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Chromosome 1
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Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ICU4
<---------
ANAC46
<---------
ZAT18
<---------
YAB1
<---------
DAG2
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
<---------
AHL20(2)
<---------
ANAC58
----------->
GT1
--------->
ZAT18
--------->
TOE2(3)
<---------
ANAC58
--------->
AHL20(2)
<-----------
HVH21
--------->
TOE2(3)
<----------
DOF2
<----------
DOF2
<---------
ATHB12
---------->
DOF2
<------
NtERF2
caaaactttaattgcaaaaaacttttttcttgtgtctaataaatccattaaacacatccccaaagttaaatgtcaatggggcagagtgcaaccttgttta
15942700
<xxxxx
<---------
<---------
==========
<---------
DAG2
--------->
ATHB51
<---------
TOE1(2)
<--------
ATHB1
<---------
HSFB2a(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
HSFB2a(2)
<---------
AHL20(2)
<---------
ICU4
--------------->
AtSPL8
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<--
--------->
ICU4
<---------
YAB1
<---------
AHL20(1)
<---
<---------
ICU4
--------->
ICU4
<---------
AHL20(2)
-----
--------->
ANAC55(2)
<-----------
RAV1(1)
--------->
YAB1
<---------
ANAC58
--------->
TOE2(1)
<-----------
GT1
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC58
--------->
TOE1(1)
<---------
AHL20(2)
<---------
ANAC55(2)
<---------
ANAC58
<----------
DOF2
--------------->
AtSPL3
ctcttatttacataattaatagcttaagtaacatgttggacaatttcgcttgctccataataatttctttttccttgcattttatttctcgtactttata
15942800
--------->
ANAC58
--------->
ANAC58
xxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ANAC46
-
DOF2
----------->
RAV1(1)
<---------
ANAC46
------
AGL15
--------->
AtMYB61
--------->
ALFIN1
---------->
DOF2
=========================================================
MADS_MADS
----------->
GT1
-------
YAB1
<---------
TOE2(1)
<-----------
RAV1(1)
----------->
TBP
------
TOE2(3)
<---------
TOE1(1)
--------------->
AGL15
<---------
AHL20(2)
-
---->
YAB1
<-----------------
AGL1
<---------------
AGL15
--------->
AHL20(2)
<----
atgttagacaaactctttggtccgatgtggaaaaccacacaagacttaatttagtaaatgtggggtttaccaaaacatataaatagttaaacaaagtaga
15942900
--------------->
AGL15
<---------------
AGL15
----------------->
AGL3
<---------
AtLEC2
<-----------------
AGL3
-
<------------
CBF
<----------
DOF2
--------->
ICU4
<
---------->
GT1
---------->
DOF2
<---------
ANAC58
<-----------------
AGL2
---------->
ID1
--------
CBF
---------->
DOF2
<---------
ANAC58
----------------->
AGL2
<----------
DOF2
--
ttgggttattagtttgggttaaagaaaagcttgaattggttttgcatgttcctttgcattctaaatatagttagtcatgtttttcttttgtcacatttat
15943000
--------->
YAB1
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
YAB1
<---------
DAG2
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
---------->
DOF2
----------->
GT1
<---------
YAB1
--------->
TOE2(3)
--------->
ANAC46
<---------
TOE2(3)
--------------->
AtSPL8
<----------
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
----->
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
------------>
CBF
--------->
ANAC46
---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<----------
DOF2
--------->
ANAC58
------->
TOE2(3)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ANAC58
------
tccttaggttaatttataataaaggaggtatttcatgtactatcattccttctccctttcctttacaattagttgaaaaacacacaaaagtcgctcaaca
15943100
<-
----
<---
--------->
HSFB2a(2)
--------->
TOE2(3)
--------->
LBD16
<----------
DOF2
<-
<---------
ATHB12
<---------
HSFB2a(2)
<---------
ANAC46
------>
MYB46(1)
<-----------
GT1
----------->
ARR10
xxxxxxx
------>
MYB83
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<-------
<---------
MYB59
<---------
YAB1
--------->
At4g35610
<---------
ARR14(2)
--->
MYB46(3)
<---------
MYB46(2)
<---------
ATHB12
<---------
At4g35610
--------->
TCP20
acttgtgtaacaagagcaaa
atggattaccaaacattagagattgaagacccaaatgatgttaacattcccgatgctgagaactgctttgtggaaccagg
15943200
--------->
YAB1
--------->
TOE2(3)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
