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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<
--
--------->
YAB1
<-------
--------->
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
AHL20(2)
----------->
GT1
<---------
AHL20(1)
--------->
AHL20(1)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
<---------
TOE1(3)
----------------->
AGL3
<---------
ARR11(3)
---------
--------->
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ARR11(3)
<--------
<---------
TOE2(3)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<-------
TEIL
--------->
AHL20(2)
atcaaataagattaacgtaaatagcacaaaaaattttgttttcaaaaatagcacctcatttgaaaagtttcataaatatcatccaaaaaattaattaaat
15666000
--------->
YAB1
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
>>>>>>>>>
E2Fc
--------->
AHL20(2)
------>
NtERF2
<---------
AHL20(2)
--------->
LBD16
<---------
YAB1
--------->
ANAC58
--------->
ICU4
<<<<<<<<<<
E2Fa
<---------
YAB1
--------->
ANAC58
--------->
AHL20(2)
<---------
LBD16
--------->
AHL20(1)
>>>>>>>>>>
E2Fb
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
<---------
AHL20(1)
<---------
RVE1(1)
---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
------->
AHL20(2)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
AHL20(2)
--
AHL20(2)
<---------
AHL20(2)
----------->
GT1
>>>>>>>>>
E2Fd
<---------
MYB52(1)
<---------
GLK1(2)
>
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
ANAC46
--------->
LBD16
--------->
ARR11(3)
-
AHL20(2)
--------->
YAB1
---------->
DOF2
<-----------
GT1
--------->
ANAC46
---------->
DOF2
attaaatataaataactaatataattaatattaataaagaaaagtatatatttcccgccaaaaaattatccgtcaattttttcgcaaaaaaagattttta
15666100
<------
NtERF2
<---------
MYB46(3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
LBD16
<---------
AHL20(2)
<---------
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
--------->
At4g35610
------>
NtERF2
<-----------
HVH21
<---------
YAB1
<---------
At4g35610
<---------
RAP2.6(2)
<----------
DOF2
<---------
AHL20(2)
<---------
DEAR3(1)
---
--------->
RAP2.6(3)
<---------
GLK1(2)
--------->
AHL20(2)
<---------
LBD16
--------->
YAB1
tcaacaaatttcggccaaaataaatccgtcaaattcttttttttttttattaattagtcgagcagatgggcgggtctattttagttcaaagataaaaaat
15666200
<----------
DOF2
<------
MYB46(1)
<---------
DAG2
--------->
AHL20(2)
<------------
<---------
AHL20(1)
<---------
At4g35610
<---------
AHL20(2)
--------->
At4g35610
<---------
ALFIN1
<---------
RVE1(1)
<---------
ICU4
--------->
DAG2
<---------
CCA1(1)
<--------
HAHB4
<
---------->
DOF2
<---------
YAB1
--------->
ARR11(3)
--------->
ATHB12
--
--------->
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
--------->
YAB1
<--
------>
WOX13(1)
<---------
AHL20(2)
--------->
ANAC46
<------
MYB83
--------->
GLK1(2)
----
caattacaaaaagtaccacttggattaaaattttgtttgtaaaacaacaccactgagatattttatttggttctcttcagaatcatttcagctttatttg
15666300
-
<---------
KAN4(2)
------>
ZmHOX2a(1)
--
--------->
YAB1
<---------
YAB1
--------->
AHL20(1)
<----------
DOF2
--------->
YAB1
--------->
AHL20(2)
<------
<---------
DAG2
<---------
ICU4
*
TSS
----------->
GT1
---------
<----------
DOF2
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
-----
AGL3
<-----------
GT1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
------
NtERF2
<----------
DOF2
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
---->
NtERF2
<---------
DAG2
<---------
ATHB51
<---------
AHL20(2)
--------->
AHL20(2)
-------
RAP2.6(2)
--------->
TOE2(3)
--------->
ICU4
--------->
AHL20(2)
--------->
YAB1
------
------>
ID1
--------->
TOE2(3)
--------->
LBD16
--------->
TOE2(3)
--------->
AHL20(2)
--------->
ICU4
---
gcgcctttagaataacctttttcttaaaatcatccgaagaaaataattatcctaaaaacaaattaaataa
ttttggaatgaaataaaaattaaattatca
15666400
--------->
YAB1
<---------
HSFB2a(2)
--------->
ICU4
------>
ZmHOX2a(1)
<---------
At4g35610
<-----------
RAV1(1)
<---------
ICU4
--------->
HSFC1(2)
--------->
MYB46(3)
--------->
YAB1
--------->
HSFB2a(1)
------->
P
<------
ZmHOX2a(2)
--------->
MYB46(3)
