Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   >>>>>>>>>>>>>>>>>LFY                               ------->GAMYB                              --------->MYB46(3)                             ------>MYB83                             ------>MYB46(1)                            --------->MYB52(1)                            ----------->RAV1(1)                           --------->AtMYB61                          --------->MYB46(3)                      <-----------HVH21                      <-----------TGA1                                             --------->HSFC1(2)                     --------->ANAC46                                              <---------HSFC1(2)                     --------->ANAC58                                             --------->ANAC58                     --------->ANAC58                                             --------->ANAC58                     --------->bZIP60(2)                                    --------->ZAT2      --------->GLK1(2)--------->TGA2(2)                                    <---------ZAT2 ---------DOF2      <-----------STF1 <---------TOE1(2)                      <---------At4g35610------ ->ZAT6      --------->YAB1--------->MYB46(3)           --------->YAB1      --------->At4g35610------   actttgagattccaattagaaaaacgtcaccaacagtccaatgttctaatcgaatcaaacataacctagtcaagagctagctgcaagcttctatatacct  3237700                                                  <---------ANAC46                                             --------->HSFB2a(2)                                            <---------ANAC46                                            <---------LBD16                                    --------->ANAC58   --------->YAB1                                    --------->O2  <---------ANAC58                                    <---------O2  <---------ANAC58           ---------->DOF2          --------->ANAC58----------->GT1<---------ICU4       --------->GLK1(2)           ------>NtERF2 <---------ZAT2   --------->ICU4                 ----       <---------ARR11(3)       ------>NtERF2<---------HSFB2a(2)--------->YAB1    --------->ETT(2) ------->TEIL                  --------->ANAC46  <---------At4g35610     --------->TOE2(3)      ----- --->TOE2(2)            <-----------GT1    <---------LBD16  --------->MYB46(3)    <---------ETT(2) --->TOE1(2)        --------->CCA1(2)    <---------GLK1(1)<-----------GT1<---------MYB59       ------   atgaaccaaaatctaaagtcagatataaaccttgcgccacgagatttcgggagcttgtaataaccagcatgatgacctaaatcgtcgacagtagggccac  3237800                                                        --------->ZAT2                                                        <---------At4g35610                        --                                                        --------->ZAT14                            <-                                                        <---------ZAT14                            <-                  --------->ARR14(2)                    --------->At4g35610                        --                  <---------ARR14(2)                 --------->LBD16                              <--               --------->LBD16                       <---------At4g35610                          ===             <---------LBD16                         --------->At4g35610                          ---            <---------LBD16                         --------->ANAC46                            -----          <---------ARR14(2)                       <---------LBD16                            -------          --------->ARR14(2)               --------->LBD16                                    -------          --------->KAN4(2)               <---------LBD16                                     <------       --------->YAB1        <---------ANAC58 --------->PCF5                        <------ZmHOX2a(2)     --------->ANAC58    --------->HSFB2a(1)  --------->PCF2                ----------->RAV1(1)<-----     --------->ANAC58    <---------HSFB2a(1)  <---------TCP20              ----------->HVH21  -------     ----------->GT1    ------->TEIL      --------->LBD16             --------->ARR14(2)      <------ ----->AtMYB61--------->HSFB2a(2)        <---------LBD16<---------ZAT2<---------ARR14(2)      <------ ---->MYB46(3)<---------HSFB2a(2)   --------->MYB46(3) ----------->RAV1(1)--------->At4g35610<------- >NtERF2 <----------TaMYB80  <---------ANAC58<-----------HVH21   ----------->GT1    =================   catcggcaagtatattcgggaatacgaacttccgttcaacaatccccggtccctccgcagcagtgagaggcaaatcagcgacatcgatcacattcagatc  3237900    --------->HSFB2a(2)    --------->LBD16   <---------ANAC46                <---------LBD16  <---------LBD16             <---------GLK1(2) ------->ZAT2                --------->At4g35610 --------At4g35610           <---------At4g35610 --------ZAT2             <------ZmHOX2a(2) ------->At4g35610       <---------ARR14(2) ---------RAV1(1)     --------->ANAC55(2) ================================HOX2a_HOX2a --->ZmHOX2a(1)       --------->ANAC55(1) ->ZmHOX2a(2)         <---------ANAC55(2) -->ARR14(2)          --------->ANAC58 -->AGP1  --------->DAG2 --------->ARR14(2)                                 <---------ATHB12 ---ARR14(2)          --------->ANAC58                                      <------ZmHOX2a(2) -ZmHOX2a(2)          --------->ANAC46                                      ==================HOX2a_HOX2a -->ARR11(3)         <---------LBD16            --------->ANAC46        <-------TEIL ---GLK1(2)         --------->MYB52(1)         --------->RAP2.6(3)    --------->TOE1(2) ---ARR11(3)       ----------->HVH21       --------->REM1(2) =================================HOX2a_HOX2a --At4g35610     <---------At4g35610 --------->LBD16         ------>ZmHOX2a(2)--------->WOX13(1) ====HOX2a_HOX2a --------->At4g35610 ------>NtERF2<------NtERF2   ---------->DOF2      <------ZmHOX2a(1)   ctgctgcgggaaaaggtttagctcacggatcagcttctccgcgcgcgtagacggcaagttcgatctctcaaaggtgcgatcattcaagaggaacgatgaa  