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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
WRKY38(1)
<---------
WRKY12
<---------
MYB46(3)
<---------
AtMYB61
--------->
ALFIN1
--------->
ATERF1(1)
<------
NtERF2
<---------
ANAC46
<---------
DEAR3(1)
<---------
LBD16
<----------
DOF2
<------
NtERF2
----------->
HVH21
---------
TOE2(3)
--------->
ATERF1(1)
----------
GT1
<---------
ATERF1(1)
<
--------
DOF5.7(2)
<---------
RAP2.3(2)
<----
----->
DOF5.7(2)
<---------
DEAR3(1)
------
------
DOF2
<----------
DOF2
<---------
ORA47(2)
------
>
ZmHOX2a(2)
------>
NtERF2
<---------
RAP2.6(2)
<-----
->
ARR14(2)
<---------
ABI4(2)
<---------
ORA47(1)
<---------
LBD16
------
--
AGP1
<---------
YAB1
--------->
MYB46(3)
--------->
RAP2.6(3)
<-------
--
ARR14(2)
--------->
ANAC46
--------->
SPL7
--------->
ETT(2)
<-------
GAMYB
->
ARR11(3)
--------->
ANAC58
<---------
HSFB2a(2)
<---------
DEAR3(1)
--------->
ARR14(2)
--
ARR11(3)
--------->
ANAC58
<---------
TOE2(3)
<------
ZmHOX2a(1)
<---------
ARR14(2)
-
CCA1(2)
<---------
ANAC58
<---------
ARR11(3)
<---------
RAP2.3(1)
<---------
ARR14(2)
->
ARR10
<---------
ANAC58
<------
NtERF2
--------->
HSFB2a(2)
<---------
ETT(2)
--------->
ARR14(2)
ttaacgcttttgatttcgttctcaagaagccaccgagttctttaggtttctggacggcggaggagtggtcgacggatgatgttcgaatcggtttcggttg
4619900
--------->
LBD16
<---------
LBD16
<---------
ANAC46
<---------
ANAC58
<---------
DEAR3(1)
--------->
CCA1(2)
--------->
ARR11(1)
--------->
ARR11(3)
<---------
ARR11(3)
>>>>>>>>>
TBF1
<---------
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR854A-E
<---------
SPL7
---------------------
WRI1
--------->
ARR14(2)
<---------
At4g35610
--------->
ARR14(2)
---
GAMYB
<---------
HSFB2a(1)
------->
TEIL
<------
ZmHOX2a(1)
--->
MYB55(2)
----------->
ARR10
--------->
GLK1(2)
--------->
GLK1(2)
--->
MYB52(2)
--------->
At4g35610
<---------
ANAC58
--------->
ANAC58
<-----
----
MYB46(3)
---------->
DOF2
--------->
ATERF1(1)
--------->
ANAC58
--------->
At4g35610
--->
MYB111(2)
<------
ZmHOX2a(1)
<---------
ANAC58
<---------
LBD16
--------->
YAB1
--
MYB52(1)
<------
ZmHOX2a(1)
<---------
ANAC58
----------->
HVH21
<---------
ARR14(2)
--------->
ARR11(3)
ttgacgagaagaagaaggaggagaagcggaagatttggagcgtccgtggaatgaatctgactcggaagaggagaatccgcttgaatcagaagagctagag
4620000
<---------
HSFB2a(2)
--------->
HSFB2a(2)
----------->
HVH21
------>
ZmHOX2a(2)
<------
NtERF2
<<<<<<<<<
GATA-1
--------->
At5g28300
<<<<<<<<<
GATA-2
<---------
DEAR3(1)
<<<<<<<<<
GATA-4
<---------
ANAC46
<<<<<<<<<
GATA-3
<------
NtERF2
-------
<------
ZmHOX2a(2)
<---------
ABI4(1)
------>
ZmHOX2a(2)
<---------
GLK1(1)
<---------
RAP2.3(1)
<---------
ARR11(3)
<---------
ARR11(3)
<---------
DEAR3(1)
--------->
ARR14(2)
<---------
AGP1
<---------
DEAR3(1)
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
ARR11(3)
<---------
RAP2.3(2)
<---------
ARR14(2)
<---------
CCA1(2)
<---------
At4g35610
--------->
ARR11(3)
--------->
HSFB2a(2)
--------->
At4g35610
<---------
