Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------WRKY18(1)                                                                        --------->WRKY12                                                               <---------AHL20(2)                   <                              <---------ANAC58                <---------AHL20(2)                    -                              <---------ANAC58                --------->AHL20(2)                  <--                       --------->YAB1          ------>MYB46(1)<---------AHL20(1)                  <--                 --------->AHL20(2)            ------>MYB83  --------->ICU4<---------WOX13(1)<<<<<<<<                 <---------AHL20(2)  --------->ANAC58   --------->YAB1<-------GAMYB      --------->TOE2(3)                <---------AHL20(2)   --------->ANAC58   ----------->GT1 --------->WRKY38(1)  --------   tgctcattcactagaaaaattattttcatatttcgtctcaagaaaaaccaaattggaattgtaatttttttgggttgactgactcagtcttcgtcaaaag  19065000                                 --------->ATHB12       <---------DAG2            --------->ATHB51       <----------DOF2        <---------ICU4 --------->ANAC46             --------->YAB1 ---------At4g35610       --------->AHL20(2) -------->At4g35610       <---------AHL20(2) -------WRKY38(1)         --------->AHL20(1)                                 <<<<<<<<<TBF1 -------WRKY12  <----------DOF2 <---------YAB1                          <---------CCA1(2) <<<<WRKY18 <-----------GT1  <---------YAB1     <----------DOF2      <-------TEIL -->DOF2   <-----------GT1<---------AHL20(1)  ---------->ID1    <-----------RAV1(2)              ----   tcaactcaactttattccctttccaaaatttattattattgaaaacttgtctttttcatgtgtgttccaggctcgtttcttcttcacttagtttcaattc  19065100                                                                                        <-----------GT1                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                   <---------ICU4                                                                                  <---------AHL20(2)                                          <---------YAB1                          <---------ATHB51                                         --------->ARR11(3)                       --------->AHL20(2)                         --------->ICU4  <---------ARR11(3)                       --------->ICU4                      ----------------->AGL2                                 --------->ANAC46                      ----------------->AGL3                                 --------->ANAC58     ---                      ================================================================MADS_MADS   <--            <---------ICU4           <---------ICU4                          --------->ANAC58    <--- --------------->AtSPL8<---------------AGL15                          --------------->AGL15 <-------- <---------------AtSPL8--------------->AGL15                          =============================== ------>DOF2<-----------GT1         <---------YAB1                    <---------------AGL15--------->TOE2(3)   aaagttgtactaaatcactacttcgccaaaattagaacatcattatcttcgagggtctcttctctcttcatactacttcaagaaataattaaaccttttt  19065200                    <------NtERF2                   --------->HSFB2a(2)           <---------HSFB2a(2)                   <---------HSFB2a(2)           --------->HSFB2a(2)                  --------->ETT(1)               --------->LBD16                  <---------LBD16               --------->HSFB2a(2)                <-----------HVH21               <---------HSFB2a(2)               <-----------RAV1(1)              <---------ANAC46          <----------DOF2                       <---------LBD16                               <------      <-----------GT1          --------------->AtSPL3                                         <------  <----------DOF2 <---------ANAC46             <---------LBD16      --------->YAB1        <---------ZAT18 ------->ID1   ------>ZmHOX2a(1)           <---------------AGL15  <---------KAN4(2)    <---------MYB46(3) ---------GT1<---------ANAC58  --------------->AtSPL8         <---------HSFB2a(2)   --------->TOE2(3) --------GT1 <---------ANAC58  <---------------AtSPL8         --------->HSFB2a(2)--------->RVE1(1) --DOF2  <---------ICU4    <----------DOF2 <----------DOF2<---------GLK1(2)      --------->CCA1(1) ==========================================================MADS_MADS<---------ICU4--------->ARR11(3)<   ttcccttttaatctttcctgtcgggaagacttttaagtaccatttcttttccgggaaacaaattctcgaataatcacagaaaaataccttggttcacttt  19065300            ------>ZmHOX2a(2)                                      *TSS <---------At5g28300       <---------TOE2(3)                 XXXXXXXXXXXXXXXXXXXX>MIR396B ----DOF2 --------->ARR11(3)                                <-----------GT1        ----------->GT1 ---DAG2  <---------ARR11(3)                                XXXXXXXXXXXXXXXXXXXX>MIR396A -----------GT1  <------------CBF     <----------DOF2<----------DOF2 <----------DOF2          <------   ttttactgtatagatcgtccattgaaatcaaggttttattctttaaaactttggtctttatttcacaacttctttgaacttcaaatagtttaaaatttac  19065400                                                                            --------->AHL20(1)                                                                            <---------AHL20(2)                                                          <---------HSFB2a(2)                                                     <----------DOF2   --------->AHL20(2)                                             <---------ZAT2          ----------->GT1                       --------->TOE2(3)     --------->At4g35610 --------->ALFIN1                      <---------ANAC46       --------->ZAT2     <-------MYC3<---------AHL20(1)                   <---------MYB52(1)<---------MYB52(1)   --------->HSFB2a(2)<---------AHL20(2) -----GT1   <-----------GT1   <-----------GT1<---------At4g35610------->MYC3--------->AHL20(2)   tctgtttcatcaaattactctgtttcgtcaaattactctgttttgtcagcttgctcttttctaaaacgtggaagtaaataaaattttgacataagtatat  19065500                 --------->GLK1(2)              ------->TEIL                 --------->ARR14(2)             --------->ARR14(2)                 <---------ARR14(2)             <---------ARR14(2)                                  -                <---------GLK1(2)            <---------YAB1                                        <-           <-------TEIL                    --------->YAB1         <-------TEIL                    ---    ----------->RAV1(1)          --------->WOX13(1)   ---------->DOF2<---------MYB52(1)       <------    <---------ALFIN1 <---------LBD16      --------->ICU4  <----------ID1                   <---------   tttctcccacaggttcaagaatctgtggaagaaaacaatcagcgatgatgaatccccaaagaaacaaattcgtaaggtttgtatcaattcttccttttga  19065600   <--------ATHB1   -------->HAHB4   --------->ATHB51   --------->YAB1   <--------HAHB4                     --------->ATHB12   <---------ICU4                    --------->AHL20(2)  <---------YAB1                     <---------AHL20(2)  --------->AHL20(2)                <---------WOX13(1)  --------->ICU4                  --------->ATHB12  <---------ATHB51             ------>ZmHOX2a(2)                                                    - -------->YAB1               <---------ARR11(3)                 --------->ICU4                      < --------AHL20(2)            --------->ARR11(3)              --------->ICU4                         < ------>AHL20(2)         ------>ZmHOX2a(2)     --------->LBD16  <---------YAB1                      < ---YAB1               <---------ARR11(3)     <-----------RAV1(2)                       --------->HSFB2a(2) -DOF2<-----------GT1  --------->ARR11(3)    ------>ZmHOX2a(2)--------->YAB1   --------->AtMYB61    -   tttaataattacgatgttatgaagtgatcttgatcttgatttattgatccaggtttaatggaaatgatgatgagttttcgaccaaaactactagaccatc  19065700                                     --------->DAG2                                  <---------HSFB2a(2)                                  --------->HSFB2a(2)                                 ----------------->AGL1                             --------->ZAT2                             --------->HSFC1(2)               ------------>MYB.PH3(1)--------->DAG2                     <---------MYB52(1)            --------->YAB1   --------->HSFB2a(1)                  <---------At4g35610           <---------YAB1    <---------ZAT2                       --------->At4g35610        <---------MYB52(1)   <---------HSFC1(2)                ---------->DOF2 -------->ARR14(2)           <---------HSFB2a(1)             <----------DOF2                       -- ---------ARR11(3)          ------->TEIL                 <---------GLK1(2)---------->DOF2        ---- ---------ARR14(2)       --------->ANAC46 <-----------HVH21 --------->TOE2(3)    <-------TEIL ------- -----------ARR10   <---------MYB52(1)------------------------>ANAC81------>NtERF2  --------->AtLEC2 -------->ARR11(3) <-----------HVH21---------->DOF2   --------->YAB1--------->RAP2.6(2)    --------->YAB1   agtatcttcagttatgaaaaccgttagacgaagcttcgaaaaggggtcagagaaaatcagaacctttaagcggcccttaagcgttcattcaaataagaat  19065800                                                    <---------ARR11(1)                                                    <---------ARR11(3)           <---------ANAC58                                                    <---------ARR14(2)  --------->ARR11(3)                     <---------ARR14(2)             --------->ARR14(2)  <---------GLK1(2)<-----------RAV1(1)                     <---------ARR11(3)             --------->ARR11(3)  <---------ARR11(3)      --------->YAB1 --------->ARR14(2)            <---------CCA1(2)    --------->ARR14(3)        <--    --------->AHL20(2)               <---------ARR14(2)                 <---------ARR14(3)  <-------- --------->AHL20(2)  --------->ARR11(3)    --------->SPL7    --------->ZAT2      <---------ANAC58<--- --------->GT1     ----------->ARR10 ------->TEIL--------->YAB1         --------->ARR14(2)<-------GAMYB ------>DOF2   >>>>>>>>>TBF1         --------->ARR14(2)   ---------->DOF2    <---------ANAC58    <--- -->YAB1 --------->YAB1           <---------YAB1<-------TEIL <---------ZAT2  <---------ANAC58 <------   aaagaaaataataagaagaagaagatactaagagtgatgaatccgaacgattcatatcttcaaagctggaacaagattttcttgcttctctctgttgtgg  19065900  Previous    Next  AGI:  At2g46430.1    Description:  ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Probable cyclic nucleotide-gated ion channel 3 (CNGC3) [Arabidopsis Thaliana] (GB:Q9SKD7;GB:Q9XFS1;GB:Q9ZPK1); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G53130.1); similar to ATCNGC13 (cyclic nucleotide gated channel 13), c Range:  from: 19065367    to: 19068509    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.