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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
------>
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR14(3)
<---------
GLK1(2)
--------->
ARR11(3)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR14(2)
<---------
ARR14(3)
----------->
ARR10
--------->
ATERF1(1)
--------->
ARR14(2)
<------
NtERF2
<---------
ARR14(2)
----------->
RAV1(1)
<---------
ATHB12
------>
NtERF2
---------->
DOF2
--------->
ARR11(3)
--------->
ANAC46
------>
DOF2
------>
ZmHOX2a(1)
<---------
HSFB2a(2)
<---------
GLK1(2)
--------->
ANAC58
---->
RAV1(1)
<----------
DOF2
--------->
MYB46(3)
--------->
ANAC58
-
->
ANAC46
<------
ZmHOX2a(2)
--------->
HSFB2a(2)
<---------
At4g35610
<-----------
GT1
--
aaaggcgccagatcctgaaacaattctctttt
ctacaaaagaaaccactaattcagatactgaaccaagttcccaaattcacatactcaacacaatttga
7273600
<---------------------
WRI1
----------->
HVH21
--------->
WRKY45
--------->
WRKY38(1)
--------->
DOF5.7(2)
--------->
TOE2(3)
<-------
GAMYB
<----------
DOF2
<---------
MYB46(3)
<---------
ARR11(3)
<---------
STY1(1)
--------->
ARR11(3)
--------->
TOE1(3)
<-----------
RAV1(2)
-------->
DAG2
--------->
ZAT6
<---------
DOF5.7(2)
--------->
ZAT18
-
-------->
DOF2
<-----------
GT1
--------->
WRKY12
--------->
MYB52(1)
>>>>>>>>>
TBF1
gaaaagttctcaactttagcaaatttcaagagtaaccctagcgctcgttgacgaatcagacaaaaaaaacgactgcccagatggaagaaatgaagaagaa
7273700
--------->
At4g35610
------>
MYB83
--------->
HSFB2a(2)
<------
ZmHOX2a(2)
--------->
At4g35610
<---------
HSFB2a(2)
XXXXXXXXXXXXXXXXXXXX>
MIR832-5P
<---------
HSFB2a(1)
<---------
ANAC46
------>
MYB46(1)
--------->
TOE2(2)
<---------
At4g35610
--------->
ZAT2
--------->
TOE2(3)
--------->
At4g35610
<---------
ZAT2
<---------
YAB1
---------->
DOF2
<------
ZmHOX2a(1)
--------->
MYB46(3)
-------->
TOE1(2)
--------->
TOE1(2)
==================
HOX2a_HOX2a
<---------
At4g35610
aacatgagagattataagaaaac
cttggaaagctcgagaagagcattttctctgagttcaggattgctgagatcgagtaccaactgttcagcagaggcca
7273800
<---------
At4g35610
<---------
GLK1(1)
--------->
At4g35610
--------->
GLK1(1)
<---------
ZAT2
--------->
ZAT2
<------
NtERF2
<---------
ZAT18
--------->
LBD16
--------->
ZAT18
-------
<------
NtERF2
--------->
ARR11(3)
--------->
ALFIN1
-------
<---------
DEAR3(1)
<---------
AtMYB61
<---------
ANAC58
<-------
TEIL
<---------
LBD16
<------
ZmHOX2a(1)
<---------
ALFIN1
---------
<-----------
RAV1(1)
<------
MYB83
<---------
DEAR3(1)
<---------
ANAC58
<---------
ARR14(2)
<----------
DOF2
<------
MYB46(1)
--------->
AtMYB61
<---------
GLK1(2)
------>
ZmHOX2a(2)
<--------
P
--------->
ALFIN1
---------->
DOF2
--------->
ARR11(1)
===============================
HOX2a_HOX2a
--------->
MYB46(3)
--------->
ARR14(2)
<------
ZmHOX2a(2)
<---------
MYB52(1)
--------->
ALFIN1
--------->
DAG2
----------->
ARR10
================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<-------
TEIL
--------->
ARR11(3)
--------->
LBD16
--------->
LBD16
--------->
MYB52(1)
<--------
P
<---------
ARR11(3)
<---------
LBD16
<---------
LBD16
<---------
ABI4(2)
----------->
GT1
aattgcgatctttgttggccggagctccggtaggattttgtgcggaggtgctaggaccaccgaaaggtgtgcccatggagagagaagaaggtagattcgc
7273900
*
TSS
<-----------
GT1
--------->
MYB52(2)
--------->
ARR14(1)
<<<<<<<<<
MYB2
<---------
GLK1(2)
<--
<--------
P
<---------
TOE1(2)
--------->
ARR11(1)
---------
--------->
LBD16
<---------
MYB52(1)
--------->
ARR14(2)
---------
-->
ANAC58
<------
MYB83
<---------
MYB46(3)
<---------
ARR14(2)
--------->
ARR14(2)
-->
ANAC58
<------
MYB46(1)
<----------
DOF2
--------->
ARR14(2)
<---------
ARR14(2)
>
ARR14(1)
<---------
AtMYB61
<---------
MYB46(3)
<---------
TOE2(3)
