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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
ARR10
--------->
ANAC58
--------->
ANAC46
<---------
ZAT2
<---------
ARR14(2)
--------->
At4g35610
--------------->
AGL15
<---------
ARR11(3)
--------->
ZAT2
<---------
REM1(1)
--------->
ARR14(2)
--------->
ANAC58
==========
<----------
DOF2
<---------------
AGL15
--------->
GLK1(2)
<------
ZmHOX2a(2)
<---------
At4g35610
------>
DAG2
--------->
TOE1(3)
--------->
ANAC58
<------
NtERF2
================================
HOX2a_HOX2a
------>
DOF2
--------->
TOE2(3)
<---------
ANAC55(2)
<---------
ATHB12
--------->
ANAC58
<------
ZmHOX2a(1)
aaagtgcttaattgtagcaaacctaaaaatagaagaatacgcaaaatctaac
ctcggcaatgaaatcgatcagacaagccttgtccagctacaggaccga
18693000
--------->
LBD16
--------->
GLK1(2)
<------
ZmHOX2a(1)
--------->
TOE1(1)
<---------
YAB1
------>
ZmHOX2a(1)
<---------
ARR11(3)
<------
NtERF2
<---------
ARR14(2)
----
------>
ZmHOX2a(2)
<---------
LBD16
--------->
ARR14(2)
>>>>>>>
======================
HOX2a_HOX2a
<---------
ANAC46
<------
ZmHOX2a(1)
===============
HOX2a_HOX2a
<---------
MYB46(3)
--------->
TOE2(1)
--------->
CCA1(2)
gcacaaggtgatccaatttcttattaggaatggttcgcgcgtcgttcctcgtagccgaatccgaagaaaaatcaacaagtgaagagagatgaggaagaag
18693100
<------
ZmHOX2a(2)
--------->
ARR11(3)
<-----------
ARR10
<---------
ARR14(2)
<---------
ARR11(3)
--------->
LBD16
--------->
At4g35610
<---------
YAB1
--------->
DEAR3(1)
<---------
HSFB2a(2)
-----
--------->
ICU4
------>
NtERF2
--------->
ARR14(2)
--------->
LBD16
<----------
<---------
ZAT14
--------->
ANAC58
<---------
AGP1
--------->
GLK1(2)
--------->
YAB1
-----
--------->
ZAT14
--------->
ANAC46
--------->
ARR14(3)
--------->
HSFB2a(2)
--------->
ARR14(2)
--------->
ZAT18
---------->
DOF2
--------->
ANAC46
<---------
MYB52(1)
--------->
AHL20(2)
------>
DOF2
<---------
ANAC55(2)
<---------
SPL7
------>
ZmHOX2a(2)
<---------
LBD16
<---------
ARR14(2)
>>
TBF1
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
ARR14(3)
<---------
LBD16
<---------
TOE1(2)
aaagagcacaggaataagtaaaagaattcgacgccatccgctacaagatctcatgctccgataatctctccgggaacccat
taatatcgtattttcaacc
18693200
--------->
ALFIN1
--------->
LBD16
<---------
ANAC58
--------->
At4g35610
<---------
ANAC58
<---------
LBD16
----------
=========================
HOX2a_HOX2a
<---------
ANAC46
--------->
DEAR3(1)
<------
NtERF2
----------->
HVH21
------->
GAMYB
--------->
GLK1(2)
----------->
TGA1
------->
GAMYB
--------->
ARR14(2)
<---------
ANAC58
--------->
ANAC58
<---------
ARR14(2)
--------->
ANAC55(2)
--------->
ANAC46
------->
TEIL
<------
ZmHOX2a(1)
<---------
O2
--------->
ANAC58
*
TSS
<---------
LBD16
--------->
LBD16
<---------
ANAC55(2)
---->
TOE1(3)
<------
ZmHOX2a(2)
<------
ZmHOX2a(1)
----------->
RAV1(2)
--------->
ANAC46
-
GT1
--------->
MYB46(3)
--------->
LBD16
----------->
HVH21
<---------
LBD16
<---------
ANAC58
---->
TOE2(3)
============================
HOX2a_HOX2a
<---------
LBD16
--------->
O2
ttcaacgcaatcgccgatc
aaacgaatccgcggaggaggactgactactgaccgcctgaaaaaaactaaaccgggaagaacccaaactacgtgacgttta
18693300
--------->
WOX13(1)
<-----------
TGA1
<---------
bZIP60(1)
--------->
bZIP60(2)
--------->
bZIP60(1)
------>
NtERF2
<---------
RAP2.6(3)
---------->
DOF2
<-----------
HVH21
--------->
YAB1
<---------
ANAC58
<---------
YAB1
--------->
TOE2(3)
<---------
ARR11(3)
<----------
DOF2
------->
TEIL
<
<-----------
HVH21
<---------
ANAC58
--------->
ZAT18
<---------
ANAC55(2)
<-
->
GT1
--------->
ARR11(3)
<---------
ZAT18
--------->
ANAC55(2)
------>
ZmHOX2a(1)
tttgaactgtcatcgaatatcatgccgtctcgtcattcacttatctgagtgggctttataatagaaaggcccagtacataatgtatatcgattcctaagt
18693400
<-----------
TGA1
<-----------
HVH21
<---------
TGA2(1)
--------->
ETT(2)
--------->
bZIP60(1)
--------->
ZAT2
<---------
ANAC58
<---------
At4g35610
<-----------
RAV1(1)
--------->
At4g35610
*
TSS
<---------
ANAC58
<---------
ZAT2
--------->
ANAC55(2)
<---------
bZIP60(1)
<----------
DOF2
------>
ZmHOX2a(1)
<---------
