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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                ----------->RAV1(2)
                                                --------->ZAT2
                                                <---------ZAT2
                                         ------>ZmHOX2a(2)                                 <--------
                                        <------ZmHOX2a(2)                            <---------GLK1(1)
      --------->LBD16                  ------->TEIL                              <---------WOX13(1)
      <---------LBD16                  --------->ARR14(2)                      --------->YAB1
  --------->ARR14(2)             <---------ATHB12                              <--------ATHB1
  ------->TEIL                  --------->ANAC58<---------At4g35610            --------->ATHB12
  <---------ARR14(2) ==========================HOX2a_HOX2a                    <---------ATHB12
---------YAB1        ===========================HOX2a_HOX2a                   --------->ICU4  <-----
------>YAB1          <------ZmHOX2a(1) <---------ARR14(2)               <---------ANAC46   ---------
-------ICU4   --------->DAG2    --------->ANAC58--------->At4g35610     <---------ANAC58  <---------YAB1
----->ICU4   --------->DAG2     ------>MYB46(1)<-----------RAV1(1)      <---------ANAC58--------->YAB1
--->YAB1    ---------->DOF2     ------>MYB83 <---------At4g35610    <----------DOF2  --------->GLK1(1)
 
tcatgaatccgagggaaaagggaaggagtagaaccaagcatggatcccatctgctgggcagtttgccattcctttgcgtcaatgatggatttcataataa  9900200
                                           --------->At4g35610
                                        <---------ANAC58
                                        <---------ANAC58
                                        <---------ANAC46
                                     <---------WOX13(1)
                                    <---------ANAC58
 ------>ZmHOX2a(1)                  <---------ANAC58
 <---------------AGL15        <---------ALFIN1
 --------------->AGL15     --------->ANAC46<---------At4g35610
-ICU4            <---------ZAT6    --------->ATHB12                                              ---
------GT1     <-----------------------TaNAC69(2)                                          ------>ZmHOX2a(1)
>YAB1     ---------->DOF2 --------->MYB46(3)                                             --------->TOE2(3)
 
cttcctgcttagagaaagaagtgatagcaaacaccacttgattgcgagcagtccataagttccatcaaatccaagggtatagaggtctccatcctaaacc  9900300
                                                            --------->ANAC58
                                                            <------MYB83
                                                            --------->ANAC58                     ---
                                                            <------MYB46(1)                      <--
                                                           --------->MYB46(2)                    <--
 <------ZmHOX2a(1)                       <----------DOF2   --------->MYB59 --------->ZAT14      <---
------>LBD16                    ---------->DOF2           <--------P   --------->GLK1(2) ---------->DOF2
 
cgtaggagggagacattgtctcttcttcacaagagcaaagccttcttttgtattagagagggtaggcaattgacattctatactctctgagcaaaagggc  9900400
                                                                             --------->At4g35610
                                                                       ---------->DOF2
                                                                    <---------HSFB2a(2)
                                                 <---------HSFB2a(1)--------->LBD16
                                                 --------->HSFB2a(1)--------->HSFB2a(2)
                                          <-------TEIL             <---------ANAC46
                                          <---------ZAT14          <---------LBD16
        --------->CCA1(2)                 --------->ZAT18          <---------HSFB2a(2)
------>At4g35610                          --------->At4g35610      --------->HSFB2a(2)
-----GAMYB                               --------->ALFIN1         <---------LBD16                  <
-------At4g35610  <---------MYB46(3)   <---------ANAC46       --------->HSFB2a(1)           <------ZmHOX2a(1)
------MYB46(3)   <---------AtMYB61    <---------MYB46(3)      <---------HSFB2a(1)      ----------->RAV1(1)
 
agttgaataagatgtgagtgatggtttcaaagtctctgcatcgggtgcagaaaggttctatagaaatgttccgggaaagcagttgagccccaacaggaag  9900500
                                                           <---------ARR11(3)
               <---------------AGL15                      --------->RVE1(1)
              ----------------->AGL3                    ------>MYB83
              ----------------->AGL1                    ------>MYB46(1)
           <----------DOF2                            <---------MYB59
       <---------ZAT18                    <---------GLK1(2)--------->ARR11(3)
 -------->ATHB1--------------->AGL15      --------->ARR11(3)
 --------->ATHB51                         <---------ARR11(3)                                     ---
 --------->ATHB12      <------ZmHOX2a(1)  --------->ARR14(2)                      --------->At4g35610
<---------YAB1<-----------------AGL2      <---------ARR14(2)                      <---------At4g35610
--------->ICU4----------------->AG      ----------->ARR10 --------->CCA1(1)   <-----------HVH21  <--
----------DOF2<-----------------AGL1<---------LBD16<------ZmHOX2a(1)     <---------MYB46(3)      <--
 
