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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
TEIL
--------->
HSFB2a(2)
--------->
ALFIN1
---------->
DOF2
------->
MYC3
--------->
AHL20(2)
-
<-------
MYC3
----------->
RAV1(1)
-
----------->
GT1
<-------
MYC2
--------->
DEAR3(1)
--
<---------
ANAC55(2)
<---------
AtLEC2
--------->
DREB2C(2)
--
--------->
YAB1
------->
MYC2
<---------
ETT(1)
<---------
HSFB2a(2)
<---------
YAB1
<--------
ATHB1
--------->
At1g77200
------->
GAMYB
--------
GT1
<-------
TEIL
<---------
ICU4
--------->
DEAR4(1)
--------->
ANAC46
cacaatccaaatgtgattcatagtcaagtgaataattccaacgtgcagggcatcacccataaaaacaccgacaataaaacacttccacaacgacactgat
10562400
--------->
LBD16
<---------
DAG2
<----------
DOF2
------>
MYB83
------>
MYB46(1)
--------->
GLK1(1)
--------->
ANAC46
<---------
GLK1(1)
<---------
MYB55(2)
<---------
ARR11(3)
--------->
MYB46(3)
--------->
ARR11(3)
-------->
ANAC58
<----------
DOF2
<---------
TOE2(3)
-------->
ANAC58
----------->
GT1
---------->
DOF2
---------->
DOF2
----->
TEIL
<---------
LBD16
----------->
RAV1(1)
<---------
MYB52(1)
------->
PCF2
------>
ZmHOX2a(1)
--------->
MYB46(3)
<----------
DOF2
gcacccactacttttcctgaaattgtgactttcgcgactctattttcaacaacaaagtctaagatttcctttagccaaaaagacccatgggtctcttatg
10562500
--------->
ARR14(2)
--------->
DEAR3(1)
<---------
ANAC46
--------->
ATERF1(1)
<---------
LBD16
------>
NtERF2
--------->
DEAR3(1)
<---------
At4g35610
--------->
At4g35610
--------->
ATERF1(1)
<---------
ABI4(2)
--------->
DEAR4(2)
<------
NtERF2
<---------
DEAR3(1)
--------->
At4g35610
<---------
ANAC58
------>
NtERF2
<------
NtERF2
----------->
GT1
<---------
ANAC58
--------->
RAP2.6(2)
<---------
ATERF1(1)
<---
--------->
At4g35610
--------->
ANAC46
<------
NtERF2
----------->
GT1
<---------
At4g35610
--------->
ANAC58
--------->
LBD16
----------->
GT1
<---
--------->
GLK1(2)
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
ZmHOX2a(1)
------>
NtERF2
<------
ZmHOX2a(1)
<---------
ATERF1(1)
--------->
ALFIN1
----
ggaggagagtctgcttgcgacgactgagttggagagggaagagaaggagaagacgccatcggcagcgccggagactccatcggagggggaaaatcgctac
10562600
<xx
------
MYB59
-----
------------
AGL15
<---------
YAB1
--------->
YAB1
------
----->
TOE2(3)
<---------
TOE2(3)
--------->
TOE2(3)
<----------
DOF2
<-----------
GT1
x
cttacaagggatgctagacgatgggagcgactagggtttatgcttcaaaaaacttaaactttcatatttcctttgggataattttaaaaccttctatccg
10562700
<---------
ARR11(3)
--------->
ARR11(3)
--------->
HSFB2a(2)
--------->
GLK1(1)
<---------
MYB52(1)
--------->
LBD16
<---------
ANAC55(2)
<---------
ANAC58
<
<---------
ANAC46
<---------
GLK1(1)
-
<---------
ANAC55(1)
--
----------->
GT1
<---------
RAP2.6(3)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
AHL20(2)
---->
LBD16
--------->
ANAC55(2)
----------->
GT1
<-
--->
ANAC46
<---------
ANAC58
--------->
GLK1(1)
<---------
ARR14(2)
----
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
MYB59
--------->
ARR14(2)
------
aaatagagtgatatagatgccgtgatttcttcaagaactccctaacttcttcttggtaaactgaacaagtagtcagagtatttgtaaatttaaaagtttt
10562800
--------->
ANAC58
--------->
ANAC58
----------->
HVH21
--------->
ANAC46
--------->
SPL7
<------
MYB83
<------
MYB46(1)
<---------------
AtSPL3
<---------
ATHB12
--------->
At4g35610
<---------------
AtSPL8
<----------
ID1
<---------
At4g35610
<---------
WOX13(1)
<---------------
AtSPL8
<---------
ZAT2
<------------
CBF
---------->
DOF2
<-----------
HVH21
---------
ICU4
--------->
ANAC58
--------->
LBD16
--------->
YAB1
<---------
WRKY38(1)
-------->
ATHB12
*
TSS
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
AtLEC2
------->
ICU4
<---------
At4g35610
--------------->
AGL15
