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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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     --------->At4g35610
     ----------->RAV1(2)
     <---------At4g35610
-------->P
--------ARR10
--->TEIL                         <----------DOF2              <-----------RAV1(2)
------ARR14(2)                --------->ANAC58                --------->YAB1
----->ARR14(2)          --------->At4g35610                 --------->GLK1(2)
------ARR11(1)        --------->MYB46(3)               ---------->DOF2
----->GLK1(2)       --------->MYB52(1)            --------->DAG2
-----ARR14(1)  <----------ID1 --------->ANAC58   ---------->DOF2 <------ZmHOX2a(1)
 
atctacccatctgaagatgagacaaaccgctgcaagctttaagaagatgagggaaagtgaaagaatcaggagaaacacgagcgagttgcatattggaata  4058800
                                  <-----------GT1
                           <---------ANAC58
                       --------->KAN4(2)                                    --------->At5g28300
                      <---------MYB46(3)                                   ----------->GT1
                     <---------WOX13(1)                                 <---------TOE1(1)
                   --------->ATHB12   ----------->RAV1(2)               <---------TOE2(1)       <---
        --------->ARR11(3) <---------ANAC46                           <------ZmHOX2a(1)         <---
        --------->GLK1(2)  <---------ANAC58<---------YAB1    <---------KAN4(2)>>>>>>>>>GT-1     <---
 
catgagaagagcatcttggaagtgattgttccttgaataacccctgattatagcattccaagggaatatttgaggacgaggtaaatcgtcgaacacttgg  4058900
                                                                                               -----
                                                                                             -------
                                                                                          <---------ANAC58
                                                                                          <---------ANAC58
                                                                                        --------->ALFIN1
                                                                                       ------->MYC2
                                                                                       --------->TOE1(2)
                                                                                       ------->MYC3
                                                                                       --------->TOE2(2)
          <-----------HVH21                                                            <-------MYC3
         <---------bZIP60(1)                                             <---------------AGL15 <----
         --------->bZIP60(1)                                             ===========================
    --------->YAB1                         <------MYB46(1)   <---------ZAT14           <-------MYC2
   --------->DAG2             <---------ANAC58               --------->ZAT14        <---------DOF5.7(2)
  ---------->DOF2             <---------ANAC46     --------->ANAC58     --------->TOE1(3) <---------ANAC46
------ANAC46                  <---------ANAC58     --------->ANAC58     --------->TOE2(3)<-------TEIL
------ANAC58            --------->ARR11(3) <------MYB83    --------->ANAC46     --------->ANAC58
------ANAC58    ---------->DOF2        --------->ZAT2   --------->MYB46(3)      --------->ANAC58<---
 
cgtgcaaaagtaatgtcaccaaaggaagagctagcgtgaatgagcttggtgatcaagaaaccactgaactgcaaacctaaaacaagtaaacgtgcgtgga  4059000
                                                                              ----------->RAV1(1)
                                                                            --------->ZAT18
            <----------DOF2                                                 <------NtERF2
     ----------->RAV1(2)                                                    <---------ZAT14
     <---------At4g35610                                                    --------->At4g35610
     <---------ZAT2                                               --------->LBD16
     --------->ZAT2                                              <---------HSFB2a(2)
     --------->At4g35610                                         --------------->AGL15
   <-----------RAV1(2)                                           --------->HSFB2a(2)
<---------ANAC58                                                <-----------------AGL1
<---------ANAC58                                     --------->YAB1      --------->At4g35610
---->ARR14(2)                            <---------ANAC46       <-----------------AGL2
---->ARR10  <---------DAG2  <---------YAB1         --------->GLK1(2)<---------GLK1(2)
-----ARR14(2)    --------->ATHB12        ----------->GT1        ----------------->AGL3
==================================================================================MADS_MADS
------GLK1(1)   <---------YAB1     <---------------------WRI1   ----------------->AGL2
 
tttgcttcagctgagctttatgagtggcactatcaataagcgaagcgtagaaagaatcagaatggattccagaattggctgcaccaaaaaaaaaaaaaac  4059100
                                                                                          ----------
                                                                                      <---------ANAC58
                                                                                      <---------ANAC58
                                                                                     <---------HSFC1(2)
                                                                                     --------->HSFB2a(1)
                                                                                     --------->HSFC1(2)
                                              <---------ARR11(3)                     <---------HSFB2a(1)
                                              --------->ARR11(3)            --------->ANAC58      <-
                                 --------->ANAC58                           --------->ANAC58    ----
         <---------MYB46(3)      --------->ANAC55(2)            ---------->DOF2    <---------ARR11(3)
     <---------AtMYB61           --------->ANAC46        <---------ZAT14--------->ANAC58  <---------ETT(1)
   <----------DOF2               --------->ANAC58        --------->ZAT14--------->ANAC58  >>>>>>>>>>AtTINY2
 
