Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ANAC55(2)                                                              --------->ANAC58                                                              --------->ANAC58                                                              --------->ANAC46                                                             <---------LBD16                                                          --------->ANAC58                                                          --------->ANAC58                                                      <-----------HVH21                                                    ------->MYC2                                                    <-------MYC4                                                    ------->MYC4                                                    ------->PIF5                                                    <-------MYC2                                                    <-------MYC3                                                    <-------PIF5                                                    ------->MYC3                                                   --------->ANAC46                                                   --------->O2                                                   <---------TGA1a                                                   --------->TGA1a                                                   <---------O2                     --------->ARR14(2)            --------->ANAC55(2)                              - ------>DOF2        <---------ARR14(2)           <---------ALFIN1                      --------->At5g28300 --->TOE2(3)        <---------GLK1(2)   <----------DOF2  --------->WOX13(1)           ----------->GT1 --->TOE1(3)        --------->ARR14(2)  =====================bZIP_DOF  --------->REM1(1)          <--   aaagcccaaaatatggagggccgattcttcatcttctcacttctttttcttccacgtgtcaagcacggaaactacatccaatctcagaccgtaaaactaa  5208600                                                                                         <---------ZAT6                          --------->LBD16                                          --------->DAG2                      <---------ARR14(2)                                          ---------->DOF2                   <------NtERF2                                              --------->ANAC58     <---------ARR14(2)  ----------->GT1                    <---------AHL20(2)------>MYB46(1)     --------->ARR14(2) <---------LBD16                    <---------AHL20(2) --------->ANAC58     --------->ARR11(3)--------->MYB52(1)           <-----------GT1<XXXXXXXXXXXXXXXXXXXXMIR778    <------ZmHOX2a(1) --------->ARR14(2)    <-----------GT1<---------AHL20(1) --------->AtLEC2  <---- -------->LBD16   --------->LBD16         <---------MYB52(2)--------->AHL20(2)------>MYB83  <-------- -------LBD16   <---------LBD16      --------->AtLEC2      --------->AHL20(2) --------->ANAC46  -----   accggaggattttgtgaagccggagaaccggaaatagttatgcaaataaccaagttaccaatttaatttgaacataaaccaagcaaaagtagtggtgaag  5208700                                                        ------>NtERF2                                                      <------NtERF2                                                     <---------ATERF1(1)                                    <---------------AtSPL8       --------->ANAC58                                    --------------->AtSPL8       --------->ANAC58                              ---------->DOF2        ------>NtERF2  --------->TOE2(3)               -                              --------->AHL20(2)    --------->RAP2.3(3)                             -                        --------->ANAC58            ----------->HVH21                           <----                        --------->ANAC58           --------->RAP2.3(1)       --------->GLK1(2)  ----- -----At4g35610       ---------->DOF2              --------->DEAR3(2)       --------->ARR11(3)  ----- -REM1(1)          <---------At4g35610            --------->At4g35610       <---------GLK1(2)  <----- ---->At4g35610    --------->At4g35610  <-------TEIL--------->DEAR3(1)  ---------->DOF2      <------ZmHOX2a(1)   cagaaaacacataaaactctcagctaaagcaataaaacagagtacattcaagagccgacgactaagtaagcctcaaaagattctgcaaacagagaggaac  5208800                                                                        <-----------GT1                                                                     <----------DOF2                                                                 --------->ANAC55(2)                                     <-----------GT1             --------->ANAC58                                <---------AHL20(2)               --------->ANAC58       ---------->DOF2     <---------ARR14(2)                    --------->ANAC46     --------->ANAC58      <---------AHL20(1)                    ===============bZIP_DOF     --------->ANAC58      --------->AHL20(1)                    --------->ANAC55(1)     --------->ANAC46      --------->ARR14(3)                    ====================================    ------>NtERF2          --------->ARR14(2)                    --------->O2                     <-- ------>GAMYB              <---------ARR11(3)                    <---------O2                  ------ -------->ANAC46           --------->ARR11(3)                    ==================================== -----HSFB2a(1)            <---------ARR14(3)                    <---------TGA1a               <----- ---->KAN4(1)            --------->ANAC58                        --------->TGA1a            --------- ---->MYB46(3)           ----------->ARR10                  ------>ZmHOX2a(1)              ---------- ----KAN4(2)             --------->ANAC58       <-----------GT1<---------ALFIN1        <---------AHL20(2)   aatcgccacgaaagaagcttaagaggcaagatattgaattttcccctaattttctattcgtcctcacacgtctttcaccattctcttatataaaaaagtt  5208900                                                                       <------ZmHOX2a(2)                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                      <---------ARR11(3)                                                              --------->LBD16                                        --------->DAG2       <-----------RAV1(2) <---------MYB52(2)                                       ---------->DOF2      <-----------------AGL1  -------->P =bZIP_DOF                          ------->GAMYB        <----------DOF2       --------->ZAT6 --------DOF2                      --------->MYB46(3)   <---------ANAC58 --------->WOX13(1) --->ARR11(3)                     --------->ANAC58      <---------ANAC58------>ZmHOX2a(2) ========bZIP_DOF                 --------->ANAC58 <----------DOF2    --------->ARR11(3)            < ----ARR11(3)                <---------ZAT18      <---------DAG2 <--------P --------->YAB1          - >DAG2 <---------DAG2        --------->ZAT18    --------->ARR11(3)    --------->GLK1(2)        <<<<<< >DOF2 <----------DOF2    <---------ANAC46      <---------ARR11(3)   <------ZmHOX2a(1)   <----------DOF2   ctttttagactttttggtttcatttgtttagtgggcaaccaaaaagtcaagaccttttgctttccaggtaaggatctatcaccactaacctcttttcttc  5209000                                                                                                  <--                                                                                         <---------ANAC58         --------->TOE1(1)                                   <----------DOF2             <---------ANAC58    --------->ARR14(2)                                       <---------------AGL15      --------->ATHB12 ---------HSFB2a(2)        ------------>CBF                  <---------DAG2           <---------WOX13(1) -------->HSFB2a(2) <-----------GT1------->TEIL           ---------->ID1            --------->ATHB12 <<<TBF1------>ZmHOX2a(1)  *TSS    <---------TOE1(2)     <-----------GT1           <---------YAB1 ---   ttctcgattcctcgttccctattttcgatttcaattgtacgtttttcaatcgaaagttttctcctttttgagggatttgtttagtttgattgattgtgga  5209100                                              <---------WOX13(1)                                      <-----------RAV1(2)  --------->At4g35610                                   --------->REM1(2)       <---------At4g35610                                <---------ANAC58           <------ZmHOX2a(2)          --------->ARR14(2)                                <---------ANAC46    <---------ANAC58      <---------ICU4                                <---------ANAC55(1) <---------ANAC58      --------->ATHB12                                <---------ANAC58 <---------GLK1(2)       <---------YAB1 ------>ZmHOX2a(2)                          <---------ARR14(2) >>>>>>>>>GATA-2             --------->ICU4<------ZmHOX2a(2)                          --------->ARR14(2) >>>>>>>>>GATA-3           --------->YAB1 <---------ARR11(3) -------KAN4(1)           --------->GLK1(2)  >>>>>>>>>GATA-4 ----------->HVH21        <---------ARR14(2) ------>KAN4(1)          <---------GLK1(2)   >>>>>>>>>GATA-1------>ZmHOX2a(2)         --------->ARR11(3)   ttgttctgttcttcgttgcagttcgaagaatctggcgtgttcaggtggattgattcttgcgatctgacccttctcatgattagtttccgatcttcgaata  5209200           --------->GLK1(2)          <---------ARR14(2)                                   <---------MYB55(2)          <---------GLK1(2)                                    --------->MYB46(3)          --------->ARR14(2)                             <-----------GT1    ------->GAMYB                            <---------ANAC58 ------>MYB46(1)  ------>MYB83                               <---------ANAC58 ------>MYB83  ------>MYB46(1)                  ------>ZmHOX2a(1) <----------DOF2  --------->ZAT2                <-----------GT1  <---------CCA1(2)  ------->MYC3 --------->MYB52(1)          <---------MYB52(1)<---------CCA1(2)    <-------MYC3   gaccaactgcgagattctcatctataactccgttttcctattcgatttcttatctctttctaccatccaacgtgttcttcatacattacttcaattgctc  5209300                                           ---------->DOF2                                   --------->ANAC58                              <---------ANAC46                       <------MYB46(1)                      ------>ZmHOX2a(1)  ------->GAMYB               <------MYB83                    ------>ZmHOX2a(2)  -------->P             <-------TEIL                  --------->ARR14(2)   --------->ANAC58    <---------ANAC58                  <---------ARR14(2)   --------->ANAC58    <---------ANAC58             <-----------ARR10<---------ANAC58          <---------MYB52(1)             --------->ARR14(2)    --------->ANAC58    ------>ZmHOX2a(1)                            =             --------->GLK1(2)<---------ANAC58         <----------DOF2    --------->ICU4            <             <---------ARR11(3)    --------->ANAC46 ---------->ID1  --------->MYB59               ---   tcgatttcgcctcaaaatctgatcctctagtagcttgaagcaacccaaagtctcgtcctttacgttcaattaggtcattttgaaaccctgttcttagaat  5209400                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              <---------HSFB2a(1)                                              --------->HSFB2a(1)                                             <---------ARR14(2)                                             --------->ARR14(2)                                             <---------ARR14(3)                                             <---------ARR11(3)                                             <-----------ARR10                                             --------->ARR11(3)                                             --------->GLK1(2)                                     <-                                             --------->ARR14(3)             <---------WRKY18(1)   <--                                            ===========================HOX2a_HOX2a               <---       --------->ANAC58                     <------ZmHOX2a(1)              --------->WRKY12    ------       ----------->ARR10            <---------ANAC58                       --------->WRKY38(1) <-----       --------->ANAC58             <---------ANAC58                    --------->ALFIN1       <----- ==========================HOX2a_HOX2a   --------->HSFB2a(2)    ------>ZmHOX2a(2) <---------HSFB2a(2) ------ZmHOX2a(1)   ===============================HOX2a_HOX2a--------->ARR11(3)  --------->HSFB2a(2) ------>MYB59       ------>ZmHOX2a(2)    <---------HSFB2a(2)  <---------ARR11(3) <---------LBD16<----   taggaagggaagaaatggctgatcgaaactgtttgatttcgttcgaggatcttccttctcatttgatcttggaggtgttgacctctgggaggcttagtgc  5209500  Previous    Next  AGI:  At3g15430.1    Description:  regulator of chromosome condensation (RCC1) family protein. similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G26100.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN60415.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39246.1); contains InterPro domain Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091) Range:  from: 5209027    to: 5211752    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.