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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
------------------------>
ANAC81
--------->
CCA1(2)
<---------
GLK1(1)
<-----------
HVH21
--------->
ARR14(2)
--------->
TOE2(3)
<---------
ARR14(2)
<---------
YAB1
--------->
TOE1(3)
<------
MYB83
-----
<------
ZmHOX2a(1)
---------->
DOF2
--------->
GLK1(1)
----------->
GT1
------
---->
TOE1(2)
---------->
DOF2
--------->
YAB1
---------->
DOF2
-------->
P
<------
MYB46(1)
<-----
caagagaggatatgagtaaaagagaagaaaagaatcaaaattgggaagaaaagagagaaaccctaac
cagggtcacattgttggtaaaactcttgaacat
14890400
<---------
ARR11(3)
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC58
<---------
ARR11(3)
----------->
GT1
--------->
ARR11(3)
--------->
DAG2
<---------
ARR14(2)
---------->
DOF2
---------->
DOF2
--------->
ANAC58
<------
ZmHOX2a(1)
--------->
YAB1
----------->
ARR10
<
--------->
ANAC58
=======================
HOX2a_HOX2a
--------->
At4g35610
----------->
GT1
---->
At4g35610
--------->
MYB59
<---------
ATHB12
<---------
AGP1
<---
--->
ARR11(3)
--------->
WOX13(1)
--------->
WOX13(1)
--------->
AGP1
-----
----
ARR11(3)
<---------
ATHB12
------>
ZmHOX2a(2)
---------->
DOF2
--------->
ARR11(3)
ctgcaagaaaagcaaaaactcaaatcaattaggaaattgaacatagatcggagaagataacaatcactagaagcagaaagatctgagaagatagtgaaat
14890500
---
--------->
ARR14(2)
<---------
MYB46(3)
<---------
ARR14(2)
<---------
AtMYB61
--------->
ZAT2
<---------
DEAR3(1)
<---------
ZAT2
--------->
ALFIN1
<----------
DOF2
<---------
At4g35610
<---------
MYB52(1)
------>
NtERF2
--------->
At4g35610
<---------
LBD16
<---------
TOE2(1)
<------
ZmHOX2a(1)
---
<---------
At5g28300
<---------
SPL7
--------->
GLK1(1)
--------->
HSFB2a(2)
-----
-----------
GT1
--------------->
AtSPL3
--------->
TOE2(3)
<---------
HSFB2a(2)
<-------
------
ICU4
----------->
HVH21
--------->
DEAR3(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
---->
ICU4
<----------
DOF2
--------->
SPL7
<---------
GLK1(1)
----------->
HVH21
<---------
At4g35610
ttttac
cggtggtgagagctttgacaatggcagtacgacgacctttgaaatccttgaaaacttcttcgacagttcgaggattgtagagagcagctccacc
14890600
<--
---
---
---
---
----
-----
<-----
------
<-----
<------
NtERF2
------>
ZmHOX2a(2)
<----------
ID1
------>
NtERF2
--------->
ARR11(3)
--------->
GLK1(2)
<--------
ATHB1
<---------
ABI4(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ATHB12
--------->
ZAT2
--->
MYB83
<---------
GLK1(2)
--------->
ATHB51
--------->
At4g35610
--->
MYB46(1)
--------->
ANAC58
<---------
ICU4
--------->
DAG2
---->
AtMYB61
--------->
ANAC58
<---------
YAB1
---------->
DOF2
--
ALFIN1
--------->
ANAC46
--------->
ICU4
================
ttccat
gatctctcgcttcgctcgctcgatctaagaaacgcagagagaatctctcagagggaatagaataattgaagaagacgaagaaaaagctgcgccg
14890700
--------->
bZIP60(1)
<---------
bZIP60(1)
--------->
O2
<---------
bZIP60(2)
--------->
TGA1a
<---------
TGA1a
--------->
REM1(2)
----------->
TGA1
----------->
HVH21
*
TSS
-------
ETT(2)
<---------
ANAC58
-------->
HVH21
---------->
DOF2
------>
ETT(2)
<---------
WRKY38(1)
----
------>
WRKY12
------>
ZmHOX2a(2)
<---------
WRKY12
----
------>
WRKY38(1)
<------
ZmHOX2a(2)
<---------
WRKY45
<---
----->
ALFIN1
<---------
ARR14(2)
<<<<<<<<<<
WRKY18
-----
---->
LBD16
--------->
ARR11(3)
--------->
WRKY18(1)
---------
