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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
At4g35610
--------->
GLK1(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(2)
--------->
ANAC58
--------->
ANAC58
<---------
ICU4
--------->
At4g35610
--------->
GLK1(2)
<---------
ZAT2
--------->
ARR14(2)
--------->
ZAT2
<----------
DOF2
<---------
ARR11(1)
<---------
At4g35610
<---------
ANAC58
<-----------
ARR10
--------->
ANAC58
<---------
ANAC58
------->
TEIL
<-----------
ARR10
--------->
ANAC58
<---------
ANAC46
<---------
ARR14(1)
--------->
ANAC46
--------
MYB52(1)
<---------
CCA1(2)
<---------
ALFIN1
<----------
DOF2
--
ANAC58
<---------
MYB52(1)
<---------
ARR14(2)
--------->
ANAC46
--------->
YAB1
--
ANAC58
---------->
DOF2
<----------
DOF2
<---------
AtLEC2
<-----------
GT1
<---------
AHL20(2)
cgttgcttttgaaaagaaccgttgttctttggtcttcgaatctttgcaagaatctgcccattttcacacaccagctccatataatcttcatcttttaat
c
19304500
--------->
YAB1
----------->
RAV1(1)
----------->
HVH21
<---------
ANAC55(2)
--------->
DEAR3(1)
--------->
ANAC55(2)
--------->
At1g77200
<---------
ANAC46
--------->
DEAR4(1)
----------->
GT1
--------->
MYB46(3)
--------->
ANAC58
--------->
DREB2C(2)
--------->
ANAC58
<----------
ID1
--------->
DEAR3(2)
<---
<-----------
HVH21
<------
ZmHOX2a(1)
--------->
MYB46(3)
----
---------->
DOF2
--------->
At4g35610
--------->
ANAC46
<---------
ZAT18
--------->
ANAC58
<-----------
GT1
<-----------
RAV1(2)
--------->
ANAC58
--------->
ZAT18
--------->
ANAC58
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
---------->
DOF2
tgcaagaaaagagtcacgtataaataacctattaacaaaaaaaaaatagtcaggagaagacaaaattgtttcaagcaccgacagaaccataagcgcccat
19304600
--------->
ARR14(2)
<---------
ARR14(2)
<-------
MYC2
------->
MYC3
<-------
MYC3
--------->
ALFIN1
--------->
ANAC46
--------->
DAG2
--------->
YAB1
--------->
ANAC58
----------->
GT1
<---------
YAB1
--
--------->
ANAC58
<---------
HSFB2a(2)
--------->
YAB1
<----------
DOF2
<---------
YAB1
------
ICU4
------->
MYC2
--------->
HSFB2a(2)
--------->
TOE1(3)
--------->
ATHB12
<--
----->
ATHB51
------->
TEIL
<---------
YAB1
---------->
DOF2
--------->
TOE2(3)
<---------
TOE2(3)
-----
tatttcaaaaccacgcatgtgtatatgtttatagaagtcgcaaaaagtgtagatgaaaccataataaacttac
tttggtttaatgtttgatgatggagaa
19304700
<---------
At4g35610
--------->
At4g35610
<-----------
RAV1(2)
<------
MYB83
<------
MYB46(1)
<---------
TOE1(3)
<----------
DOF2
--------->
MYB59
--------->
MYB52(1)
<---------
ANAC58
--------->
ATHB12
<---------
YAB1
<---------
ANAC58
<--------
<---------
YAB1
<---------
YAB1
<---------
ZAT14
<-----------
GT1
<---------
LBD16
------->
YAB1
--------->
YAB1
--------->
ZAT14
<----------
DOF2
<-----------
GT1
-------
ATHB12
--------->
ICU4
<---------
ANAC58
<----------
DOF2
<-----------
GT1
---->
GLK1(1)
<---------
YAB1
<---------
ANAC58
---------->
DOF2
---------->
ID1
--------->
LBD16
atcatgtttggttcagatgatgatgatgctaagggttttgcttccat
tgaagtaaactgaacaaagctttctttacttgtctttttttttttccggtttt
19304800
<------
MYB46(1)
<---------
DEAR3(2)
<---------
MYB46(3)
<------
MYB83
--------->
ZAT14
--------->
AHL20(2)
<---------
ZAT14
<---------
AHL20(2)
<-------
TEIL
<---------
AHL20(2)
--------->
GLK1(2)
--------->
AHL20(2)
--------->
CCA1(2)
--------->
AHL20(2)
--------->
ARR14(1)
<---------
AHL20(2)
--------->
ARR11(1)
<---------
ANAC58
--------->
AHL20(2)
--------->
ARR14(2)
<---------
ANAC58
--------->
AHL20(2)
<-------
GAMYB
<---------
ARR14(2)
<----------
DOF2
--------->
At4g35610
<---------
DREB2C(2)
----------->
GT1
<---------
GLK1(2)
<<<<<<<<<
MYB2
<---------
TOE2(3)
<---------
AHL20(2)
*
TSS
-
MYB52(1)
----------->
ARR10
<----------
DOF2
<-------
GAMYB
----------->
RAV1(1)
<---------
DEAR3(1)
