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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<--------
<-------
TEIL
--
<-----------
GT1
--------->
AHL20(1)
<-
------>
ZmHOX2a(1)
--------->
AHL20(2)
<--
--------->
YAB1
<-----------
GT1
<---------
AHL20(2)
<---
<---------
TOE2(3)
<-----------
GT1
<---------
AHL20(2)
----
--------->
DOF2
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<---
----->
TOE2(3)
<------------------------
ANAC81
--------->
AHL20(2)
--------->
YAB1
cttaaaggtattaataacttccattttatcctcttgaatttccttttttat
ctgttatacatatgcaagtttaagtaaattaaattggttcattaacaat
10824800
<---------
bZIP60(2)
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
--------->
CCA1(2)
-
TOE2(3)
--------->
ARR11(3)
------->
ARR11(3)
--------->
ARR14(2)
--------
ARR11(3)
<---------
ARR11(3)
-------
CCA1(2)
<---------
ARR14(2)
------
AHL20(1)
--------->
ARR11(1)
----->
AHL20(1)
<---------
DAG2
----------->
ARR10
<---------
RAP2.6(3)
------
ARR11(3)
<-----------
GT1
---------->
DOF2
<---------
ALFIN1
atatcttcacgttgaagaaacatttac
ctttccaatcgcaaaagaagatatgacttggaagaggcctccagccttggccttcatgtctcggtcgtaatct
10824900
--------->
KAN4(2)
--------->
HSFB2a(1)
<---------
HSFB2a(1)
<---------
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ATHB12
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<--
<---------
YAB1
<---------
AHL20(1)
--------
<----------
DOF2
---------->
DOF2
--------->
AHL20(1)
<----------
DOF2
<----------
DOF2
--------->
ZAT18
---------->
DOF2
<---------
ANAC58
<-------
acttggtcttttctttttattgggcagacatacttggcgaatgccctaagtttctcaaagaaagccttgaatttatttgtcttgggacattctttctcga
10825000
----------->
GT1
<---------
TOE1(3)
<---------
At5g28300
--------->
MYB52(1)
---------->
DOF2
<---------
DOF5.7(2)
------>
ZmHOX2a(1)
----------->
HVH21
--------->
DOF5.7(2)
--------->
TOE2(3)
----------->
RAV1(2)
---------
HVH21
<----------
DOF2
<-------
TEIL
<---------
MYB46(3)
<---------
ANAC58
->
HSFB2a(2)
--------->
TOE2(3)
<---------
ARR11(3)
<-------
TEIL
<---------
ANAC58
--
HSFB2a(2)
--------->
ZAT6
<---------
TOE2(3)
--------->
MYB52(2)
---------->
DOF2
ggtcggacacaaagactatcactactttaacggtgtaaggttcaacatccttcaacgtttgtggaggttcaatctgaggcaaagttggcttaagcttcaa
10825100
<---------
HSFB2a(2)
--------->
YAB1
--------->
ARR11(3)
<---------
At4g35610
---------->
DOF2
>>>>>>>>>>>>>>>>>
LFY
---
--------->
ZAT2
--------->
HSFB2a(2)
----------->
GT1
--------->
At4g35610
<---------
ARR11(3)
--------->
At4g35610
---------->
DOF2
--------->
AHL20(2)
<---------
CCA1(2)
atgagctgaaacgatgtccagaagagtcactgatgcaaaaagaatggtaaagcataaaaatagctgaactcttgccat
tgttatatatcttgttagaaat
10825200
-----
<-------
----------->
HVH21
--------------->
AGL15
--------->
At4g35610
--------->
YAB1
<---------
ZAT18
----------->
RAV1(2)
<---------
YAB1
--------->
ZAT18
------>
ZmHOX2a(2)
<-----------
TBP
<---------
ZAT6
<------
ZmHOX2a(1)
---------
<---------
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
<---------
YAB1
------->
DOF2
<------------
CBF
<----------
DOF2
<---------
ANAC46
=================
HOX2a_HOX2a