ARR14(3)
<---------
HSFB2a(2)
<------
NtERF2
<---------
MYB46(3)
<-----------
GT1
===============
HOX2a_HOX2a
<-------
GAMYB
======================
HOX2a_HOX2a
==============
HOX2a_HOX2a
<---------
MYB46(3)
=====================
HOX2a_HOX2a
------>
ZmHOX2a(1)
--------->
At4g35610
--------->
CCA1(2)
<------
ZmHOX2a(2)
----
ZAT6
---------->
DOF2
------>
ZmHOX2a(1)
<---------
At4g35610
<---------
WOX13(1)
--------->
ARR14(3)
ttggaatgtctgagaaagtctgtcttcctcctagatctctcgaaatcagcggcgattgagcggcggtgatagataggagagatttcacgatcttcgtgta
4620100
<---------
MYB46(3)
<------
MYB46(1)
<------
MYB46(1)
<------
MYB83
<------
MYB83
<---------
ARR14(2)
<---------
AtMYB61
<---------
MYB46(3)
--------->
ALFIN1
--------->
ARR14(2)
<---------
AtMYB61
<---------
ANAC46
--------->
ARR11(1)
<---------
ANAC58
--------->
ALFIN1
<---------
ARR14(2)
<---------
ANAC58
<------
ZmHOX2a(1)
----------->
ARR10
<---------
ANAC46
--------->
ARR14(2)
<------
ZmHOX2a(1)
<--------
P
<------
--------->
ANAC55(2)
<---------
ARR14(2)
--------->
ALFIN1
--------->
At5g28300
<---------
MYB52(1)
<---------
YAB1
<---------
WOX13(1)
--------->
ALFIN1
----------->
GT1
<---
-->
REM1(2)
<---------
MYB46(3)
<<<<<<<<<
TBF1
--------->
ALFIN1
<---------
HSFB2a(1)
--------->
MYB59
gagaagcgttacgttgttggtggtgatgcttcttcttcttgatggattcgaggggaggagggggggaggaatcgtcgatggagcggtagatttggtcgag
4620200
--
--------->
CCA1(2)
<---------------
AGL15
<-
<---------
ARR11(3)
--------------->
AGL15
---
--------->
ARR11(3)
----------------->
AGL1
<---
--------->
At4g35610
----------------->
AGL3
<------
ZmHOX2a(1)
---------->
DOF2
<---------
At4g35610
=====================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
MYB46(3)
============================
HOX2a_HOX2a
--
<---------
ANAC46
--------->
ALFIN1
<---------
TOE2(3)
------>
ZmHOX2a(2)
<------
ZmHOX2a(1)
--------->
ALFIN1
<---------
DEAR3(1)
<---------
ARR11(3)
--------->
ARR14(2)
---
HSFB2a(2)
<---------
AtMYB61
--------->
MYB59
--------->
ARR11(3)
<---------
ARR14(2)
---
ZmHOX2a(1)
<---------
At5g28300
<---------
TOE1(3)
--------->
GLK1(1)
<------
ZmHOX2a(1)
<--
gagagtggaggagaaagaagggttacggtggtgagatgaagatttaggtttctcccaagtgatctccat
tagagggaagaagaggaaatggaggaggaag
4620300
------->
MYC3
------->
MYC4
<-------
MYC4
------->
PIF5
<-------
MYC2
<-------
PIF5
------->
MYC2
<---------
ANAC55(2)
--------->
O2
<--------
ABF1
=================
bZIP_DOF
--------->
bZIP60(2)
<---------
O2
<---------
TGA1a
--------->
TGA1a
--------->
ANAC55(2)
<<<<<<<<<<
AtMYC2
<<<<<<<<<<
HY5
<<<<<<<<<<
ABI5
<------------
CBF
-------->
ATHB1
<---------
At4g35610
--------->
ATHB12
<---------
ZAT14
--------->
ANAC58
--------->
YAB1
--------->
At4g35610
--------->
ANAC46
<---------
ICU4
------->
GLK1(1)
<---------
ANAC46
<---------
YAB1
<---------
HSFB2a(2)
--------
GLK1(1)
----------->
GT1
<---------
ATHB12
--------->
HSFB2a(2)
------>
ARR14(2)
<-------
GAMYB
--------->
ANAC58
--------->
ICU4
<----------
DOF2
---
ZmHOX2a(1)
--------->
At4g35610
--------->
ALFIN1
