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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
ICU4
<---------
AHL20(2)
-------->
HAHB4
--------->
ATHB12
<---------
YAB1
---------
YAB1
--------->
ICU4
--------->
ICU4
--------->
AHL20(2)
---------
ATHB12
--------->
YAB1
<---------
YAB1
--------->
ATHB51
-------->
ICU4
<---------
ICU4
----------->
GT1
<---------
AHL20(2)
--------
TOE2(3)
--------->
AHL20(2)
--------->
ICU4
<---------
TOE1(3)
----->
AHL20(2)
<---------
ATHB51
<---------
ICU4
<---------
TOE2(3)
------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ATHB51
---------->
DOF2
-----
YAB1
--------->
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<-----
---
ICU4
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
CCA1(2)
<--------
--
YAB1
--------->
TOE1(3)
--------->
AHL20(2)
--------->
ICU4
--------->
ARR11(3)
---------
->
ICU4
--------->
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
<---------
ARR11(3)
<---------
YAB1
taatgatttaaaaccataaataattattcaaataaattttatgttcaaaacaaaaataattagtaatattgaagatttaaagttagagaattattttttt
16743200
-----
-----
-----
<xxxx
-----
-----
------
-------
-------
<------
------>
NtERF2
<------
--------->
At4g35610
------->
GAMYB
--------->
ANAC46
<-----------
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
------->
GAMYB
----
--------->
RAP2.6(2)
<---------
YAB1
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
AHL20(2)
--------->
AHL20(2)
<------
--------->
AHL20(2)
<---------
AHL20(2)
<xxxxxxx
<---------
AHL20(2)
<---------
AHL20(2)
--------->
MYB46(3)
<---------
AHL20(2)
<----------
DOF2
==============================
<---------
TOE2(3)
--------->
AHL20(1)
---------->
ID1
--------------->
AGL15
--------
<---------
AHL20(2)
<---------
AHL20(1)
<-----------
GT1
<----------
DOF2
--------->
MYB46(3)
----
YAB1
--------->
AHL20(1)
<<<<<<<<<<
GT-3b
<----------
DOF2
-------->
P
---------
-
AHL20(2)
<---------
AHL20(1)
<---------
YAB1
<-----------
GT1
<xxxxxxxxxxxxxxxx
smallRNA(i)
>
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
MYB52(1)
atagaattaatgtgaatataaaacttgataatatatattttaatttgattatttttcttttttaatttcttttctttttaaatcaaccgcaaccgcagcc
16743300
--------->
At4g35610
------->
GAMYB
--------->
MYB46(3)
------>
MYB46(1)
-------->
P
<---------
ANAC58
------>
MYB83
<---------
ANAC58
--------->
MYB52(1)
---->
ANAC58
--------->
MYB55(1)
---->
RRTF1(2)
--------->
AtMYB61
---->
RAP2.3(2)
<---------
MYB111(1)
xxxxxxxxxxxx
smallRNA(s)
<---------
MYB55(2)
---->
ANAC58
<---------
MYB46(2)
---->
RAP2.6(2)
<---------
MYB111(2)
--->
RAP2.3(1)
--------->
MYB46(3)
-->
At4g35610
--------->
DEAR3(2)
-->
ZAT2
<------
MYB46(1)
---
At4g35610
--------->
ANAC46
<------
MYB83
---
ZAT2
--------->
HSFB2a(2)
--------->
SPL1(2)
<---------
WOX13(1)
-
AtMYB77
--------->
GLK1(1)
--------->
SPL7
<---------
YAB1
xxxxxxxxxxxxxxxx
----->
LBD16
--------->
ANAC58
--------->
SPL1(1)
--------->
ATHB12
---
ATERF1(1)
--------->
ANAC58
<---------
SPL7
<-----------------
AGL3
-
xxxxxxxxx
smallRNA(s)
<---------
GLK1(1)
<---------
ZAT14
--------------->
AGL15
-
====================================================================================
MADS_MADS
----
->
DEAR3(1)
---------->
DOF2
--------->
ANAC58
--------->
ZAT14
<---------------
AGL15
--------->
MYB46(3)
>
ERF1
<---------
HSFB2a(2)
--------->
ANAC58
<------------------
SPL14
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
gcaaatgcttgtggaaaggaatttttgaaatccagcaatttcgaacagttcgaaactgtacggagcagtttctatgattggtaccaaccgctaacaacta
16743400
<-------
GAMYB
-------->
P
--------->
MYB111(2)
--------->
MYB55(1)
------->
GAMYB
--------->
MYB55(2)
--------->
MYB46(3)
<---------
DOF5.7(2)
<---------
At4g35610
--------->
DOF5.7(2)
--------->
MYB111(1)
--------->
ANAC58
<---------
MYB52(1)
<---------
MYB46(3)
--------->
ANAC46
<-------
GAMYB
<--------
P
--------->
ANAC58
------>
MYB46(1)
<-------
GAMYB
---------->
DOF2
------>
MYB83
<---------
MYB52(1)
<---------
ATHB12
------>
MYB46(1)
--------->
DEAR3(1)
--------->
MYB55(2)
------>
MYB46(1)
------>
MYB83
----------->
HVH21
<---------
MYB46(3)
------>
MYB83
------->
GAMYB
------->
GAMYB
--------->
MYB46(3)
--------->
WOX13(1)
--------->
ANAC58
--------->
MYB46(3)
<------
MYB46(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC46
xxxxxxx>
smallRNA(fl3)
--------->
ALFIN1
<-----------
GT1
<-----------
GT1
--------->
ANAC58
-------->
MYB46(3)
<------
MYB83
--------->
At4g35610
--------->
MYB52(2)
--------->
ANAC46