tgtgaattgtagaatcagagagattcggacttcacactttggttttctttcttggggttaatgaagagcagcatatatatatatatatagtcggt
tgtat
19304900
<---------
WOX13(1)
<------------
CBF
<---------
YAB1
--------->
ATHB12
<---------
ICU4
--------->
YAB1
--------->
ZAT18
----------->
GT1
<---------
ARR14(2)
<---------
WOX13(1)
<---------
ZAT18
--------->
TOE2(3)
--------->
ARR14(2)
<------------
CBF
<---------
AtMYB61
<---------
YAB1
--------->
ICU4
--------->
KAN4(2)
--------->
ATHB12
--------->
ARR14(2)
<---------
AHL20(2)
<---------
YAB1
<----------
TaMYB80
<---------
YAB1
<---------
ARR14(2)
<---------
AHL20(1)
<---------
YAB1
------->
TEIL
<---------
AHL20(2)
<------
ZmHOX2a(1)
<---------
CCA1(2)
--------->
YAB1
-
atatgtatattcgcttatttcatttatgattgattgatatggaggatttgttttggtccacaactcatatatttatccttgaatcgtgattatgacacag
19305000
--------->
TOE2(3)
<---------
MYB59
<-----------
GT1
-------->
ATHB1
<---------
DAG2
--------->
ATHB51
<----------
DOF2
<---------
ICU4
<---------
ANAC58
--------->
AHL20(2)
<---------
ANAC46
<---------
AHL20(2)
<---------
ANAC58
--------->
ICU4
<---------
At4g35610
<---------------
AtSPL8
<---------
At5g28300
<---------
ICU4
--------->
TOE1(3)
<-----------
GT1
--
--------------->
AtSPL8
--------->
ETT(2)
<---------
AHL20(2)
<---------
AHL20(2)
---------->
GT1
<---------
ATHB51
<---------
AtMYB61
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
tatggagaattagtacaaattattaccttacaaactttggtcgacttcaaatgttacatttcagatttataaaatttacagttgcttttttttaatacaa
19305100
<---------
HSFB2a(2)
--------->
YAB1
--------->
HSFB2a(2)
<-------
TEIL
<-------
MYC2
--------->
AHL20(2)
-----
------->
MYC2
--------->
YAB1
-----
<-------
MYC3
<---------
YAB1
-----
<---------
AHL20(2)
------->
MYC3
--------->
YAB1
<---------
ICU4
-----
<---------
ARR11(3)
--------->
ANAC58
<---------
AHL20(2)
<------
<---------
AHL20(1)
--------->
ANAC58
--------->
AHL20(1)
-------
--------->
ARR11(3)
<---------
TOE2(2)
<---------
AHL20(1)
<-------
<---------
CCA1(2)
<---------
TOE1(2)
--------->
AHL20(2)
--------
------->
TEIL
--------->
ARR14(2)
--------->
AHL20(2)
<---------
YAB1
<---------
ZAT14
--------->
GT1
<---------
ARR14(2)
--------->
AHL20(2)
--------->
YAB1
--------->
ZAT14
aacgtatatatttgtttgtatatgtgaaatgagttttcgcacgttttatagaaaaaatataatcataaattcataataacatagactatactatatatac
19305200
---------->
DOF2
---->
ANAC55(2)
---->
ANAC58
---->
ANAC58
---->
ANAC46
--------->
AHL20(1)
--------->
ARR11(3)
-----
GT1
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
-->
CCA1(2)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
ANAC58
--
ARR14(2)
<---------
CCA1(2)
--------->
YAB1
--------->
ANAC58
->
ARR14(2)
<---------
ZAT6
----------->
GT1
--------->
AHL20(2)
---------->
DOF2
gcgataaagagtagtataagtattcatgttaatgtgtaaatctttcattttaaaacaaaaatattgatggaataaatgaaagaagcaagataatgtatgg
19305300
--------->
At4g35610
<---------
ALFIN1
---------->
DOF2
------>
MYB83
<---------
ALFIN1
--------->
HSFB2a(2)
<----------
ID1
------>
MYB46(1)
--------->
DEAR3(1)
<---------
HSFB2a(2)
---------->
DOF2
----------->
HVH21
--------->
ANAC46
<----------
DOF2
------
<---------
ZAT6
<---------
YAB1
--------->
ZAT14
<-----------
GT1
---------->
DOF2
gcgatagtgaaagacaaagaaatagagagagagacattcttatgaccgacttctctactctccaccgctccatttttctctgctttcggaaaaagaatag
19305400
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AGI:
At2g46970.1
Description:
PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor. similar to PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) [Arabidopsis thaliana] (TAIR:AT3G62090.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO17337.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
Range:
from: 19302559
to: 19304895
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.