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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
--------->
ANAC58
<---------
AHL20(1)
<---------
AHL20(2)
----------->
RAV1(1)
--------->
ARR11(3)
--------->
ANAC46
<---------
ARR11(3)
<----
--------->
ANAC58
<---------
HSFB2a(2)
--------->
ANAC46
------
--------->
ANAC58
--------->
MYB52(1)
--------->
ANAC58
------
----->
YAB1
------>
MYB46(1)
<---------
GLK1(1)
<-----
-----
ATHB12
------>
MYB83
--------->
AHL20(1)
<-----
-->
WOX13(1)
------->
TEIL
<---------
MYB59
--------->
AHL20(2)
------->
TEIL
-------
-
ATHB12
<---------
ATHB12
<---------
YAB1
--------->
MYB46(3)
--------->
GLK1(1)
--------->
ANAC46
caaactcgccacaaatgaatcgatttgaatcaatatagaaacctaacaatcgagaaatatattgagaaacccgaaactgaatctaggcaatatcaaatat
4388100
<------
ZmHOX2a(2)
<---------
ARR11(3)
---------
<-------
TEIL
---------
<---------
ARR11(3)
==========================
HOX2a_HOX2a
--------->
ARR14(2)
<------
ZmHOX2a(2)
<--------
--------->
ARR11(3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
-----
CCA1(2)
<---------
ARR14(2)
--------->
ARR14(2)
==========
--->
ARR11(3)
<---------
ZAT14
--------->
CCA1(2)
<---------
HSFB2a(2)
<---------
HSFB2a(2)
===
--->
AHL20(1)
--------->
ZAT14
<------
ZmHOX2a(2)
--------->
HSFB2a(2)
--------->
HSFB2a(2)
--------
----
AHL20(1)
--------->
At4g35610
----------->
RAV1(1)
--------->
YAB1
---------->
DOF2
<--
----
ARR11(3)
--------->
ZAT2
--------->
AGP1
--------->
ARR11(3)
--------->
AGP1
---------->
DOF2
-->
AHL20(2)
<---------
At4g35610
--------->
MYB52(1)
--------->
GLK1(1)
--------->
YAB1
===
atctgaacaagactcaaaatcagctcactggattcaagatccaacagattcaagatcgagaaatcaaaacacagatcgagaaacataaagaaaggatac
g
4388200
--------->
HSFB2a(2)
<---------
HSFB2a(2)
------>
ZmHOX2a(1)
--------->
HSFC1(2)
------>
ZmHOX2a(2)
<---------
HSFC1(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(2)
--------->
ALFIN1
<---------
GLK1(2)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<-----------
RAV1(2)
----------->
ARR10
<---------
LBD16
--------->
At4g35610
<-------
TEIL
--------->
ARR11(1)
<---------
At4g35610
--------->
CCA1(2)
--------->
ARR11(3)
--------->
ZAT2
--------->
ARR11(1)
<---------
ARR14(2)
>
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
>
ARR11(1)
<---------
ARR14(2)
<---------
ARR11(3)
>>
-
ARR14(2)
<---------
GLK1(1)
--------->
CCA1(2)
--
====
HOX2a_HOX2a
<---------
HSFB2a(1)
----------->
ARR10
<---------------------
WRI1
===========
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
ARR14(2)
--------->
DAG2
-----
->
CCA1(2)
--------->
MYB52(1)
----------->
ARR10
--------->
ARR14(2)
---------->
DOF2
---------
----
ZmHOX2a(2)
------->
GAMYB
=====================================
HOX2a_HOX2a
---------->
DOF2
==============
HOX2a_HOX2a
====================================
HOX2a_HOX2a
--------->
AtMYB61
atcagcaggaggagcaacggtagccat
gagaggagattcgacaaacaaagatttggatagatccttctcggataaaaggggatgcgaccaaagagaaaga
