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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------
AHL20(1)
----->
AHL20(1)
------
AHL20(2)
-----
AHL20(2)
---->
AHL20(2)
---->
YAB1
<---------
HSFB2a(2)
>
AHL20(2)
--------->
HSFB2a(2)
-
AHL20(2)
<-----------
GT1
<---------
WOX13(1)
---------->
DOF2
--------->
AHL20(2)
>
AHL20(1)
--------->
TOE2(3)
<---------
YAB1
<---------
YAB1
<----------
ID1
<---------
AHL20(2)
atattgttttttaaacttaataactaatttctacttgtaattggtttcagaaatactattgattttaaagaacaaactaaattttatatcgaatttttgt
18275500
--------->
ARR11(3)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
RVE1(1)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
<---------
ANAC58
<-----------
TBP
<---------
AHL20(1)
<---------
ANAC58
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(2)
<
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
YAB1
<--
<-----------
GT1
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(1)
<-----
<---------------
AtSPL8
<---------
ATHB12
<---------
AHL20(2)
------>
ZmHOX2a(1)
<xxxxxxxxxx
--------------->
AtSPL8
--------->
AHL20(2)
--------->
AHL20(2)
<---------
MYB59
<---------
TOE2(3)
atacaaaatttgtacaattttattagtttatcaataaattaatatctctctaaattaataaatttcttggtcctaatattattaatttatagaggttttg
18275600
--------->
TCP16(1)
------>
NtERF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
DDF1
<---------
YAB1
<---------
RAP2.6(3)
<---------
AHL20(1)
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<--------
<---------
ETT(1)
----------->
RAV1(1)
------->
TEIL
----------->
GT1
--------->
RAP2.6(2)
--------->
ATHB12
--------->
AHL20(2)
<---------
TOE2(3)
--------->
DREB2C(2)
<---------
AHL20(2)
--------->
AHL20(1)
---------->
DOF2
---------
RAP2.6(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
At4g35610
---------
RAV1(1)
--------->
ANAC46
--------->
ATHB12
------------>
CBF
xxxxxxxxxxxxxxxxxxxx
------
RAV1(1)
----------->
HVH21
<---------
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<x
xxxxxxxxxx
smallRNA(se3)
--------->
At4g35610
<----------
ID1
<---------
AHL20(2)
<---------
At4g35610
ttgtggccgacatgaattcttcgacgcagaagaagcccaaatgatttattagcaacaaaaacaatataatggacccagtatggagctaaagttatattgt
18275700
<---------
ANAC58
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<-----------
RAV1(1)
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ICU4
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<----------
ID1
<---------
ANAC46
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
----------->
TGA1
<-----------
RAV1(1)
<------
ZmHOX2a(1)
---------->
DOF2
<xxx
----------->
HVH21
<-----------
GT1
xxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
AHL20(2)
----
CBF
<------------
CBF
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
YAB1
<---------
AHL20(2)
x>
smallRNA(i2)
<---------
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(i)
<-----------
TBP
-------
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
tcatatgtgacattgtgttgggggttttagcaccttgatacaacgaggaatatgttgcttcactcatcagtttttggagttatttaaagatgacgaaaaa
18275800
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
bZIP60(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
At4g35610
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ICU4
<-----------
HVH21
<---------
YAB1
-
--------->
TGA2(2)
<---------
RAP2.6(3)
--------->
YAB1
<-----------
HVH21
xxxxxxxxxxxxxxxx>
smallRNA(i)
<
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
-
--------->
ANAC58
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
bZIP60(2)
<---------
ANAC46
--------->
At4g35610
<-------
--------->
bZIP60(1)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ANAC58
<----------
DOF2
xxxxxxxxxxxxxxxx>
smallRNA(i)
<-------
xxxxxxxxxxxxxxxx>
smallRNA(i)
<XXXXXXXXXXXXXXXXXXXX
MIR165A/B
--------
<---------
ARR14(2)
------->
TEIL
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
bZIP60(1)
--------
<------
ZmHOX2a(1)
------------>
CBF
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxx
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<-
--->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxx
gagaggatagtagacaaacaaaaacaatggacgtcatccattatgcctctttgtttcttgggg
atgaagccgtctgatgtcaatgcctatgatagagctg
18275900
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------->
DOF2
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxx
---------->
DOF2
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<--------
<------
NtERF2
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
DEAR3(1)
--------->
ANAC58
<------
ZmHOX2a(1)
<--------
-------->
RAP2.6(3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ZAT6
-----
---------
ORA47(1)
---------->
DOF2
<---------
TOE2(3)
xxxxxxxxxxxxxxx
-------->
SPL7
--------->
TOE2(3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--
At4g35610
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--
ZAT2
--------->
At4g35610
===================================
HOX2a_HOX2a
<xxxxxxxxx
->
At4g35610
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
