->TEIL        --------->ANAC46      <------------CBF   <---------ZAT14   tacgctgcgtttcatcgaacctctcgtcataacaaaaacgctacgttttaataagagtttattgatccccggcgagagtgaactgtcgtcgttgtaaaat  18724700              <---------ANAC58      --------->ARR14(2)    --------->ANAC46    --------->LBD16                      <----------DOF2   --------->HSFB2a(2)                  ------>ZmHOX2a(2)                     <---------At4g35610   <---------HSFB2a(2)                <---------ARR11(3)               <---------YAB1  <---------LBD16                     --------->ARR11(3)            <---------YAB1                  < --------->MYB52(1)        <---------CCA1(2)                     --------->ICU4             <-------- -------->P   <---------ANAC58      ------>ZmHOX2a(2)     <---------ANAC46    --------->At4g35610<---   ggctaccggaaacttggcttctcgtcttcatctcttgatcgatctttgtgttcgccaattccctgtaagtattattcttcagctcttgttctccgtttcg  18724800                                                                                            ---------                                                                                            ---------                                                                                  <------NtERF2                                                                                 ------>NtERF2      -                                            <---------LBD16                     --------->DEAR3(1) --                                            <---------HSFB2a(2)                --------->DEAR3(2)----        --------->YAB1                      --------->HSFB2a(2)      ----------->GT1        --------- ---------YAB1                  --------->ANAC58           ---------->DOF2     ----------------->AGL1 -MYB52(1) <-----------GT1      --------->ANAC46          <------ZmHOX2a(1)<----------DOF2--------->MYB52(1) ------MYB52(1)                 --------->ANAC58     <---------REM1(1)  <-----------GT1  <---------ARR14(2)   ttatgagttattgtaactatgtgtaattgtataaacgcaattggttctcggagtcatgtaggaaagagaagaagtaactttgccgacgaaggaaacggaa  18724900   ------>ZmHOX2a(2)  <------ZmHOX2a(2)                                                                 <----------------  --------->CCA1(2)                                                                ------>ZmHOX2a(1)  --------->ARR14(1)                                                          --------->LBD16 <---------ARR11(3)                                                         <---------LBD16 --------->ARR14(2)                                                       <---------ARR14(2) --------->AGP1                                                           --------->ARR14(2) <---------AGP1                                                          <---------HSFC1(2) --------->ARR14(3)                                                      --------->HSFC1(2) <---------ARR14(3)                                                      --------->ZAT2 --------->ARR11(3)           --------->ATHB12                           --------->HSFB2a(1) <---------ARR14(2)           <---------ICU4                             --------->At4g35610 >ANAC58                     --------->ICU4                              <---------At4g35610 -->GT1                      <---------YAB1              <---------ANAC46<---------ZAT2 -------->RVE1(1)     <---------TOE2(2)                ------>ZmHOX2a(1) <---------HSFB2a(1) --------->ARR10      <---------TOE1(2)           <---------ANAC58  --------->HSFB2a(2) ------>DOF2         <-----------RAV1(2)          <---------ANAC58  ------>ZmHOX2a(1) >ANAC58  <----------DOF2 <-------TEIL      <---------AHL20(2)      <---------HSFB2a(2)<---------AHL20(2)   aaagatctgcttctttctctatctcaggttcatcattgtcgatgatttttttgcttcctgtgtgttaatcctcgaagctccggtcctcttaaattggata  18725000                                                                     <---------MYB46(3)                                                                    --------->ALFIN1                                                                    <---------AtMYB61                                                                    <---------DEAR3(1)                                                                   <------NtERF2                                                                   <-------GAMYB                   --                                                                   <---------ABI4(1)      <---------GLK1(1)                                                                  <---------DEAR4(2)      --------->GLK1(1)                                                                 <---------DREB2C(2)   <---------TOE2(3)                                                                 --------->ALFIN1 <---------ANAC58 <-                                                                 <---------DEAR3(1)<----------DOF2 <-                 --------->ALFIN1                             --------->DAG2      <---------ANAC58 --             <-----------RAV1(2)                       --------->ANAC55(2)   --------->ATHB12  ------ -AGL3     <-----------GT1                <------ZmHOX2a(1)  ---------->DOF2<-------TEIL <---------ICU4   gttttttttttttttacaggtgttgagagaaattcaatcttggaggagcgaaatttcatgtgataaggcggtggtgagttcattgctttaagaattccta  18725100  Previous    Next  AGI:  At3g50420.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67254.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18721852    to: 18724630    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50430.1    Description:  similar to Os07g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058781.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17953.1) Range:  from: 18724678    to: 18728390    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.