------->
WOX13(1)
=====================================
HOX2a_HOX2a
--
---
YAB1
<---------
ATHB12
<---------
HSFC1(2)
--------->
ATHB12
>
YAB1
--------->
ARR14(2)
<---------
HSFB2a(1)
<---------
YAB1
--->
YAB1
<---------
ARR14(2)
<---------
YAB1
------>
MYB83
<---------
ZAT14
======
------>
MYB46(3)
<---------
MYB46(3)
<---------
ATHB12
------>
MYB46(1)
--------->
ZAT18
------
tcaaccagtccgactcagtggttccgatc
atggccgatgatgagtcaagaaccatcctgttggagaagaacgaagactgccctggctgtatcattgatcg
15666500
------->
GAMYB
--------->
MYB52(1)
------->
TEIL
----------->
RAV1(1)
<---------
ALFIN1
<---------
ANAC58
<----------
DOF2
--------->
ANAC46
<---------
ANAC58
<---------
ANAC46
---------->
ID1
------>
MYB46(1)
<---------
ANAC58
<---------
ANAC58
<---------
RVE1(1)
------>
MYB83
------>
ZmHOX2a(1)
----------->
RAV1(2)
<---------
CCA1(1)
--------->
AtLEC2
<---------
ANAC58
<---------
At4g35610
--------->
ARR11(3)
--------->
ANAC58
<---------
ANAC58
--------->
At4g35610
>>>>>>>>>
GT-1
<-----------
GT1
--------->
ANAC58
--------->
MYB52(2)
------>
ZmHOX2a(1)
----------->
GT1
<-----------
GT1
------->
MYB46(3)
<---------
ANAC58
--------->
AtMYB61
<---------
ZAT14
<---------
GLK1(2)
<-
==============================
HOX2a_HOX2a
--------->
REM1(1)
--------->
ZAT14
<---------
ARR11(3)
<----
>
ZmHOX2a(2)
<---------
ANAC58
<---------
ALFIN1
<-----------
HVH21
<---------
TOE2(3)
--------
aaccaagcaacagcaacgaggcgttccttacttgcacctctccttcatctggctcgtgtcactctgcactg
gttaataagattttttctccttttgtgct
15666600
--------->
ARR14(3)
<---------
ARR14(3)
<-----------
ARR10
--------->
ARR11(3)
---------
<---------
ANAC46
<---------
ARR11(3)
<---------
AHL20(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
AHL20(2)
<---------
ANAC58
<<<<<<<<<
SARD1
--------->
ARR14(2)
<---------
AHL20(2)
<
----------
RAV1(1)
<----------
DOF2
--------->
At4g35610
<---------
ARR11(3)
<-------
------
DOF2
<---------
TOE2(3)
<<<<<<<<<
CBP60g
<---------
CCA1(2)
<---------
AHL20(1)
--------
-->
ID1
<---------
ANAC46
---------->
DOF2
<---------
At4g35610
<---------
CCA1(2)
---------
tttgttgtgtgtttcttatactaatgtttcaaagcttttgccaaatttcag
ctcttccaatatcttcactgtttccatatatttatttcatg
gtaagcta
15666700
<---------
ANAC58
<---------
REM1(1)
<------
ZmHOX2a(2)
<-----------
RAV1(1)
--------->
ARR14(2)
<---------
MYB46(3)
<---------
ARR14(2)
>
ANAC58
<---------
ANAC46
<---------
ZAT14
<---------
At4g35610
---------
MYB46(3)
<------
MYB46(1)
<-----------
RAV1(1)
--
At4g35610
<------
MYB83
--------->
ANAC55(2)
->
At4g35610
<---------
ANAC58
<---------
ANAC55(2)
---------->
DOF2
>
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
KAN4(2)
--------->
At4g35610
agttgttgttgcttctaactccattgaattagcttggtttgagtttagagaatgaccaatatgtattgtggcag
atcagagacttccatatagcaaaaca
15666800
<---------
YAB1
--------->
GLK1(2)
--------->
ARR11(3)
--------->
CCA1(2)
<---------
ANAC46
<---------
ARR11(3)
<---------
ARR14(3)
<---------
ANAC58
--------->
ARR14(2)
--------->
ARR11(3)
<--------
P
<---------
ARR14(2)
--------->
ARR14(2)
---------->
ID1
<---------
ANAC58
<---------
GLK1(2)
<---------
ARR11(3)
<--------
P
<-------
GAMYB
--------->
HSFC1(2)
<---------
ARR14(2)
<------
MYB46(1)
<---------
MYB46(3)
<---------
HSFB2a(1)
--------->
ARR14(3)
<------
MYB83
<---------
TOE2(3)
<---------
HSFC1(2)
<
----------->
ARR10
<-----------
RAV1(1)
<----------
DOF2
--------->
HSFB2a(1)
<-----
agaagaagatattggtttctatgctggttttgttg
gtaagttttggctctttgtggttgcttgaaaactaatcttggaagattcttgatgttgataactt
15666900
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AGI:
At3g43790.1
Description:
ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 2); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter. similar to ZIF1 (ZINC INDUCED FACILITATOR 1), carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT5G13740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46209.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196)
Range:
from: 15666371
to: 15669981
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.