->
ZAT2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ETT(1)
<--------
xxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ANAC46
<--------
-----
ZmHOX2a(1)
--------->
DAG2
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ARR14(2)
xxxx
xxx
smallRNA(fl3)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx
aggacggcgaaagctcaaaaatccagtctcaaaaagagaaaacagatcaaatcgtcaaagcaaaggcccataaggatgtcggaaacactagtttgcctga
18276000
--------->
GLK1(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ARR14(2)
--------->
ARR14(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
GLK1(1)
<---------
GLK1(1)
<------
NtERF2
<---------
RAP2.6(3)
------>
NtERF2
--------->
LBD16
--------->
ATERF1(2)
--------->
RAP2.3(2)
<---------
ATERF1(2)
--------->
RAP2.3(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ANAC58
<---------
At4g35610
--------->
ANAC58
xxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-
ANAC46
--------->
RAP2.6(2)
--------->
ANAC46
<---------
YAB1
-
ANAC58
--------->
ATERF1(1)
--------->
ANAC58
<-------
GAMYB
----->
DOF2
--------->
DEAR3(1)
--------->
WOX13(1)
<---------
MYB46(3)
xxxxxxxxxxxx
xxxxxxxx>
smallRNA(fl3)
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxx
smallRNA(i)
--------->
DOF5.7(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--
-
ANAC58
<---------
LBD16
--------->
At4g35610
<---------
ANAC46
<---------
ANAC46
x
-
AtLEC2
<---------
At4g35610
--------->
ARR11(3)
<---------
ANAC58
<-------
MYC3
<----
xxxxxxxxxxxx>
smallRNA(i)
<---------
At4g35610
<---------
ANAC58
<------
ZmHOX2a(2)
-------
xxxxxxx>
smallRNA(s2)
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------->
MYC3
--------->
ZAT6
aagtccagttgagccggcaaatccgttatctgagatcaagcaagaaccagaaaaacttccttgtggttatgaatggatcacatgcgacttgaacactgat
18276100
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR14(3)
<---------
ARR14(3)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ANAC58
--------->
ALFIN1
--------->
AHL20(1)
<---------
ZAT14
--------->
ANAC58
xxxxxxxxxxx>
smallRNA(i2)
--------->
ANAC46
------->
CCA1(2)
<---------------------
WRI1
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
AHL20(1)
<---------
TOE2(3)
<
-----
YAB1
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---
-->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------------------
WRI1
--------->
MYB46(3)
<-------
TEIL
gatatgtgttcagaggtgtgcaaatttctcaaggaacaatatcttgttgacggacaaaagttcaaggatgctcttcaacaacttgcgctagatgatacat
18276200
--------->
ATHB51
<---------
YAB1
<---------
ICU4
<---------
ICU4
-------->
ATHB1
--------->
YAB1
--------->
ATHB12
<-----
<------
MYB83
<---------
AHL20(2)
<--------
HAHB4
<-----
<------
MYB46(1)
--------->
ICU4
<-----
<---------
AtMYB61
<---------
ANAC58
<----------
DOF2
-------
---------
MYB52(1)
<---------
ANAC58
<----------
DOF2
<-----------
GT1
----------->
GT1
<-
----
TEIL
<---------
YAB1
<---------
DAG2
<---------
AHL20(2)
<------
ZmHOX2a(1)
<-----
tc
gtttggttttattattattttgcttcttctctatatgaactacttttcccatgcgatttttttacttttgaattattag
gaagtgtga
ttttgttact
18276300
------>
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ARR11(3)
<-----------
HVH21
--------->
ARR11(3)
<---------
ANAC46
<---------
WOX13(1)
--------->
ARR11(3)
----
ANAC58
--------->
ATHB51
<---------
ARR11(3)
----
ANAC58
--------->
ICU4
<------
ZmHOX2a(2)
----
ANAC46
--------->
GLK1(2)
<---------
YAB1
<---------
GLK1(1)
-->
MYB52(2)
<---------
AHL20(2)
<---------
REM1(1)
<---------
ARR14(2)
----------
RAV1(1)
--------->
YAB1
--------->
At4g35610
<------
ZmHOX2a(1)
----
ANAC55(1)
--------->
AHL20(2)
--------->
AHL20(2)
------->
TEIL
<---------
REM1(1)
<------
tgtgttgtgtcatatata
aaaaaatcaaaattctataacagaataaaaaataagctaacatgtagctataattgatgaaggatcccctaagctcttatac
18276400
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AGI:
At2g44175.1
Description:
N-myristoyltransferase-related. similar to NMT1 (N-MYRISTOYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G57020.1); similar to N-myristoyl transferase [Brassica oleracea] (GB:AAF19802.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain Myristoyl-CoA:protein N-myristoyltransferase; (InterPro:IPR000903)
Range:
from: 18275864
to: 18276290
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g44180.1
Description:
MAP2A (METHIONINE AMINOPEPTIDASE 2A); methionyl aminopeptidase. Identical to Methionine aminopeptidase 2A (MAP2A) [Arabidopsis Thaliana] (GB:Q9FV49;GB:O80587); similar to MAP2B (METHIONINE AMINOPEPTIDASE 2B), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G59990.2); similar to MAP2B (METHIONINE AMINOPEPTIDASE 2B), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G59990.3); similar to MAP2B (METHIONINE AMINOPEPTIDASE 2B), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G59990.1); similar to hypothetical protein OsI_037943 [Oryza sativa (indica cultivar-group)] (GB:EAY83984.1); similar to methionine aminopeptidase 2
Range:
from: 18276319
to: 18278936
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.