3238000                                                              <---------------AGL15                                                              --------------->AGL15                                                             <-----------------AGL3                                                             ----------------->AGL3                                                             ----------------->AGL2              <---                                                           <-----------GT1                       ----                                   <------ZmHOX2a(1)  --------->MYB52(2)                        <----                                <-----------RAV1(2)------------>MYB.PH3(2)          <----------------         ---------->DOF2    ---------->DOF2      --------->DAG2                <---------At4g35610  <     <---------ANAC46 <----------ID1            ---------->DOF2           <----------DOF2<----------DOF2   gacggtatcgttgaagcgatgaagacgacgaaatgcaggagaaggctgagaaaagttagtttctccatttttggttctttcaactgtgcttctttttttt  3238100                                                         <------ZmHOX2a(1)                                                   ----------->HVH21                                                   --------->ALFIN1                                                  ------->MYC4                                                  <-------MYC3                                                  ------->MYC3                      <---------ANAC55(1)                                                  <-------MYC2                      --------->ANAC55(2)                                                  <-------PIF5                      <---------ANAC55(2)                                                  <-------MYC4                      <---------ANAC58                                                  ------->PIF5                      <---------ANAC58                                                  ------->MYC2                     <-------TEIL                                                 --------->ANAC55(2)             <---------ARR14(2)                                                 --------->O2                    --------->ARR14(2)                                                 --------->ANAC46        --------->ARR14(2)                                                 <---------O2            <---------ARR11(3) --------GT1                                     --------->TGA1a         --------->ARR11(3)       --- ------>ID1                         <------ZmHOX2a(1) <---------ANAC46   <-----------ARR10    ------- -------GT1                       --------->ALFIN1-------->ABF1         --------->RVE1(1)  --------->LBD16 --------ANAC81              <---------LBD16     <---------TGA1a        --------->CCA1(1) --------->LBD16 ----------DOF2   *TSS------------>CBF    <---------KAN4(2)   <-----------HVH21  <---------MYB52(1)--   tccttttctgagattgttgtatacaacaatttgggggaggagagaatgtacacgtggcaggaactatcacagaaatatcttccgatacgtgcccgagaaa  3238200                                                                                          --------->ANAC46                                            <---------ANAC58                              --------->ANAC58                                            <---------ANAC58                              ===========                                            --------->ANAC55(2)                           <---------TGA1a                                            ----------->GT1                               --------->ANAC58                                         <---------MYB52(1) <---------TOE2(3)     ==================MYC_MYB                                    ------->TEIL            <---------TOE1(3)     <-------GAMYB                                    <---------ARR14(2)     <---------DOF5.7(2)   <---------MYB46(3)                                    --------->ARR14(2)     --------->MYB52(1) ------------>AtMYB77                                    --------->GLK1(2)    --------->ARR11(3)   ======================MYC_MYB                               ----------------------->TaNAC69(2)   <---------ANAC46      --------->TGA1a                               <------MYB83 <---------ANAC55(2)<---------MYB52(1)<---------DEAR3(2)     <----------DOF2           ----------->GT1          --------->YAB1<------NtERF2<---------MYB52(1) ------>ALFIN1                 <------MYB46(1)       ---------->DOF2<---------ANAC58 --------->MYB59 --->DOF2                     <---------MYB46(3)     ===============================================bZIP_DOF ------->ALFIN1               --------->MYB55(2) --------->REM1(1)  <---------ANAC58 --------->MYB46(2)   gttggggctattttgcgaaatatgagaaatagtgggtgaatctgttacgttacaacaaagataacgtttggcgtagtaatcgacggttaggcacgcgagt  3238300                                                                                         --------->TOE1(2)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <------NtERF2                                                                               --------->LBD16                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               <---------RAP2.6(3)                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              --------->LBD16                                                                              --------->HSFB2a(2)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              --------->RAP2.6(2)                                                                             <---------LBD16      ---                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->LBD16                            ------>MYB83--------->MYB46(3)                            --------->TCP20                                 --------->MYB52(1)  <----                            <---------PCF2                       <---------AHL20(1)     <xxxxxxxxxxxx                            --------->TCP15(1)           ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <---------TCP23           --------->AHL20(1)     <xxxxxxxxxxxxxxxxsmallRNA(s)                           <---------TCP15(2)        <---------AHL20(2)     <xxxxxxxxxxxxxxxxsmallRNA(i)                     <---------ANAC58                --------->AHL20(2)<-----------GT1  <xxxxxxxxxxxx                     <---------ANAC58   <---------AHL20(2)       --------->ARR11(3)    <xxxxxxxxxxxxx          ---------->DOF2 <---------MYB46(3) ----------->GT1     <---------ARR11(3)<xxxxxxxxxxxxxxxxx      --------->ANAC58   --------->ALFIN1<---------AHL20(2)      --------->AHL20(1)<xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ANAC58 --------->ALFIN1 --------->AHL20(2)----------->GT1----------->RAV1(2)--------- ====================bZIP_DOF--------->PCF2---------->DOF2--------->TOE2(3) ------>MYB46(1)<xxxxxxxxx   tgaatgtgaagcaaaagatggatgagtgtgggtcccagataatttaaaagtgaaataaaatgttaaaaatattcaacctgccggaatcgaaccagcgacc  3238400                                                        <------MYB83                                                        <---------DEAR3(2)                                                        <---------MYB46(3)                                                   <---------TOE2(3)                                                   <---------TOE1(3)                                               <---------At4g35610                                               --------->At4g35610                                              <xxxxxxxxxxxxxxxsmallRNA(fl3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                            <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          ------>MYB83  <------MYB46(1)                                          ------>MYB46(1)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          ----------->RAV1(2)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         --------->MYB52(1)         <---------TOE2(3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <---------MYB111(1)        --------->YAB1                                        --------->MYB46(3)         --------->AHL20(2)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <-                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        --       --------------------->WRI1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          <-       *TSS                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <--       <----------DOF2               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <--   --------->GLK1(1)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                        ---   <---------GLK1(1)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <-----  <---------ARR11(3)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    ------  --------->ARR11(3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------AHL20(1) xxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  --------->AHL20(1) xxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->AHL20(2) xsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->AHL20(2) xsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->AHL20(1) ------->DOF2                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------ARR11(3) -----MYB59                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ZAT6------- xxxxxxxsmallRNA(le3)              <----------DOF2 <---------AtMYB61<---------YAB1    <---------AHL20(1) xxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1  --------->AHL20(2) xxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(s)<---------DEAR3(1)       <-----------GT1------ xsmallRNA(se3)   --------------->AGL15<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <-----------GT1 <------ >DEAR3(1)     <-----------GT1xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)----------->TBP xxxxxxsmallRNA(le3)   --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------TOE2(3)<---------AHL20(2)   taaagatttctttggaattacccattacagtcttccgctctaccaactgagctaaggtcggtttgatattaatattaagtttacactatatattaaatta  3238500 <---------YAB1 --------ICU4 ------->ATHB51 ------->YAB1             <-------MYC3 ------>ATHB1             ------->MYC3 ------>HAHB4            <---------TGA1a -------HAHB4            <---------ANAC55(2) -------ATHB51           --------->ANAC55(2) -------YAB1             <---------O2 ------>ICU4             --------->O2 --------->TOE1(3) ----AHL20(2)            --------->TGA1a                                         <---------YAB1 --->AHL20(1)            <---------ANAC46     <---------AHL20(2)           --------->ALFIN1         - -->AHL20(2)           <---------ALFIN1    --------------->AGL15   <---------REM1(2)               -- --->AHL20(2)         ----------->HVH21    <---------------AGL15  <---------HSFB2a(2)             --- ---AHL20(2)          <------NtERF2   --------->TOE2(3) ----------->GT1  --------->ALFIN1       -----   attattacaaaaacacttatgggcctcacgtgaatgtaaaccttacattttatagtgaatgtaatattctacaaggtgtgtttctgattagaaggcccaa  3238600  Previous    Next  AGI:  At3g10410.1    Description:  SCPL49 (serine carboxypeptidase-like 49); serine carboxypeptidase. Identical to Serine carboxypeptidase-like 49 precursor (SCPL49) [Arabidopsis Thaliana] (GB:P32826;GB:Q42107;GB:Q9CAE5); similar to SCPL48 (serine carboxypeptidase-like 48), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G45010.1); similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to serine carboxypeptidase precursor [Matricaria chamomilla] (GB:AAD42963.2); similar to carboxypeptidase type III [Theobroma cacao] (GB:CAC86383.1); similar to putative serine carboxypeptidase precursor [Gossypium Range:  from: 3235296    to: 3238118    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10415.1    Description:  pre-tRNA. tRNA-Tyr (anticodon: GTA) Range:  from: 3238372    to: 3238407    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.