ANAC55(2)
<---------
ETT(2)
--------->
At4g35610
<---------
HSFC1(1)
--------->
ARR14(2)
<-----------
RAV1(1)
<---------
At4g35610
--------->
HSFC1(1)
<---------
ARR14(2)
--------------------->
WRI1
----------->
HVH21
<---------
HSFB2a(2)
<
---------
ANAC46
<---------
ANAC46
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
<---
-----
NtERF2
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
At4g35610
----------->
RAV1(2)
tggcgaata
cata
atgttgctgcgtctctgtcgtcatcgacttcctcttcctctgactttgagcagctctgtcttcttctcgaaatcgtctcctgtttct
18693500
--------->
GLK1(2)
<-----------
ARR10
--------->
ARR11(3)
<---------
ARR11(3)
<---------
AtLEC2
<---------
HSFB2a(2)
----------->
GT1
<----------
DOF2
--------->
HSFC1(1)
<---------
ZAT18
<------
---------
At4g35610
<---------
HSFC1(1)
<---------
ZAT14
-------
------
At4g35610
--------->
HSFB2a(2)
--------->
ZAT14
<---------
YAB1
tctgctttcatggatgcttcaaatcccaattcttctagaaaatctaatgtctcttccttcgctcagtccagtcgaag
gtgaattctaatttttcaaatta
18693600
<-------
---------
<---------
MYB46(3)
<--------
<---------
ANAC46
==========
<------
MYB46(1)
<------
ZmHOX2a(1)
<---------
ANAC58
=============
<------
MYB83
<------
ZmHOX2a(1)
<---------
ANAC58
--------->
ALFIN1
<---------
AtMYB61
<------
ZmHOX2a(1)
----------->
GT1
--------->
MYB46(2)
<---------
MYB46(3)
--------->
DAG2
<---------
TOE1(2)
--------->
MYB111(1)
--------->
MYB55(2)
---------->
DOF2
<-----------
GT1
<---------
MYB46(3)
--------->
ALFIN1
--------
---
ATHB51
<---------
YAB1
<---------
TOE2(3)
<---------
WOX13(1)
================
-->
AHL20(2)
<----------
DOF2
<---------
TOE1(3)
<---------
YAB1
<---------
AtMYB61
<-----
ttcgaaaagtcaaaatcccttttgattttccctcgttttttcatgtaaggtttggtgtttgattttgatggatttag
cggtggtagaggaggaggatatg
18693700
<---------
DEAR3(1)
<---------
MYB46(3)
--------->
ALFIN1
<---------
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
DEAR3(1)
----------->
HVH21
------->
GAMYB
--------->
ETT(2)
--------->
MYB52(1)
<-----------
RAV1(2)
--------->
ATERF1(1)
<---------
DOF5.7(2)
<------
NtERF2
--
GLK1(1)
<---------
LBD16
--------->
MYB52(2)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
>
ARR14(2)
--------->
ETT(2)
<---------
ANAC46
<------
ZmHOX2a(1)
-
ARR14(2)
<---------
ETT(2)
<---------
ANAC58
<---------
ANAC46
================
HOX2a_HOX2a
<---------
ANAC58
<---------
LBD16
================
HOX2a_HOX2a
<---------
MYB46(3)
---------->
DOF2
->
CCA1(2)
----------->
HVH21
<---------
bZIP60(2)
<------
NtERF2
================
HOX2a_HOX2a
--------->
ALFIN1
<------
NtERF2
------->
TEIL
----
YAB1
<------
ZmHOX2a(2)
<-----------
HVH21
--------->
ATERF1(1)
<---------
ZAT18
<----
agagagataacgatcgacggagacctcagggtcgtggcgacggtggaggcggaaaggatagaatcgatgcacttggacgactctt
gtaagtgtaatcgat
18693800
<------
ZmHOX2a(1)
--------->
HSFB2a(2)
<---------
ICU4
----------->
RAV1(1)
<---------
HSFB2a(2)
--------->
YAB1
<---------
KAN4(1)
--------
--------->
ARR14(2)
<---------
ANAC58
----------->
GT1
<---------
ARR14(2)
<-------
<---------
GLK1(2)
<---------
ANAC58
--------->
YAB1
--------->
YAB1
<----------
ID1
--------
--
ZmHOX2a(2)
<---------
ARR11(3)
------->
TEIL
<---------
WOX13(1)
--------->
GLK1(2)
<-------
caatactggattctagatgttagagaattagcttgaattttgaatctataatggattgataatcag
gacgagaatattgcgacatatggctactgagctg
18693900
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AGI:
At2g45320.1
Description:
binding / catalytic. similar to unnamed protein product [Vitis vinifera] (GB:CAO24538.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 18691190
to: 18693219
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g45330.1
Description:
EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2'-phosphotransferase. similar to tRNA 2'phosphotransferase, putative [Arabidopsis thaliana] (TAIR:AT5G23600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24541.1); contains InterPro domain Phosphotransferase KptA/Tpt1; (InterPro:IPR002745)
Range:
from: 18693410
to: 18695109
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.