-------->
DEAR3(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------->
ID1
--------->
MYB46(3)
----->
MYB46(3)
------->
GAMYB
--------->
At4g35610
<---------
MYB52(1)
--------->
ZAT6
-------->
P
caaccgaccgttaacaaccgctaggtggttgttagcagataaaccaatcaagccattagttgttttgtcttaacaatacacaaaacaacccacttaatat
16743500
<----------
DOF2
---------->
DOF2
--------->
ANAC58
-----
--------->
ANAC58
<-----
--------->
ANAC46
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
================
<----------
DOF2
--------->
SPL7
*
TSS
================
<-------
MYC3
<----------
DOF2
--------->
TOE2(2)
---------->
ID1
-------
------->
MYC3
---------->
ID1
--------->
TOE1(2)
<----------
DOF2
<------
ttgggcttaacatataacacatggcccatttgtctctttcttctttctaattcttcctacgacaaagctttctctttg
tccctcttcctcttctacgatc
16743600
<-----------
RAV1(1)
<----------
DOF2
===========================================
bZIP_DOF
<----
->
ZmHOX2a(2)
---------
-
ZmHOX2a(2)
<--------
=
HOX2a_HOX2a
<---------
CCA1(2)
<------
ZmHOX2a(1)
--------->
YAB1
==
HOX2a_HOX2a
--------->
TGA1a
<-----------
GT1
--------->
AHL20(2)
-->
ARR11(3)
--------->
O2
----------->
GT1
<---------
ARR11(3)
---
ARR11(3)
<---------
ALFIN1
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
tcttcttctctctttgttgcagtctcttctcatcttctccactctcgtctctcaagtatggttaattacaggattaatttccaacatctattatatatat
16743700
<------
-------
<---------
AHL20(2)
<------
<---------
AHL20(2)
<------
<---------
AHL20(1)
<---------
AHL20(2)
<------
--------->
AHL20(2)
<---------
RVE1(1)
<---------
HSFB2a(1)
<---------
YAB1
<---------
CCA1(1)
--------->
HSFB2a(1)
--------->
ICU4
<---------
ANAC55(2)
--------->
ARR11(3)
--------->
HSFC1(2)
-----
AHL20(2)
<---------
ICU4
<---------
RVE1(1)
<---------
ARR11(3)
<---------
HSFC1(2)
>
AHL20(2)
--------->
YAB1
<---------
ARR11(3)
---------->
DOF2
--------->
AtLEC2
-
AHL20(2)
<---------
ATHB12
--------->
ARR11(3)
<---------------------
WRI1
<---------
AtLEC2
aaactcgttgaaatcataatttttttcttcagatattaagtaaacaaattggccatcgacgagagactcaaag
gtattttttcttccatggaaatttcgt
16743800
<------
MYB83
<---------
HSFB2a(2)
<------
MYB46(1)
--------->
HSFB2a(2)
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
MYB52(1)
<---------
AGP1
<---------
ZAT14
--------->
ARR11(3)
<---------
WRKY38(1)
---
ANAC46
<---------
AHL20(2)
---->
GT1
--------->
AHL20(2)
---------
---
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AtMYB61
---
ANAC55(2)
--------->
AHL20(1)
--------->
ICU4
--------->
ANAC58
---
ANAC58
<---------
AHL20(1)
--------->
ATHB12
<---------
ANAC46
--------->
ZAT14
--
gaaattgatctggaaacttgtttggatatatattttcgaaggaagtttgatttgaattgtagtttgagtgaaatatttatatagtgaacggaaggtgttc
16743900
--------
---------
<---------
WOX13(1)
<----------
DOF2
---------->
DOF2
<---------
MYB52(1)
>
ALFIN1
----------->
HVH21
<---------
YAB1
<----------
DOF2
------->
ANAC46
<---------
MYB52(1)
------->
TEIL
--------------->
AtSPL8
<---------
DAG2
--------
gacgaaatgcctgaaagagctgttttgttgtatgattctgtatgtttgtgttgagcatagtacaatctagttttatggtcacctttagctttgaatgatg
16744000
<---------
ZAT14
--------->
ZAT14
---------->
DOF2
--------
--------->
REM1(2)
--------->
At4g35610
<--------
<---------
YAB1
--------->
ALFIN1
<----------
CDC5
---------
<---------
YAB1
<------
NtERF2
<---------
At4g35610
--------->
HSFB2a(2)
->
YAB1
--------->
ICU4
------>
NtERF2
--------->
ALFIN1
<---------
HSFB2a(2)
>
ICU4
----------->
GT1
<---------
ANAC46
--------->
ANAC46
--------->
DAG2
------->
PIF5
->
ATHB12
--------->
ATHB12
<---------
AtLEC2
---------->
DOF2
<-------
PIF5
agttctaaatagtgatttgatgatgagtgtag
agagacccatctcc
atggcaccaaggtggaaatggaaaggtgctgaggcaaaggcacttgcagaacct
16744100
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AGI:
At3g45590.1
Description:
ATSEN1 (SPLICING ENDONUCLEASE 1); tRNA-intron endonuclease. Identical to tRNA-splicing endonuclease subunit Sen2-1 (SEN1) [Arabidopsis Thaliana] (GB:Q9M1E8;GB:Q9S7L3); similar to SEN2 (SPLICING ENDONUCLEASE 2), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT5G60230.2); similar to SEN2 (SPLICING ENDONUCLEASE 2), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT5G60230.1); similar to unknown [Populus trichocarpa] (GB:ABK93461.1); contains InterPro domain tRNA-intron endonuclease; (InterPro:IPR006676); contains InterPro domain tRNA intron endonuclease, catalytic C-terminal; (InterPro:IPR006677); contains InterPro domain Endonucl
Range:
from: 16743579
to: 16744839
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.