agcattattgagcgctttccaaatgaggagtttgatttttggggagattttcaaggaccaaatatctccaatccagttgttcgtcatatgagggactgga  9900600
                                                                         ------>MYB83
                                                                         ------>MYB46(1)
                                                                       <---------MYB59
                                                                    <---------ARR14(2)
                                                             <---------At4g35610
                                                        ----------->RAV1(2)
                          <---------YAB1      <---------ZAT14--------->At4g35610      --------->ANAC58
        <----------DOF2 --------->O2         <---------ANAC46<---------ZAT2       <-----------HVH21
------>HSFB2a(1) <---------ANAC58            <---------REM1(1)     <------ZmHOX2a(1)  --------->ANAC58
-------HSFC1(2)  <---------ANAC58          <---------ANAC46  --------->ZAT2 <----------DOF2
-------HSFB2a(1)--------->MYB52(2)  <---------GLK1(2)   --------->At4g35610 <---------DAG2
 
gggttctatcgcattatgttccttgccacatgatagcccgattttgtggtgtagagaccatctgagctgaggaaccaaacttttttgtcaaggcataagt  9900700
                ----------->GT1
              <---------ANAC58
       <----------DOF2
      <---------ANAC58
      <---------ANAC58                       --------->ATHB51
 <---------ANAC58          <----------DOF2   --------->AHL20(2)
 <---------ANAC58 <---------ZAT6   <----------DOF2                                <---------HSFB2a(2)
<---------At4g35610       --------->TOE2(3) --------->ICU4                        --------->HSFB2a(2)
<---------ZAT2<---------ANAC58  --------------->AGL15                <---------YAB1    xxxxxxxxxxxxx
 
gtttgctgggcttgatggctagtgatatacctttactgattttaggcattatttaggcatttgtttttgagtatttttgttatttctagagtcgtttcta  9900800
                                                           <------NtERF2
                                                           ------------>CBF
                                                          ------>NtERF2
                                                         <---------ATERF1(2)
                                                         --------->ATERF1(2)
                                                        --------->RAP2.6(3)
                                                   --------->ARR14(2)
                                                   <---------ARR11(3)
                                                   --------->ARR11(3)
                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                              ------------>CBF
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                                     --------->ICU4<---------ARR14(2)
                                     --------->GLK1(2) --------->MYB52(1)
                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                            ------->TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               xxxx
                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              -----
                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  ------
                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->HVH21                       ------
                 ------->MYC3 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <-----
            <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ANAC58       <-----
<----------DOF2  <-------MYC3 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58       ------
xxxxxxxxxx>smallRNA(si3)  <-------TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <----------DOF2<-----
 
ttccttttcatgtttttacacgttttagatgcatttggagattatggacaccaatatctgacggcaattcgatttcgagtctctttgaagttttaaagat  9900900
          <---------HSFB2a(2)
          --------->HSFB2a(2)
        ----------->RAV1(1)
  <---------ARR14(2)
  --------->KAN4(2)
  --------->ARR14(2)                            --------->HSFB2a(2)
 <----------TaMYB80     <-------TEIL            <---------HSFB2a(2)
 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->HSFC1(1)
xxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------HSFC1(1)                              ----
---->CCA1(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->LBD16
--->ARR11(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------LBD16
--->ARR11(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------ARR14(2)
----ARR14(2)    <----------DOF2    --------->GLK1(2)                              --------->ARR14(2)
----ARR11(3) <---------ARR11(3)    --------->ICU4                                --------->GLK1(1)
--->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <---------GLK1(1)
----GLK1(2)--------->LBD16------->TEIL      --------->GLK1(1)           <---------ANAC46        <---
 
ttgcatattcgccccagaactttgggatgcatttggagattatggagaattctagaagaaaacatagaacttatgctgtagaagaaatccggagaccaaa  9901000
                                                            <---------AHL20(1)
                                                            --------->AHL20(1)
                                                            <---------AHL20(2)
                                                            --------->AHL20(2)
                                                           <---------AHL20(2)
                                                           --------->AHL20(2)
                                                        --------->WOX13(1)
                                                      <------NtERF2
                             <---------ZAT6   --------->ARR11(3)
                             <-----------RAV1(1)    --------->ATERF1(2)
                      ------>MYB83            --------->ARR14(2)
                     --------->ABI4(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                    --------->AtMYB61     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
                    --------->DEAR3(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <
                    <---------ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                       --
                   --------->MYB46(3)   ------>NtERF2------>NtERF2                               ---
                  ------>NtERF2     --------->ANAC46<---------ATERF1(2)                          <--
           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->HVH21                               <--
          --------->ETT(2)--------->STY1(1)   <---------ARR11(3)  <---------ANAC58               ---
         <------NtERF2------>MYB46(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             --------->ARR11(3)
       --------->ALFIN1   <---------STY1(1)   <---------ARR14(2)  <---------ANAC58       <---------ARR11(3)
----->ARR14(2)   --------->ANAC46 <---------ANAC58 --------->RAP2.6(3)                   <---------ARR14(2)
------ARR14(2)<---------ETT(2)    <---------ANAC58--------->MYB52(1)                     --------->ARR14(2)
 
attcgcataggtgtcgatcgacaccacccctagtgttgctcgacaccaatatctgacggcaattaaatttcgagtctcttcgaagttttgaagatttgta  9901100
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AGI:  At3g26855.1   
Description:  similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT2G02650.1); similar to contains similarity to reverse trancriptase , related [Medicago truncatula] (GB:ABN07997.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706)
Range:  from: 9899917    to: 9900587    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.