Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->AHL20(2)                                                    --------->DAG2 --------->AHL20(2)                                          <---------ZAT14        <---------AHL20(2)            ------                                          <---------ZAT18     --------->AHL20(1)             --------                                          --------->ZAT14     <---------AHL20(2)        <---------AHL20(2)                                          --------->ZAT18     --------->AHL20(2)        --------->AHL20(1)                                    --------->ANAC55(2)      <---------AHL20(2)    <---------AHL20(2)          ----------->RAV1(1)       <---------ANAC55(2)----------->GT1             --------->AHL20(2) ------->DOF2                      --------->MYB59 ---------->DOF2<---------AHL20(2)    --------->AHL20(2) ----->RAV1(1)                     <---------------AtSPL3    --------->AHL20(2)    --------->AHL20(1)   caaagtcaagacccacaaaaacatttttgttttgggttatgtactgcacaaaaaaaagtgtaaataatttaaaataaacccaaaataaaataaaatagag  19236000                                                              <---------ANAC58                                                              <---------ANAC58                                                              <---------ANAC46                                                             --------->ATHB12                                                            <---------YAB1                                     <---------GLK1(2)     <---------TOE2(3)          <------MYB83             --------->KAN4(2)     --------->AHL20(2)   <---------YAB1                <------MYB46(1)            <---------KAN4(1)      <---------AHL20(2)<---------YAB1                  --------->MYB59      <---------At4g35610 --------->ANAC55(2)        <---------AHL20(2)       <---------WRKY12      --------->At4g35610 <---------ANAC55(2)  <---------MYB52(1)             <---------WRKY38(1)   - ----->GT1  --------->KAN4(1)   <---------AHL20(2)  <---------AHL20(2)        <---------WRKY45 <----- --->GT1  <---------GLK1(2)     --------->AHL20(2)<---------YAB1             --------->WRKY18(1)   <-   aaaaattcagcagattattctcttcgatatgtattaaaaaattctcacagttatttttattaatgcttggagacgaatggtcaaagtttggttttatttt  19236100          ---------->DOF2        <---------YAB1      -------->HAHB4      <---------ICU4      --------->YAB1     --------->ICU4 --------->YAB1                                                                  -   --------->YAB1   <---------ICU4                                                         --------->ANAC58  <---------YAB1   --------->ICU4                                 --------->ANAC58         --------->ANAC58 -------->YAB1  <---------AHL20(2)                                --------->ANAC58       --------->CCA1(2) ----AHL20(2)   --------->AHL20(2)      <---------ATHB12      <---------At4g35610 --------->ANAC46  < --------YAB1----------->GT1          --------->GLK1(1)       --------->At4g35610--------->ZAT18   --   tttgataataatgaaagtttaattatcaagaattttgcagaaatcaagagagaaggttgaagacagcgaagcaaatgtttatgtacacaagagacgcata  19236200                                        <----------DOF2                                             -                              <---------ANAC58                                                    <--                    ----------->GT1     <---------DAG2                                           <---         ---------->DOF2      <---------ANAC58                                                  <----    --------->AHL20(2)       --------->MYB59  ------>ZmHOX2a(1)                              <------- -------->AHL20(1) --------->DAG2      <---------ANAC58                                      <------- ---------AHL20(1)--------->DAG2       <---------ANAC58      <---------ANAC58                <------- ------->AHL20(2)---------->DOF2<---------GLK1(1)            <---------ANAC58           <------------CBF   aatatataaaatacagcgaaaaaggtaaaattgggtctctggcttttcctcatattttcaattgcttctctcttctctcttctatagccccattgtcgtg  19236300                                                                                                   <-                                                                                                   <-                                                                                                   --   --------->ZAT6                                                                                <--- -------->PCF2      ---------->ID1                                                             ------ -------PCF2    <---------ANAC58                                                           <--------- ------DEAR3(2) <---------ANAC58                                                         ------------ -----TOE1(2)<----------DOF2                                                             ============ --ANAC46  <---------At4g35610          --------->TOE2(3)                                <----------- --ANAC58  --------->ZAT2 ------>ZmHOX2a(1)                       <-----------GT1     <-----------GT1 --ANAC58  --------->At4g35610     <----------DOF2             *TSS         ------>ZmHOX2a(1)  <-----   ggttcccactagcagctttcttgtcttcctccattttcttttccttcattctactaaaacagaggtttttgcctcttcctctcttgtttcactctttagg  19236400  --------->ANAC58  --------->ANAC58  --------->ANAC46 --------ZAT14 ------TEIL                                                                                  <------- ------->ZAT14                                                                               <------- ------ZAT18                                                                             <---------ANAC58 --------->AtSPL8                              <---------At5g28300                       <-------GAMYB -DOF2                   <----------DOF2  --------->DAG2                         <---------MYB52(1) --->AGL15     <----------DOF2           ---------->DOF2   ------>ZmHOX2a(1)   <---------ANAC58     - ========================================MADS_MADS         ==================HOX2a_HOX2a <---------ANAC58 ----AGL15<-----------GT1--------------->AGL15<-----------GT1                  <---------ANAC58   <-- ----------AtSPL8  <-----------GT1 --------->ALFIN1    <-----------GT1<------ZmHOX2a(2) <---------MYB46(3)   gtacacacaaattcactcttttttcttctttgtttgggaggggaaaagttacagttttttcctctgttttggatcaaaatttcgtttttttggttgtgtt  19236500     ----------->RAV1(1)     --------->MYB52(1)  --------->ANAC58                                                       --------->WOX13(1)  --------->ANAC58                                            <---------LBD16 --------->LBD16 --ANAC46                                             <---------ANAC46--------->ANAC58 --ZAT6 ------->GAMYB                                 ----------->GT1 --------->ANAC58 --------->DOF2                                 <---------TOE2(3)    --------->DAG2         ------->GAMYB -------TOE2(3)        --------->ATHB12         <---------TOE1(3)   ---------->DOF2      ----------->RAV1(1)   aagaaagcaacagagagagagagaaagattgaaactttggatgtgaatttagggttttgtgaattggggaaaaagcaatccagagatggctcaacagaga  19236600                       <---------YAB1                     <---------ICU4                     --------->YAB1                    --------->ICU4                    <---------YAB1               ----------->GT1                     <---------ARR11(3)              --------->ALFIN1                     --------->GLK1(2)            <------MYB83          <---------ARR14(2)    <-----------RAV1(1)                        --            <------MYB46(1)       --------->ARR14(2)  <----------DOF2                              <-           <---------AtMYB61 ----------->RAV1(1)   --------->ARR11(3) <---------ANAC58             --     <---------At4g35610--------->YAB1             <-----------ARR10  <---------ANAC58    <-------TEIL     --------->At4g35610-------->HAHB4     --------->WRKY12     <------ZmHOX2a(1)        --------->CCA1(2)   caatttcagatggaaggtggtaataataatacaacagataccaagttgacgaaaatctttgttggaggattagcttgggagactcagagagatacaatga  19236700                                                                          --------->CCA1(2)                                                                         <---------ARR14(2)                                                                    ---------->DOF2                                                                  =============HOX2a_HOX2a                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                 ==============HOX2a_HOX2a                                                                 --------->CCA1(2)                                                                --------->AGP1                 <---------ANAC46                               <---------ARR14(2)                 ----------->GT1                                <---------AGP1                 <------MYB83                         <---------ZAT14    --------->ARR14(2)                 <------MYB46(1)               --------->YAB1   --------->ARR14(2)     <----------DOF2                      <---------YAB1        --------->ARR11(3) <---------MYB52(1)          ---------->DOF2  <---------ZAT6    <-----------ARR10 ------->O2     --------->MYB111(2)       --------->ICU4        <---------ARR11(3)   --------------->AtSPL8 --------O2     --------->MYB46(2)     <---------YAB1 --------->ZAT14   <------ZmHOX2a(1) --------->GT1<---------MYB52(1)<---------At4g35610  <<<<<<<<<<<<<<<<<LFY--------->ARR11(3)   gacgttactttgaacagtttggtgaaatcgttgaagctgttgtcattactgataagaacactggaagatctaaaggatatggatttgtatgttccttctt  19236800                                                                             <---------ANAC55(2)                                                                             <---------ANAC46                       --------->YAB1                                    <-----------HVH21    <------                    --------->YAB1                                      <------MYB83    <---------ZAT2                 <----------DOF2                                        <------MYB46(1) --------->ZAT2             <---------MYB52(1)                                        --------->MYB59  --------->At4g35610           <---------ANAC58                                        --------->ATHB12     <---------At4g35610           <---------ANAC58--------->DAG2                         <---------AHL20(2) <------ZmHOX2a(1)          ---------->ID1  ---------->DOF2                     <---------AHL20(2)   <---------TOE1(3)      <----------DOF2 <---------YAB1<----------DOF2          <---------AHL20(2)    <---------TOE2(3)   ctctctctctttttcgtttctttgatgataaagtttctctttttctctgaaaaaatcagtttttttatttgattaggtcacgtttaaggaagctgaagca  19236900  Previous    Next  AGI:  At2g46780.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to unknown [Populus trichocarpa] (GB:ABK93394.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19236363    to: 19238574    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.