atttcactttggtggttttgggattgaattggacataagtaacaagagagttcttcttactgtagagcaaaggagaagcaagacaagatgcttccgacat  4059200
                                                        --------->ZAT18                       <-----
  <-----------GT1                            <---------AHL20(2)       ------------>CBF        <-----
 <---------YAB1     *TSS                     --------->AHL20(2) <-----------GT1               ------
->HVH21           <---------YAB1        <--------HAHB4  <---------ZAT14              <---------ANAC55(2)
--------YAB1   ------>ZmHOX2a(1)        <---------ICU4  --------->ZAT14              --------->ANAC55(2)
------->GT1   --------->TOE2(3)        <---------ATHB12 <---------ZAT18            <-----------GT1
 
ggttattactctgtcttccttactattagttttgttatctccatcattttaaatagtagcacactattcacatatcaatgtttgaattacatgttttctc  4059300
                                          <---------ANAC58
                                          =================================================bZIP_DOF
                                          <---------ANAC46
                               <---------AHL20(1)
                        ----------->GT1   <---------ANAC58                                 <--------
                      <---------ANAC58    <---------bZIP60(2)                   <----------DOF2
           <---------AHL20(2)  --------->ARR11(3)                           --------->ANAC58
          <---------AHL20(2)   --------->AHL20(1)                           --------->ANAC46
          --------->AHL20(2)  <---------AHL20(2)                       ------>MYB46(1)     <------NtERF2
  <---------YAB1      <---------ANAC58    <---------TGA1a              ------>MYB83        ---------
 <XXXXXXXXXXXXXXXXXXXXMIR862-5P<---------ARR11(3)                     ----------->RAV1(1) <------NtERF2
----HSFB2a(2)     ==================================bZIP_DOF         --------->AtMYB61    <---------LBD16
----LBD16<---------WOX13(1)  --------->ICU4    --------->PCF2       --------->MYB46(3)   <---------LBD16
--->HSFB2a(2)     ---------->DOF2         <---------O2    ------>ZmHOX2a(1) --------->ANAC58
 
ggaatatgtttgatttatttgaaaagcttgtaaatattttttgtgacttgggcccattctcctaattctctaccaacacaagccttttaaggcccgggga  4059400
                                                                                            --------
                                    -------->HAHB4                     <---------YAB1  <---------AHL20(1)
                                    <--------ATHB1               <---------AHL20(1)    <---------AHL20(2)
                                    <---------ICU4               --------->AHL20(2)    --------->AHL20(1)
                                    --------->YAB1               --------->AHL20(1)   --------->AHL20(2)
                                   <---------ATHB51              <---------AHL20(2)   --------->YAB1
                                   --------->ICU4               <---------AHL20(2)   <---------YAB1
                      --------->ANAC58        ---------->ID1    --------->AHL20(2)<---------YAB1
-LBD16                --------->ANAC58   <----------DOF2    --------->AHL20(2)   <---------GLK1(2) -
>LBD16 <---------AHL20(2)        --------->YAB1  ------>ZmHOX2a(1)     <---------TOE2(3)<---------YAB1
 
gcgatttgatttttttttttagggcaaacaatgtattaataattctttagtcctattgaatgaaaaaataaattaagattgaaagattattatatttata  4059500
                                                                                        ------>MYB83
                                                                                        ------>MYB46(1)
                                                                                      <---------MYB59
                                                                                      <-------------
                                    --------->YAB1                                   ---------------
     --------->YAB1      <---------TOE2(3)         <------ZmHOX2a(1)                 ---------------
  --------->YAB1   <---------ARR11(3)     --------->YAB1    --------->YAB1           <--------------
  <---------ICU4   <---------AHL20(1)  --------->YAB1     ------->TEIL       ------------>MYB.PH3(1)
->YAB1     ---------->DOF2 <------ZmHOX2a(1)     <---------TOE1(3)     ----------->GT1--------------
-------->YAB1   ----------->GT1----------->GT1   <---------TOE2(3)  ------------>MYB.PH3(2)        -
 
actaataataacaaataagcagtatatttaggattagaaaaataatcatattaaggaaatgaatcataagaagtttgttaaaacagttaccaaataagaa  4059600
                    --------->YAB1
    --------->AHL20(2) --------->ARR11(3)
    <---------AHL20(2)<---------CCA1(2)
--AGL15             <---------ICU4                                                   ------>ZmHOX2a(1)
-->AGL1          --------->YAB1                       --------->AHL20(2)            --------->TOE2(3)
-->AG--------->WOX13(1)<---------ARR14(2)           ------>ZmHOX2a(1)          ------>ZmHOX2a(1)
---AGL3          <---------ICU4                    --------->TOE2(3)          <---------MYB59
->AGL15      <-------TEIL                  <-----------GT1               <----------DOF2          --
----------->CBF --------->ICU4     --------->GLK1(2)<----------DOF2   <---------TOE1(3)          ---
 
aacacaattaatcaggctcataatcatatctcggtgagaatctatataacttatcctttaattcttagggtttaagcttttcctaatcctaaatgacatt  4059700
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AGI:  At3g12770.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24211.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 4056837    to: 4059221    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.