4388300
===================
HOX2a_HOX2a
--------->
TOE2(3)
<---------------
AGL15
----------->
GT1
--------------->
AGL15
>>>>>>>>>
TBF1
----------------->
AGL2
>>>>>>>>>
TBF1
<-----------------
AGL1
<------
ZmHOX2a(2)
>>>>>>>
TBF1
--------->
CCA1(2)
<------
ZmHOX2a(1)
---------------------->
ANAC81
--------->
TOE1(3)
--------->
AGP1
------------------->
ANAC81
--------->
GLK1(1)
----------->
GT1
---
->
DOF2
---------->
DOF2
<-----------------
AGL3
<---------
ARR11(3)
--------
agaagaagaagaaaaaaaagaagatagagaaaccctaaatggaatcaggaaaaacccagatcaaatctagggtttaagagatagaatagaagagagaaag
4388400
<------
NtERF2
------>
NtERF2
<---------
RAP2.6(3)
--------->
RAP2.3(3)
--------->
RRTF1(3)
--------->
RRTF1(2)
--------->
DREB2C(2)
--------->
ATERF1(2)
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
RAP2.3(2)
------->
GAMYB
<---------
ATERF1(2)
--------->
ANAC46
--------->
MYB46(3)
--------->
RAP2.3(1)
--------->
ERF1
--------->
ATERF1(1)
--------->
RRTF1(1)
------>
NtERF2
--------->
At4g35610
<---------
At4g35610
<---------
ATERF1(1)
<---------
ZAT2
--------->
ZAT2
--------->
DEAR3(1)
<------
ZmHOX2a(1)
<------
NtERF2
----------->
GT1
--------->
ATERF1(1)
<----------
ID1
<-----------
RAV1(2)
----------->
GT1
--------->
RAP2.3(1)
--------->
LBD16
<---------
At4g35610
--------->
HSFB2a(2)
<------
NtERF2
<---------
LBD16
<---------
ATERF1(1)
<---------
LBD16
<
--------->
At4g35610
<---------
ANAC46
--
--------->
RAP2.6(2)
<---------
LBD16
<-
--------->
AHL20(2)
<---------
ANAC58
--------->
DAG2
--
-------->
GT1
--------->
ERF1
<------
ZmHOX2a(1)
<---------
HSFB2a(2)
---------->
ID1
<-
-->
DOF2
<---------
RAP2.6(2)
<---------
ANAC58
---------->
DOF2
--------->
AtMYB61
--
aagaaaaaaatggccgcagccgccaagaaggagaagggttttgcttcggggaagaggaaaaaaagggttttgtctctctacctctccctctgattcaaat
4388500
<---------
ALFIN1
--------->
AtMYB61
--------->
ANAC46
--------->
bZIP60(2)
<---------
ALFIN1
------->
GAMYB
--------->
MYB46(3)
<---------
MYB55(2)
<-----------
GT1
-------->
P
<---------
RVE1(1)
--------->
WOX13(1)
<---------
CCA1(1)
<-----------
GT1
<---------
AHL20(1)
<---------
ATHB12
<------------------------
ANAC81
<---------
ARR11(3)
------
ZmHOX2a(2)
<----------
DOF2
<------------------------
ANAC81
------->
ARR11(3)
<------------------------
ANAC81
--------->
ARR11(3)
--------
ARR11(3)
<------------------------
ANAC81
--------->
TOE1(3)
------->
ARR14(2)
<---------
DAG2
<----------
DOF2
<---------
DAG2
<----------
DOF2
--------
ARR14(2)
<---------
ALFIN1
<----------
DOF2
--------->
TOE2(3)
---------
------->
AGP1
--------->
AtMYB61
*
TSS
<-----------
GT1
<---------
ALFIN1
------>
ZmHOX2a(1)
agatccactaatcaaccacctcaccttctctc
ttttttttttctttctttttttttttttttcttccaccttaagatatttcctcttttgttttaaaaga
4388600
<----------
DOF2
<---------
DAG2
--------->
ARR14(2)
<---------
ARR11(3)
-------
<---------
ARR14(2)
<-------
<---------
AtMYB61
--------->
GLK1(2)
<---------
AHL20(2)
--------->
ALFIN1
--------->
