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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                        <-------TEIL                             --------->HSFB2a(2)
                                       --------->ALFIN1                ---------->DOF2
                                      ------->MYC3                     --------->AHL20(2)          -
                                      <-------MYC3               ----------->RAV1(1)               -
                      ----------->GT1 <-------MYC2              --------->DEAR3(1)                --
                      <---------ANAC55(2)<---------AtLEC2       --------->DREB2C(2)               --
              --------->YAB1          ------->MYC2              <---------ETT(1) <---------HSFB2a(2)
         <---------YAB1      <--------ATHB1                     --------->At1g77200    ------->GAMYB
--------GT1  <-------TEIL    <---------ICU4                     --------->DEAR4(1)    --------->ANAC46
 
cacaatccaaatgtgattcatagtcaagtgaataattccaacgtgcagggcatcacccataaaaacaccgacaataaaacacttccacaacgacactgat  10562400
             --------->LBD16
       <---------DAG2
       <----------DOF2
  ------>MYB83
  ------>MYB46(1)                                           --------->GLK1(1)
 --------->ANAC46                                           <---------GLK1(1)
<---------MYB55(2)                                         <---------ARR11(3)
--------->MYB46(3)                                         --------->ARR11(3)
-------->ANAC58          <----------DOF2                 <---------TOE2(3)
-------->ANAC58    ----------->GT1               ---------->DOF2          ---------->DOF2
----->TEIL <---------LBD16                    ----------->RAV1(1) <---------MYB52(1)
------->PCF2 ------>ZmHOX2a(1)               --------->MYB46(3)  <----------DOF2
 
gcacccactacttttcctgaaattgtgactttcgcgactctattttcaacaacaaagtctaagatttcctttagccaaaaagacccatgggtctcttatg  10562500
                                                                   --------->ARR14(2)
                                                                --------->DEAR3(1)
                                                                <---------ANAC46
                                                               --------->ATERF1(1)
                                                               <---------LBD16
                                                              ------>NtERF2
                                                             --------->DEAR3(1)
                                                            <---------At4g35610
                                                            --------->At4g35610
                                                            --------->ATERF1(1)
                                                            <---------ABI4(2)
                                                            --------->DEAR4(2)
                                                            <------NtERF2
                                                          <---------DEAR3(1)
                                                         --------->At4g35610
         <---------ANAC58                         ------>NtERF2<------NtERF2       ----------->GT1
         <---------ANAC58                        --------->RAP2.6(2)<---------ATERF1(1)         <---
        --------->At4g35610                      --------->ANAC46 <------NtERF2   ----------->GT1
        <---------At4g35610                      --------->ANAC58--------->LBD16 ----------->GT1<---
    --------->GLK1(2)                            --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
<------ZmHOX2a(1)------>NtERF2            <------ZmHOX2a(1)<---------ATERF1(1) --------->ALFIN1 ----
 
ggaggagagtctgcttgcgacgactgagttggagagggaagagaaggagaagacgccatcggcagcgccggagactccatcggagggggaaaatcgctac  10562600
                                                                                                 <xx
------MYB59                                                                                    -----
------------AGL15                   <---------YAB1        --------->YAB1                      ------
----->TOE2(3)                <---------TOE2(3)  --------->TOE2(3)  <----------DOF2 <-----------GT1 x
 
cttacaagggatgctagacgatgggagcgactagggtttatgcttcaaaaaacttaaactttcatatttcctttgggataattttaaaaccttctatccg  10562700
                               <---------ARR11(3)
                               --------->ARR11(3)
                            --------->HSFB2a(2)
                     --------->GLK1(1)
                  <---------MYB52(1)
                 --------->LBD16
                <---------ANAC55(2)
                <---------ANAC58                                                                   <
                <---------ANAC46<---------GLK1(1)                                                  -
                <---------ANAC55(1)                                                               --
  ----------->GT1<---------RAP2.6(3)                                                  <---------AHL20(2)
xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   --------->AHL20(2)
---->LBD16      --------->ANAC55(2)                                           ----------->GT1     <-
--->ANAC46      <---------ANAC58--------->GLK1(1)                          <---------ARR14(2)   ----
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB59                       --------->ARR14(2) ------
 
aaatagagtgatatagatgccgtgatttcttcaagaactccctaacttcttcttggtaaactgaacaagtagtcagagtatttgtaaatttaaaagtttt  10562800
       --------->ANAC58
       --------->ANAC58
       ----------->HVH21
       --------->ANAC46
      --------->SPL7
   <------MYB83
   <------MYB46(1)
  <---------------AtSPL3                                   <---------ATHB12  --------->At4g35610
  <---------------AtSPL8                            <----------ID1           <---------At4g35610
 <---------WOX13(1)                               <---------------AtSPL8     <---------ZAT2
<------------CBF                                ---------->DOF2          <-----------HVH21
---------ICU4           --------->ANAC58     --------->LBD16--------->YAB1 <---------WRKY38(1)
-------->ATHB12 *TSS    --------->ANAC58     ------>ZmHOX2a(1)       <---------AtLEC2
------->ICU4  <---------At4g35610           --------------->AGL15    <---------ANAC58
--------YAB1  --------->At4g35610          --------->At4g35610       <---------ANAC58           <---
----->YAB1<---------ALFIN1                 ----------->RAV1(2)   ------>ZmHOX2a(1)              ----
----------------->TaNAC69(2)               <-----------------AGL1<----------DOF2--------->At4g35610
 