aaaagttgaagaatgaaggaattgaaatgggatttttttgtatacttttatagttatgtttagtgttctatgtttaggattactgatcccctgaccattg
10825300
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ANAC58
--------->
ARR11(3)
---------->
DOF2
<---------
TOE1(2)
--------->
YAB1
<-------
TEIL
<---------
ANAC58
<---------
TOE2(3)
<------------
CBF
<---------
AHL20(2)
<---------
TOE2(2)
<---------
ANAC58
------>
GT1
--------->
YAB1
<----------
DOF2
<---------
ANAC46
-----
CBF
--------->
ICU4
<---------
ARR11(3)
<-----------
GT1
<----------
DOF2
>
ATHB12
---------->
DOF2
--------->
YAB1
<-----------
GT1
<------------
CBF
<---------
ANAC58
gtaaattggtggattaaagtcataaataatagtaaagagcttcatggttcttacgtttcacaaatctattgatggtgaagtcttttgcgtttgatgtttt
10825400
<---------
MYB46(3)
<---------
DEAR3(2)
--------->
MYB52(2)
<------
MYB83
<------
MYB46(1)
<---------
AtMYB61
--------->
MYB111(1)
<-----------
TBP
<--------
P
<-----------
TBP
<---------
MYB52(1)
<----------
DOF2
<---------
YAB1
<---------
DAG2
--------->
ARR14(2)
<------------
CBF
<---------
ARR14(2)
<---------
AHL20(2)
----------->
GT1
<------
MYB46(1)
<----------
DOF2
--------->
YAB1
--------->
AHL20(2)
<------
MYB83
<---------
CCA1(2)
ttgtattagttttataaaaattgactttttatatagaaggtttatagaatgaatacatatgaaggctggttctggttggttcccctatctttgacttcta
10825500
<------
NtERF2
--------->
DREB2C(2)
--------->
DEAR3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
RRTF1(2)
--------->
RRTF1(3)
--------->
RAP2.6(2)
--------->
ATERF1(2)
--------->
ANAC46
<---------
ATERF1(2)
--------->
ATERF1(1)
--------->
ERF1
--------->
RAP2.3(1)
<---------
RAP2.3(1)
<---------
ATERF1(1)
--------->
ALFIN1
------>
NtERF2
--------->
ANAC58
<---------
ANAC46
--------->
ORA47(2)
--------->
ANAC58
--------->
YAB1
<---------
YAB1
--------->
At5g28300
<---------
AHL20(2)
----------->
GT1
<-------
TEIL
----------->
GT1
<---------
ALFIN1
cttgattttatcacaaactgtgtgtggtatcattcgccgccatattcattctctatattcgactaatacggtgatttgataagcaagtcggaacacactc
10825600
>>>>>>>>>>
GATA-2
<---------
ARR11(3)
>>>>>>>>>>
GATA-3
--------->
ARR11(3)
>>>>>>>>>>
GATA-1
<---------
ANAC58
>>>>>>>>>>
GATA-4
<---------
ANAC58
--------->
YAB1
<-------
TEIL
<-------
GAMYB
----------->
GT1
<---------
MYB46(3)
--------->
TOE2(3)
--------->
ARR14(2)
--------->
ALFIN1
--------->
TOE1(3)
<---------
ARR14(2)
<-----------------
AGL3
----------->
GT1
<---------
ANAC46
----------------->
AGL3
------>
ZmHOX2a(2)
--------->
ALFIN1
<---------
YAB1
<---------------
AtSPL8
<---------
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
----------------->
AGL2
<----------
DOF2
<
---------->
DOF2
----------->
GT1
xxxxxxxxxxxxxxxx>
smallRNA(i)
<-----------
GT1
<---------
MYB52(1)
tcttcaataaaacagatgggggataggaaatatgataagggactccaaatgtggttcgtatcaagaacttaacctcttttgatcgttaaactgttagcca
10825700
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AGI:
At3g28810.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28820.1); contains InterPro domain Protein of unknown function DUF1216 (InterPro:IPR009605)
Range:
from: 10823708
to: 10825178
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.