----------------------->
TaNAC69(2)
------->
CCA1(2)
---------->
DOF2
<-----------
GT1
----------->
GT1
<-------
MYC3
-------
ARR14(2)
<------
ZmHOX2a(1)
=================================================
MYC_MYB
----
gatatgtgagagagagcagaggaagacagaaagagtgtgttgtttataacaaggcagacaagtggtaatcattgccacgtgtctttctcgacaactctct
4620400
--------->
At5g28300
<-----------
GT1
<---------
YAB1
<---------
At5g28300
<-----------
TBP
<-----------
GT1
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(1)
------>
MYB83
--------->
AHL20(1)
----------->
RAV1(1)
<---------
ATHB12
--------->
ARR11(3)
--------->
PCF2
--------->
WOX13(1)
<---------
ARR11(3)
--------->
SPL7
--------->
MYB46(3)
--------->
ARR11(3)
---------->
ARF1
--------->
AtMYB61
--------->
AHL20(1)
<-----------
HVH21
------------>
CBF
<---------
ARR11(3)
--------->
bZIP60(2)
--------->
MYB46(3)
<---------
AHL20(1)
<-------
TEIL
----
-->
NtERF2
--------->
ANAC46
------>
MYB46(1)
<----------
DOF2
----------->
GT1
<-------
TEIL
gcctcgtcccccacaaaactaaaccaccaatcatctttttaccctctcttttaaaaatatttttatactcatggtaaaaatacatatatacatgatcaaa
4620500
--------->
DAG2
---------->
DOF2
<------------
CBF
<---------
TOE2(3)
<---------
ARR14(2)
--------->
ATHB12
--------->
ANAC55(2)
<------
ZmHOX2a(2)
--------->
ATHB51
<---------
ANAC55(2)
--------->
ARR11(3)
<---------
YAB1
<---------
YAB1
--------->
ANAC58
<---------
ARR11(3)
<---------
TOE2(3)
--------->
ICU4
----------->
GT1
<------
ZmHOX2a(1)
--------->
MYB52(1)
----
----->
YAB1
<----------
DOF2
<----------
ARF1
----------->
GT1
--------->
ANAC58
---------->
DOF2
cagaactgatgtttctttcatgttattattgggagaaaagttgtttaaaatgtttataggattacggtatgcaagacgaatatcggaaagatcaaaaatc
4620600
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<----
<---------
AGP1
-----
--------->
AGP1
-----
--------->
ARR11(3)
<---------
GLK1(1)
------>
ZmHOX2a(2)
<---------
TOE2(3)
--------->
GLK1(1)
<---------
ARR11(3)
<---------
TOE2(3)
--------->
ATHB12
----------->
GT1
<---------
ARR11(3)
<---------
TOE1(3)
--------->
ICU4
<----
------>
DOF2
--------->
ARR11(3)
<---------
TOE2(3)
---------->
DOF2
<-----
aaagcttagtaaaatgatctaagatctatatgtatgaaaatggtaaggtttaagaattaagaattttgtcttgaaccaaaagaattatgggatatcactg
4620700
--------->
ANAC55(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
GLK1(2)
<---------
ANAC55(2)
--------->
ANAC58
<---------
TOE2(3)
-----
ZAT14
----------->
HVH21
---------->
DOF2
---->
ZAT14
--------->
ANAC55(2)
<-------
TEIL
---------->
DOF2
---->
ZAT2
<-----------
GT1
<---------
ATHB12
----------->
GT1
-----
ZAT2
--------->
At4g35610
--------->
ANAC58
--------->
DAG2
------
RAV1(1)
<----------
DOF2
--------->
ANAC46
---------->
DOF2
-
ctgggttacagaacagcttagactttattcacatgacacgacccaaagattcacttatatgtgttccctacttataaagtaaaagattaaagttgttcct
4620800
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AGI:
At3g13980.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69469.1)
Range:
from: 4619045
to: 4620269
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.