<----------
DOF2
---------
cat
tctccagagttggttttctcgtttgtttgttaatgggacttttcaaggat
tcggtttctcccttcttctctcttctttatagatggcgattacgccc
7274000
<---------
AtLEC2
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
TOE2(3)
<-----------
GT1
--------
DOF2
<---------
AHL20(2)
<---------
YAB1
>
ANAC58
--------->
AHL20(2)
--------->
YAB1
<-----
>
ANAC58
<---------
AHL20(2)
<---------
ICU4
<------
>
ANAC46
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ATHB12
<---------
MYB52(1)
ctttcttccttatttatttattttcatgtcaaaacaaaaaaaaatgtttagtttcaaaatagttttaatcatcactatttacgacttaaaccgtttttta
7274100
--------->
YAB1
<---------
YAB1
--------->
AHL20(1)
<---------
WOX13(1)
<---------
TOE2(3)
--------->
AHL20(2)
----------->
GT1
--------->
ZAT18
--------->
AHL20(2)
----------->
GT1
<---------
ZAT6
<---------
ZAT18
--------->
YAB1
<---------
ZAT6
--------->
DAG2
<---------------
AtSPL8
----
AHL20(2)
<---------
AHL20(2)
<-------
MYC3
---------->
DOF2
--------------->
AtSPL8
---
AHL20(2)
--------->
YAB1
------->
MYC3
--------->
AHL20(2)
--------->
ATHB12
----------->
GT1
tttgttattcataaattataatatgtagtgatgcatatggtaaacaaataaacaaaaagtagtgttaattggtttgtgtacaaaattaagttataagtta
7274200
--------->
ANAC58
<-------
--------->
ANAC46
-------->
ATHB1
<---------
YAB1
<---------
TOE2(3)
-------
--------->
AHL20(2)
<---------
YAB1
<---------
ICU4
<---------
AHL20(2)
<---------
ARR11(3)
--------->
YAB1
<---------
GLK1(1)
--------->
ANAC58
--------->
ARR11(3)
--------->
ATHB12
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
YAB1
<---------
YAB1
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
<---------
ICU4
--------->
ICU4
------->
TEIL
<---------
ATHB12
--------->
ANAC46
--------->
AHL20(2)
<---------
ATHB12
<---------
YAB1
--------->
GLK1(1)
--------->
ANAC58
--------->
YAB1
<---------
AHL20(2)
aacaacatgaatgtgaacggaaatcaatttatcaaagcaatggcacataagcaagaaatagttctctaataatatcattaagttttttaatcattgatgt
7274300
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
TOE2(2)
<---------
AHL20(1)
--------->
TOE1(2)
<---------
AHL20(1)
<---------
ANAC55(2)
--------->
AHL20(1)
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC46
--------->
ARR11(3)
--------->
RVE1(1)
<---------
ARR11(3)
<---------
WRKY18(1)
--------->
ANAC58
--
TOE2(3)
--------->
AHL20(2)
--------->
WRKY38(1)
----------->
GT1
---->
GT1
----------->
RAV1(1)
--------->
AHL20(2)
------->
TEIL
--------->
AtMYB61
--------->
ZAT6
aaaatatcacatatgagtccaacataagaaaatatttttaaaaaaaattgttgactgaacgaatttagacggaccaaaacgtaagaactcgaacactaaa
7274400
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<
<---------
ANAC58
<----
<---------
ANAC58
<----
<---------
ANAC46
--------->
HSFC1(2)
--------->
AHL20(2)
-----
--------->
CCA1(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-----
<---------
ARR14(2)
--------->
HSFB2a(1)
---------->
DOF2
----------
--------->
ARR14(2)
<---------
HSFC1(2)
<---------
AHL20(2)
---------->
DOF2
-----
<---------
AHL20(2)
--------->
MYB46(3)
--------->
AHL20(2)
<----------
DOF2
---------->
DOF2
--------->
AHL20(2)
<------------
AtMYB77
--------->
YAB1
---------->
DOF2
--------->
DAG2
<----
tgagatttaaattttcaagataggcgtaaatgtaaccgatgcttctgaaacaaataataaaagagttagaaagctttataagaaaagtacaagcggaaaa
7274500
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AGI:
At3g20800.1
Description:
rcd1-like cell differentiation protein, putative. similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT5G12980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38914.1); contains InterPro domain Cell differentiation proteins, Rcd1-like (InterPro:IPR007216)
Range:
from: 7271143
to: 7273953
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.