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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                     --------->ATHB12
                                                                                     --------->ATHB51
                                                                                     --------->AHL20(2)
                                             --------->AHL20(2)                      <---------AHL20(2)
                                        <---------AHL20(2)                          <---------AHL20(2)
                     --------->ANAC58   --------->AHL20(2)                       <---------YAB1
          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->AHL20(2)
       ----------->GT1                  <---------AHL20(1)                      <---------AHL20(2)
     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2)             --------------->AGL15
     ---------->DOF2 --------->ANAC58   --------->AHL20(1)           <---------AHL20(2)
     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->AHL20(2)      --------->AHL20(2)
->ZmHOX2a(1)   --------->AHL20(2)    --------->AHL20(2)          --------->YAB1--------->YAB1  -----
--->TOE2(3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <-----------GT1   ========================
 
aaaaatgcgaaagtaaaataaaacaggctatgctaaattttaaaatattaaattcaacatttttctattcataaaatttctattaaaattatttgtagat  6336300
                          --------------->AGL15                             <---------ARR11(3)
                          <---------------AGL15                            <---------CCA1(2)
                         <-----------------AGL3             <---------AHL20(2)
                        ------>ZmHOX2a(1)                  --------->AHL20(1)
                  <---------ICU4                           --------->AHL20(2)            --------->GLK1(2)
                 <---------YAB1                            <---------AHL20(1)     ----------->GT1
                --------->TOE2(3)                          <---------AHL20(2)    <---------TOE2(3)
               <---------ICU4     <------ZmHOX2a(1)   --------->AHL20(2)  --------->ARR11(3)
               --------->YAB1   <---------TOE2(3)  <----------DOF2        <---------ARR11(3)
---->CCA1(2)  <---------ATHB12  --------->ANAC46   --------->TOE1(3)      --------->AHL20(1)
==========================================MADS_MADS--------->TOE2(3)      <---------AHL20(1)
 
aagagataatatgttcaaacattattcctctatataaggaatcaaacttgcaaactttaaaataaaattttgaaaaatatatctaatgtaatattctggt  6336400
                                                                                                 ---
                                                                                             <------
                 --------->ANAC55(2)                                                         -------
                 <---------ANAC55(2)                                                         <------
       ----------->GT1                                                               ----------->GT1
      --------->DAG2                                                               --------->MYB46(3)
     ---------->DOF2  --------->ZAT6     ---------->DOF2  --------->AHL20(2)      -------->P -------
<---------YAB1 <-----------GT1      ---------->DOF2 ----------->GT1          <-----------GT1--------
 
tttattagtaaagtaatattacttaatactaacaaattacaaagaaaagaactgaaggaaaaaaaataaacttttaaaattttctaaccagtgaaataaa  6336500
                                --------->YAB1
                             -------->HAHB4
                             --------->YAB1
                            <---------YAB1
                          --------->YAB1
        --------->TOE2(3)<---------AHL20(2)
    <---------AHL20(2)   --------->AHL20(2)                                             <---------AHL20(2)
------>YAB1          --------->AHL20(2)                                                <---------AHL20(2)
---AHL20(1)          <---------AHL20(2)                                                <---------AHL20(1)
-->AHL20(2)      --------->AHL20(1)                                                    --------->AHL20(1)
---AHL20(2)      --------->AHL20(2)                                          --------->YAB1
-->AHL20(1)      <---------AHL20(2)                                     --------->ZAT18--------->AHL20(2)
->AHL20(2)      --------->AHL20(2) --------->YAB1                 ----------->ARR10  ------->TEIL
 
ttagaatttaaacttaaaattttattaattaataatagtcataacaaaatttgacaaatgttttcaacttagatgtgcaataaacatgaatttattctac  6336600
                                                                  <---------ANAC58
                                                   --------->ARR11(3)
                                  >>>>>>>>>>>>>>>>>LFY            --------->ANAC55(2)
                          --------->ANAC58         <---------ARR11(3)
                          --------->ANAC58        <---------CCA1(2)                            -----
                        <------NtERF2       --------->KAN4(2)     <---------ANAC58      <------ZmHOX2a(2)
 <---------ICU4<---------YAB1     <<<<<<<<<<<<<<<<<LFY<----------DOF2                 <------ZmHOX2a(1)
<---------ATHB12      <---------ANAC46  <---------MYB46(3)    <---------DAG2        <---------TOE2(3)
 
taaatcaatactgggcctatgaatggcgcaaggaatagcccattggttattctatatcttttggaccttacgtttttgaagcctgtttaggatcacactc  6336700
                                                                             ----------->GT1
                                                                       ------>ZmHOX2a(2)
                                                                      <------ZmHOX2a(2)
                                                                  ------>ZmHOX2a(2)
                                                                 --------->CCA1(2)
                                                                 <------ZmHOX2a(2)
                                                                --------->ARR11(3)
                                                                --------->ARR11(1)
                                                                <---------ARR14(2)
                                                                --------->ARR14(2)
                                                                <---------ARR11(3)
                   <-----------GT1                             <---------GLK1(1)
                <---------ICU4                              <---------At4g35610
             --------->YAB1                      ------->TEIL  <---------HSFB2a(1)
        <---------AHL20(2)                       <---------ARR14(2)  --------->ARR14(2)
        --------->AHL20(2)               *TSS<---------TOE2(3)----------->ARR10   --------->ICU4
    --------->AHL20(2)        --------->AtMYB61  --------->ARR14(2)  <---------ARR14(2)
---->YAB1--------->AHL20(2)  --------->MYB46(3) <---------CCA1(2)--------->ARR14(1)                -
 