catgattggtacgacactgctgaactcaaggaagcattagtaagtctcctgaaaaggaacaaatcatcctttgcctggtcagcagaagacatgtctagca  10562900
                                                                                              ------
                                                                                             -------
                                                     --------->ANAC58                     --------->ANAC58
              <-----------HVH21                      ----------->GT1                      --------->ANAC58
        <---------YAB1                               --------->ANAC58   <---------LBD16   --------->ANAC46
      --------->YAB1                               ---------->DOF2   <---------ZAT2  <---------ZAT18
------At4g35610                             --------->ANAC58      ---------->DOF2    --------->ZAT18
----->At4g35610     ----------->GT1         --------->ANAC58 <----------ID1     ---------->DOF2    -
 
tctgcccaagtataatttgtcacgagttaaatgtcaacttaagtttcaagcatgtaaagcaaaaacgaagaaagctcgggacagaaagggcacaagcagt  10563000
                                                                   --------->ARR14(2)
                                                               <------NtERF2
                                                           <------MYB83
                                                           <------MYB46(1)
                                                           <---------ANAC58
                                                          --------->MYB55(2)
                                                          <---------MYB46(3)
                                                         <---------ANAC46
                              <-------TEIL           --------->LBD16     <--------P
                           <------MYB46(1)       <---------ARR14(2)--------->GLK1(2)
                           <------MYB83          --------->ARR14(2)<---------ARR14(2)              <
--->At5g28300             --------->MYB59        --------->GLK1(2)--------->WOX13(1)               =
---->GT1----------->GT1 <---------ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(i)                         =
---------->TGA1         --------->ARR14(2)  --------->ZAT18<---------ANAC58          ----------->GT1
 
aaatgacgaagtggataaacttctgaagataggttcaataagagaagtccagtatccgtagtgggtggccaatctggttgtcatcaagaagaaaaatgga  10563100
                                    <---------ANAC58
                                 --------->DAG2
                                ---------->DOF2
                          ------>ZmHOX2a(2)
                         =============================HOX2a_HOX2a
                         <------ZmHOX2a(2)                                               <---------ICU4
                        --------->ARR14(2)                                 ------>MYB46(1)      ----
                        <---------ARR11(3)                 <---------ARR14(2)        --------->AHL20(2)
           <-----------GT1============================HOX2a_HOX2a          ------>MYB83  --------->YAB1
        ----------------------->TaNAC69(2)                 --------->ARR14(2)    <---------ARR11(3)
    <---------ANAC58    --------->ARR11(3)              <---------ANAC58  --------->ORA47(1)    <---
    <---------ANAC46    --------->AGP1                  <---------ANAC58 ------->GAMYB<---------AHL20(2)
    <---------ANAC58    <---------ARR14(2)         <---------ANAC58      --------->DEAR3(1)  <------
--------->ARR14(2)      <---------AGP1             <---------ANAC58     --------->DEAR3(2)  --------
<---------ARR14(2)     <---------CCA1(2)   ---------->DOF2<---------MYB52(1)   <---------TOE2(3)<---
------ZmHOX2a(1)   <-----------GT1  <---------ANAC58<----------DOF2     --------->MYB46(3) <--------
================================HOX2a_HOX2a--------->MYB52(1)         --------->MYB52(1)<---------YAB1
=================================HOX2a_HOX2a   <------ZmHOX2a(1)      <-----------GT1--------->ICU4
 
taggatagggtgtttatcgatttcacagatctaaaaaaagcgtgcctaaaggatgctttccgttttcgcatattaaccgaccaaggtatttattattata  10563200
        --------->RAP2.6(3)
     <----------DOF2
  --------->ANAC58                                                        ---------->DOF2
  --------->ANAC58                                                   --------->TOE2(3)
--------->MYB52(1)                                                  --------->ANAC46
<---------DOF5.7(2)                                               <---------ALFIN1
----->DAG2                                                        --------->ANAC46
------TOE1(3)                                                   --------->ANAC58
---AHL20(2)    ---------->DOF2                                  --------->ANAC46
->YAB1<----------DOF2                        <------MYB46(1)    --------->ANAC58              ------
------TOE2(3)<----------DOF2                 <------MYB83       <---------ALFIN1        --------->ALFIN1
-YAB1<---------DAG2                          ----------->GT1  <---------ALFIN1         <------------
 
aggtaacgcctttcggcttaaagaatgcagaagtaacttatcaacgcttggtgaaaaaatgttccacacacacctcaaaaagacaatggaggtgtacatg  10563300
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AGI:  At3g28295.1   
Description:  transposable element gene. gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
Range:  from: 10562817    to: 10563326    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.