----
O2
<---------
O2
<<<<<<<<<<
WRKY40
<---------
DEAR3(2)
--->
DEAR3(1)
<---------
ARR11(3)
<<<<<<<<<<
WRKY62
<---------
MYB46(3)
----
ANAC46
--------->
ARR14(2)
<---------
AHL20(2)
<---------
ANAC46
--------->
ETT(1)
================
bZIP_DOF
<---------
YAB1
<---------
ANAC58
<-----------
HVH21
tggaccgtgacgagacccgatcttgtttttcttctaagtctttggattattttttggtcaaagagaatt
gggtgtttttggttcgggtcgggtcataaat
14890800
------------>
CBF
<---------
ANAC55(2)
----->
AHL20(2)
<------
ZmHOX2a(1)
--------->
ANAC55(2)
----->
AHL20(1)
--------->
WOX13(1)
<---------
DAG2
--------->
TOE2(3)
------
AHL20(1)
------------>
CBF
<----------
DOF2
<----------
DOF2
---->
YAB1
<---------
ATHB12
<-----------
GT1
<---------
ICU4
<-----
>
ICU4
---------->
DOF2
--------->
YAB1
--------->
ZAT6
--------->
ICU4
<XXXXXXXXXXXXXXXXX
ataatccaatatgaagcccaaaagcccaaatcaattagaattaggatttactctacttttttttggtaatctttaatatcaagtatcaatttgatttctt
14890900
---------->
DOF2
<---------
At4g35610
<<<<<<<<<<
WRKY43
--------->
ZAT2
<<<<<<<<<<
WRKY26
--------->
At4g35610
<<<<<<<<<<
WRKY38
<---------
ZAT2
----------->
GT1
<-----------------
AGL1
<------
MYB83
<-----------------
AG
<------
MYB46(1)
<---------
At4g35610
--------->
MYB59
<---------
ARR11(3)
-----
DOF2
<-----------
GT1
<------
ZmHOX2a(1)
--------->
TOE2(3)
<----------
DOF2
<---
XXXX
MIR393A/B
--------->
At4g35610
--------->
ARR11(1)
--------->
ARR11(3)
<---------
ARR11(3)
tcgatatcaatttttcatctccagcttaggaaagtatagatttggtcaaatattcttaattgttgtatatattcgacattctttcagtcaatatcaattt
14891000
<---------
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ATHB51
--------->
AHL20(1)
<---------
AHL20(2)
--------->
ICU4
<---------
YAB1
>>>>>>>>
----------->
GT1
--------->
TOE2(2)
--------->
GLK1(2)
----------->
GT1
--------
RAV1(1)
----------->
GT1
>>>>>>>>>
MYB98
<---------
KAN4(1)
--------->
CCA1(2)
------
tgtggctagaaattttaagaccgtagacgggaaattttttgtttaacatatgaaattatgaataatctataataaattggatacaaaaattgtttaacat
14891100
<---------
ICU4
<---------
ZAT6
<---------
YAB1
-
--------->
YAB1
----------->
GT1
<-------
GAMYB
<-----------
GT1
--
>
MYB98
<-----------
GT1
<---------
ANAC58
----------->
GT1
----------->
GT1
------
--->
TOE2(2)
<-----------
GT1
<---------
ANAC58
<---------
ZAT6
<---------
ATHB12
<-----
atgaataatcacatgttttttaacatgtgatatagtaacttgtgttattttcgttgttgtgttattatccaaattcaaatcagtataaaacttgttaaca
14891200
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(2)
<---------
YAB1
--------->
ARR11(3)
<---------
ARR11(3)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
DOF2
<---------
YAB1
<-------
TEIL
<---------
AHL20(2)
------->
AHL20(2)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
ARR11(3)
--------->
AGL15
<---------
WOX13(1)
<-----------
HVH21
--------->
AHL20(1)
----------
AGL15
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(1)
-------
aataaagaaaacaaatattttggtgattaatataaattttatataaaaactgtgagatacaaaatgaagtattcaatatataaatatcattaaaaaataa
14891300
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AGI:
At3g42790.1
Description:
PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD finger/nucleic acid binding protein [Olimarabidopsis pumila] (GB:ABA18096.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:
from: 14888946
to: 14890769
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.