ARR11(3)
<---------
AHL20(1)
<---------
MYB52(1)
------>
ZmHOX2a(1)
<-----------
GT1
<---------------
AGL15
--------->
AHL20(1)
<---------
ANAC58
--------->
AtLEC2
<---------
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
->
DOF2
<---------
ANAC58
<---------
YAB1
----------->
GT1
--------->
TOE2(3)
----------->
GT1
<----
agactatagaccgtgtggttttggttatttttcctgcaaaatctggataatatacttttccattttcttaaaattggtaatcttgtaataaaatagatat
4388700
--------->
ANAC58
<<<<<<<<<<
WRKY26
<<<<<<<<<<
WRKY43
--------->
AHL20(2)
---------->
DOF2
---------->
DOF2
<---------
AHL20(2)
--------->
YAB1
<------
<---------
AHL20(2)
<<<<<<<<<<
WRKY38
<---------
YAB1
-------
<---------
YAB1
<------
MYB46(1)
--------------->
AGL15
--------->
TOE2(3)
<---------
AHL20(1)
----------->
GT1
<---------------
AGL15
-->
CCA1(2)
--------->
AHL20(1)
<------
MYB83
--------->
ANAC58
<-----------------
AGL3
<--
--
ARR11(3)
--------->
AHL20(2)
--------->
MYB59
---------->
DOF2
<-----------------
AGL2
----
-----
AHL20(2)
<---------
MYB59
----------->
GT1
--------->
AHL20(2)
<----------
DOF2
--------->
ALFIN1
aaatctcaattctgttaccaaaatataattcaaaagtaaatttggtcaaatttaaaagcaaaagagggcatgctttctattataggtgtgtttcttctat
4388800
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
YAB1
--------->
AHL20(1)
<---------
TOE2(3)
<---------
ARR11(3)
<---------
ICU4
<---------
AHL20(1)
<---------
ATHB12
<---------
At5g28300
--------->
ARR11(3)
--------->
ICU4
<-----------
GT1
--------->
CCA1(1)
<---------
DAG2
--------->
ANAC58
---
HSFB2a(2)
>>>>>>>>>
EIN3
--------->
AHL20(2)
--------->
ANAC58
-->
HSFB2a(2)
<-------
TEIL
<----------
DOF2
<----------
DOF2
---------->
DOF2
-------
AHL20(2)
--------->
RVE1(1)
<-----------
GT1
--------->
AHL20(2)
--------->
ATHB12
----->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
YAB1
aaatttaccccaatatacattgaaatatctttaaaaatatatattaaacttttttgttttgagcaactatttaaaaactaaaagcaaatcattaagataa
4388900
<---------
STY1(2)
--------------->
AGL15
<---------------
AGL15
<------
ZmHOX2a(1)
<
----------------->
AGL3
<----------
DOF2
---
--------->
ARR11(3)
==================================================================
<---------
ARR11(3)
----------------->
AG
<---------
DAG2
-------
----------->
GT1
----------------->
AGL2
<-----------
GT1
----------->
GT1
--
---------->
DOF2
-------->
P
--------->
STY1(2)
<----------
DOF2
---------->
DOF2
-------
---------->
DOF2
<-----------
ARR10
--------->
AHL20(2)
<---------
TOE2(3)
<---------
aaccaaagaaagtaaaatctatttttcagagaaacttaccaaaactagctattcaagaaaatatactttacctttaggataaaaggaagtaaattacctt
4389000
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AGI:
At3g13460.1
Description:
ECT2; protein binding. similar to ECT4 [Arabidopsis thaliana] (TAIR:AT1G55500.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96645.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275)
Range:
from: 4384721
to: 4388532
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.