SPL7
--------->
ZAT18
<---------
ZAT18
<
------>
NtERF2
--------->
ZAT18
--
<---------
At4g35610
--------->
ARR14(2)
<-
--------->
At4g35610
--------->
REM1(2)
<xxx
-----
MYB83
<---------
ANAC46
<---
----->
ALFIN1
<---------
ANAC58
-----
-----
P
--------->
ZAT14
--------->
ZAT14
<---------
ANAC58
<-------
-----
MYB46(1)
------>
ZmHOX2a(1)
<---------
ANAC46
--------
xxxxxxxxx>
smallRNA(i)
<---------
ANAC58
<-----------
GT1
<---------
ANAC58
<--------
----
RAV1(2)
<-----------
GT1
<---------
ARR14(2)
<---------
ETT(2)
<---------
ATHB12
ttgggctgccctgttcaccctcctagccgtgtacgctatcttattttccatcgacaatttgttttcttgtaaggccaacttctcaatccaatctatatcc
15943300
------>
ZmHOX2a(1)
------>
NtERF2
<---------
ALFIN1
--------->
DEAR3(1)
<---------
ATERF1(1)
------>
NtERF2
------>
ZmHOX2a(2)
--------->
DEAR3(1)
----------->
GT1
<----
--------->
ANAC46
--------->
ARR14(2)
xxxxxx
<---------
LBD16
<---------
ARR14(2)
<---------
ANAC58
---------
ATERF1(1)
--------->
ALFIN1
<---------
ANAC55(1)
------->
ARR14(2)
--------->
ALFIN1
--------->
ANAC55(2)
--------
ARR14(2)
<---------
ANAC46
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ANAC55(2)
--------
HVH21
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ARR14(2)
---->
ANAC46
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<----------
DOF2
--------->
ARR14(2)
--
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
------>
MYB46(1)
------->
TEIL
<xxxxxxx
->
ARR14(2)
--------->
At4g35610
<---------
AHL20(2)
<---------
DAG2
<xxxxxxxxxxxxxxxxxxxxx
-
CCA1(2)
===========================
HOX2a_HOX2a
------>
MYB83
<---------
YAB1
<--------
gtctccgcctcctcttctgaatcggtgtggatcgtatatttcattgtgaagaaacctagctttatgtgttctatctcttatgaacgcgaatacgtgtcag
15943400
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
LBD16
<---------
ARR14(2)
--------->
ANAC58
--------->
ANAC58
<-
--------->
ANAC46
--
<---------
ZAT18
<---------
REM1(2)
<-
--------->
ZAT18
--------->
HSFB2a(1)
--------->
ARR14(2)
<---------
At4g35610
--------->
YAB1
------>
MYB83
<----------
DOF2
<---------
ZAT2
--------->
TOE2(3)
<---------
DOF5.7(2)
<<<<<<<<<<<<<<<<<
LFY
<-----------
GT1
--------->
At4g35610
<---------
ATHB12
----------------------->
TaNAC69(2)
<---------
ANAC58
----------->
RAV1(2)
-----
At4g35610
---------->
DOF2
------>
MYB46(1)
--------->
ANAC55(2)
--------->
ZAT2
xxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AtMYB61
<---------
LBD16
<------
NtERF2
--
xxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
MYB46(3)
--------->
MYB52(1)
<---------
RAP2.6(2)
xx
smallRNA(fl3)
--------->
DAG2
--------->
ZAT6
<---------
ANAC58
--------->
LBD16
<----
---
HVH21
<---------------
AGL15
--------->
ANAC46
<---------
HSFB2a(1)
<---------
GLK1(2)
<---------
LBD16
<--
ccaatcttagtcccctaaaaagtgccattgtaaacgtctctcactaccaacgttccaatggcttcacggatttttccgtggttttcgcggctgagactga
15943500
--------->
MYB46(3)
<<<<<<<<<<<<<<<<<
LFY
------>
MYB83
------>
MYB46(1)
<---------
At4g35610
--------->
ANAC58
--------->
At4g35610
--------->
ANAC58
--------->
TOE2(3)
--------->
MYB46(3)
<---------
MYB52(1)
<---------
YAB1
-------
XXXXXXXXXXXXXXXXXXXX>
MIR3440B-3P
--------->
YAB1
--------
--------
ARR11(3)
----------->
GT1
--------->
TOE2(3)
<-------
------->
ARR11(3)
--------->
ANAC58
<<<<<<<<<
ARR1
------>
NtERF2
--------
ARR14(2)
--------->
ANAC58
<<<<<<<<<
ARR2
--------->
LBD16
------->
ARR14(2)
--------->
ANAC46
<---------
ETT(2)
<---------
LBD16
-----
TOE2(3)
--------->
MYB52(1)
<-----------
RAV1(2)
<---------
At5g28300
----
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<-----------
GT1
--------->
YAB1
<---------
ANAC46
ggatattggaccagccaatggaagcaacgttatttcaggtgtctacaatcttaatattacacttctcatgaagcataaacaaattgccgcgaacaacaaa
15943600
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AGI:
At3g44230.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22160.1)
Range:
from: 15943121
to: 15943735
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.