ataacaaaaaaataaataagaattacgcttctaccaccattaaactctaatgtatctgaactcagaagatccgatcggagtagtaaaaattcaacaaaac  6336800
                                                      <---------GLK1(2)
                             --------->ARR14(2)     --------->LBD16
                             <---------ARR14(2)     --------->ANAC46
                             <---------GLK1(2)     --------->HSFB2a(2)         <---------ANAC46
              --------->AHL20(2)         <---------GLK1(1)--------------------->WRI1     <---------LBD16
  --------->YAB1          <---------TOE1(2) <-----------GT1                    <---------ANAC58
-------->YAB1 <---------AHL20(2)     >>>>>>>>>TBF1 <---------HSFB2a(2)         <---------ANAC58 ----
 
aacaataagaaaactcattaattcattcgtcggattcgaagaagaaatcacttcccagaaactttcttcgtatcgaagtattgcttgtgttcttcggaga  6336900
              --------->ARR14(2)
          ------>ZmHOX2a(2)                                                       <<<<<<<<<TBF1
         <------ZmHOX2a(2)                     ==========================HOX2a_HOX2a
        --------->ARR14(2)                     ================================HOX2a_HOX2a
        <---------ARR14(2)                     ====================================HOX2a_HOX2a
    ------>ZmHOX2a(2)                          ------>ZmHOX2a(2)            ------>ZmHOX2a(1)
    <---------LBD16                          <---------ARR14(2)         ------>ZmHOX2a(1)
   <------ZmHOX2a(2)            <---------ARR14(2)    ----------->GT1------>ZmHOX2a(1)
  --------->ARR14(2)         <---------TOE2(3) =============================HOX2a_HOX2a       ------
  <---------ARR14(2)  <---------ZAT14        --------->ARR14(2)     <---------ALFIN1    <<<<<<<<<TBF1
----->CCA1(2) <---------ARR14(2)--------->ARR14(2)---------->DOF2 ------>ZmHOX2a(1)  <<<<<<<<<TBF1
 
aacgagatcgggatccgaatacgagtacaatggaggtttcgcaagatggatcggaaagagataaaactcctcctccttcctcttcttcttcttcttcctc  6337000
                     --------->HSFC1(1)
                     <---------HSFB2a(2)
                     --------->HSFB2a(2)
                     <---------HSFC1(1)
         <-----------TGA1
         <-----------HVH21
        --------->TGA2(1)
        --------->ETT(2)
        <---------ETT(2)                                                                <------ZmHOX2a(1)
        <---------TGA2(1) --------->DAG2                                              <---------TOE2(3)
        <---------bZIP60(1)                                                       <---------ZAT2
        --------->bZIP60(1)    --------->MYB52(2)                                 --------->ZAT2
     ------>ZmHOX2a(1)  ---------->DOF2          --------->STY1(2)                <---------At4g35610
>ZmHOX2a(1)         <---------LBD16    <---------GLK1(2)                          --------->At4g35610
 
tcccattcctgtcgtcaccaatttctggaaaggtttgtttcagattatgtctagctatctattcgttttcttcgactcgtagtgaagctgaggatgagct  6337100
                                  <---------ANAC58
                                  <---------ANAC46
                                  <---------ANAC58
                              <---------ARR14(2)
                              --------->ARR14(2)
                             <------ZmHOX2a(1)                              <---------LBD16
                         <<<<<<<<<MYB98                                     <---------HSFB2a(2)
                       <---------MYB46(3)                               --------->KAN4(2)
                       --------->MYB52(2)                              <---------KAN4(1) <---------AtMYB61
                     <---------MYB52(1)                     --------->GLK1(2)--------->LBD16
                  <-------TEIL<---------GLK1(1)            <---------GLK1(2)--------->HSFB2a(2)    <
           <------ZmHOX2a(1)<---------YAB1               ----------->ARR10 <---------LBD16  <-------
 
tgtttttgtagttaggagaaattcgtttgttaggattccgtttaagtagtaagacttaatgagattctcactgaatgttcggggagattgcattggtagt  6337200
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AGI:  At3g18480.1   
Description:  CCAAT displacement protein-related / CDP-related. Identical to Protein CASP (CASP) [Arabidopsis Thaliana] (GB:Q9LS42;GB:Q93ZW7); similar to ZWI (ZWICHEL), calmodulin binding / microtubule motor [Arabidopsis thaliana] (TAIR:AT5G65930.2); similar to ZWI (ZWICHEL), calmodulin binding / microtubule motor [Arabidopsis thaliana] (TAIR:AT5G65930.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98508.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68029.1); similar to CASP C terminal, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95655.1); contains InterPro domain CASP, C-terminal; (InterPro:I
Range:  from: 6336742    to: 6341794    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.