<---------
ANAC58
--------
YAB1
--------->
At4g35610
--------->
At4g35610
<---------
ANAC58
<---
----->
YAB1
<---------
ALFIN1
----------->
RAV1(2)
------>
ZmHOX2a(1)
----
----------------->
TaNAC69(2)
<-----------------
AGL1
<----------
DOF2
--------->
At4g35610
catgattggtacgaca
ctgctgaactcaaggaagcattagtaagtctcctgaaaaggaacaaatcatcctttgcctggtcagcagaagacatgtctagca
10562900
------
-------
--------->
ANAC58
--------->
ANAC58
<-----------
HVH21
----------->
GT1
--------->
ANAC58
<---------
YAB1
--------->
ANAC58
<---------
LBD16
--------->
ANAC46
--------->
YAB1
---------->
DOF2
<---------
ZAT2
<---------
ZAT18
------
At4g35610
--------->
ANAC58
---------->
DOF2
--------->
ZAT18
----->
At4g35610
----------->
GT1
--------->
ANAC58
<----------
ID1
---------->
DOF2
-
tctgcccaagtataatttgtcacgagttaaatgtcaacttaagtttcaagcatgtaaagcaaaaacgaagaaagctcgggacagaaagggcacaagcagt
10563000
--------->
ARR14(2)
<------
NtERF2
<------
MYB83
<------
MYB46(1)
<---------
ANAC58
--------->
MYB55(2)
<---------
MYB46(3)
<---------
ANAC46
<-------
TEIL
--------->
LBD16
<--------
P
<------
MYB46(1)
<---------
ARR14(2)
--------->
GLK1(2)
<------
MYB83
--------->
ARR14(2)
<---------
ARR14(2)
<
--->
At5g28300
--------->
MYB59
--------->
GLK1(2)
--------->
WOX13(1)
=
---->
GT1
----------->
GT1
<---------
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
=
---------->
TGA1
--------->
ARR14(2)
--------->
ZAT18
<---------
ANAC58
----------->
GT1
aaatgacgaagtggataaacttctgaagataggttcaataagagaagtccagtatccgtagtgggtggccaatctggttgtcatcaagaagaaaaatgga
10563100
<---------
ANAC58
--------->
DAG2
---------->
DOF2
------>
ZmHOX2a(2)
=============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
ICU4
--------->
ARR14(2)
------>
MYB46(1)
----
<---------
ARR11(3)
<---------
ARR14(2)
--------->
AHL20(2)
<-----------
GT1
============================
HOX2a_HOX2a
------>
MYB83
--------->
YAB1
----------------------->
TaNAC69(2)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
--------->
ORA47(1)
<---
<---------
ANAC46
--------->
AGP1
<---------
ANAC58
------->
GAMYB
<---------
AHL20(2)
<---------
ANAC58
<---------
ARR14(2)
<---------
ANAC58
--------->
DEAR3(1)
<------
--------->
ARR14(2)
<---------
AGP1
<---------
ANAC58
--------->
DEAR3(2)
--------
<---------
ARR14(2)
<---------
CCA1(2)
---------->
DOF2
<---------
MYB52(1)
<---------
TOE2(3)
<---
------
ZmHOX2a(1)
<-----------
GT1
<---------
ANAC58
<----------
DOF2
--------->
MYB46(3)
<--------
================================
HOX2a_HOX2a
--------->
MYB52(1)
--------->
MYB52(1)
<---------
YAB1
=================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<-----------
GT1
--------->
ICU4
taggatagggtgtttatcgatttcacagatctaaaaaaagcgtgcctaaaggatgctttccgttttcgcatattaaccgaccaaggtatttattattata
10563200
--------->
RAP2.6(3)
<----------
DOF2
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
TOE2(3)
--------->
MYB52(1)
--------->
ANAC46
<---------
DOF5.7(2)
<---------
ALFIN1
----->
DAG2
--------->
ANAC46
------
TOE1(3)
--------->
ANAC58
---
AHL20(2)
---------->
DOF2
--------->
ANAC46
->
YAB1
<----------
DOF2
<------
MYB46(1)
--------->
ANAC58
------
------
TOE2(3)
<----------
DOF2
<------
MYB83
<---------
ALFIN1
--------->
ALFIN1
-
YAB1
<---------
DAG2
----------->
GT1
<---------
ALFIN1
<------------
aggtaacgcctttcggcttaaagaatgcagaagtaacttatcaacgcttggtgaaaaaatgttccacacacacctcaaaaagacaatggaggtgtacatg
10563300
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AGI:
At3g28295.1
Description:
transposable element gene. gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
Range:
from: 10562817
to: 10563326
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.