Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->GLK1(1)                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)        <----------ID1                                                    <---------ICU4 -------->LBD16                                                           <---------AHL20(2) ------->LBD16                                                            --------->AHL20(2) --------HSFB2a(2)                                                        <--------ATHB1 -------LBD16                                                             --------->ATHB51 ------LBD16                 --------->MYB46(3)                          <---------ATHB51 ----ARR14(2)             <----------ID1                                 --------->ICU4        <----- --->ARR14(2)        ---------->DOF2   <---------LBD16                   <---------ATHB12 ---------->DOF2   ccgggaaattaagacaaatgtttcaaagagaacaaacatgttctgggttaaactaaaaatcgatactttccaccaataatttaacagaaacccaaagctt  18019900                                   ---------->DOF2                                ----------->RAV1(1)                               <----------ID1                                             --------->At5g28300                             <<<<<<<ZML2                                                 ----------->GT1                        <---------STY1(2)                                               ----------->GT1 -----DOF2              --------->STY1(2)                                          >>>>>>>>>TBF1<----   tctacttcaaatttgtgatttagagtagctagaacaacaaagagaagagtaagtgagagagagagagagagagagagagagagaagaagaagggtaaatt  18020000                                                                           <---------HSFC1(2)                                                                           --------->HSFB2a(1)                                                                           --------->HSFC1(2)       =                                                                      <---------HSFB2a(2)           <                                                                      --------->HSFB2a(2)         <--                                                                     <---------LBD16            -----                                                                     <---------ANAC46           <----                               --------->YAB1                      <---------ARR14(2)      ------>ZmHOX2a(1)               --------->WRKY18(1)                                 --------->ARR14(2)    <---------ZAT18   --------->AtLEC2      <------ZmHOX2a(1)                     <---------ATHB12   <---------YAB1----- -------GT1<------ZmHOX2a(1) --------->GLK1(2)           --------->ANAC46  <---------HSFB2a(1)  <----   actccatggaagaggaggtcaagaagaggagaatcataaacagacttgatttcatctctactccaatcgtttctgggaccttctctgatagtcctctcag  18020100           --------->At4g35610    ----------->HVH21  --------->ZAT2  ====================RAV  <---------ZAT2  ----------->RAV1(2)  <---------At4g35610  --------->At4g35610                                 ----------->HVH21 =====================RAV                            --------->LBD16        <------ZmHOX2a(2) -----------RAV1(2)                                 --------->ANAC46 <---------ZAT2                 - ---------HVH21                                   ------>MYB46(1)    <---------At4g35610         ---- ---->ZAT2 <---------At4g35610                    ------>MYB83       --------->ZAT2            ------ -----ZAT2----------->RAV1(1)                   <---------ALFIN1     --------->At4g35610       ------ ---->At4g35610                                 --------->AtMYB61--------->ANAC58              ------ -----At4g35610--------->ARR11(3)              --------->MYB46(3)--------->ANAC58       <------ZmHOX2a(2)   cttcagctgaagcagcagataatgaagaatagcaagaagcagattgcagaccacccgagacagagggtcgcaactgagatcgaaatacagatcgaacaag  18020200                                                                <------MYB46(1)        ------>ZmHOX2a(2)                                   <---------MYB46(3)       <---------At4g35610                               <------MYB46(1) -------->ATHB12                                         <------MYB83                    <---------ZAT14 ----->YAB1                                >>>>>>>>>TBF1<---------AtMYB61                --------->ZAT14 --->ANAC58                             >>>>>>>>>TBF1 --------->CCA1(2)            <-----------GT1 --->ANAC46                          >>>>>>>>>TBF1 ----------->ARR10           <----------DOF2 --->ANAC58     --------->YAB1---------->DOF2  --------->CCA1(2)<------MYB83<---------ARR11(3)   catcatttgatctgctaatcagaaaatgtggaaaaagaagaagaagaagaaatgagatttggtgtttggtttgtgctagagcttttcactcttcagtgag  18020300                     ------>NtERF2                   <---------ABI4(2)                   --------->ATERF1(1)                  <---------ATERF1(1)                  --------->At4g35610               *TSS<---------MYB55(2)            ---------->DOF2        >>>>>>>>>MYB98       ------>MYB46(1)       ------>MYB83--------->MYB46(3)       --------->MYB52(1)                       <---------PCF2      --------->MYB55(1)                        --------->TCP15(1)     <---------MYB52(2)           <---------LBD16      --------->HSFB2a(2)     <---------MYB46(2)         --------->ARR14(2)   ------>MYB83     <---------MYB59--------->DEAR3(1)   <---------ANAC58              --------->TOE2(3)     --------->AtMYB61<------NtERF2      <---------ANAC46     <---------YAB1     <---------MYB111(1)        <---------ARR14(2)   ------>MYB46(1)   <----------DOF2            ---     <---------MYB111(2) <---------MYB52(1)  --------->ALFIN1--------->ARR11(3)    --------->At5g28300    --------->ANAC46<---------ALFIN1------>NtERF2--------->PCF2    <---------CCA1(2) --------->YAB1    --------->ANAC55(2) <-------GAMYB    <---------ANAC58    <---------ARR11(3)   ----------->GT1 <--    <---------At4g35610 --------------------->WRI1 --------->TOE1(2)<---------ARR11(3)          <----  <-----------GT1--------->RAP2.6(2)--------->LBD16--------->TOE2(2)--------->ARR11(3)      ---------   tgattcacctaacccaaagcagccaccgttggagtttccgccttcgtgtgggacctacgagaatatcatatatctttaactgggctgtaataagcccaat  18020400                                                                            ----------->HVH21                                                                           <-----------HVH21                                                                           --------->LBD16                                                                          --------->O2                                                                          <---------O2                                                                          --------->TGA1a                                                                          <---------ANAC46                                                                          <---------TGA1a                                                                       --------->RAP2.3(2)                                                                       --------->RAP2.3(3)                                                                       --------->RRTF1(3)                                                                       --------->RAP2.6(2)                                                                       --------->DEAR3(1)                                                                      --------->RRTF1(1)                                                                      --------->ERF1                                                                      <------NtERF2                                                                      --------->RAP2.3(1)                                                                      --------->DEAR3(2)                                                                      --------->MYB46(3)                                                                      --------->ORA47(2)                                                                      --------->DEAR4(2)                                                                      <---------ABI4(2)                                                                      --------->ATERF1(1)                                                                      --------->RAP2.6(1)                                                                     <---------At4g35610                                                                     --------->ABI4(2)                                                                     --------->ZAT2                                                                     ------>NtERF2                                                                     <---------RAP2.3(1)                                                                     --------->At4g35610                                                                     <---------ATERF1(1)                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                   <------NtERF2                                                                   --------->ATERF1(1)                                                                  <---------ATERF1(1)                        <---------ICU4         <----------DOF2    --------->LBD16              <---------AHL20(2)               *TSS     ------>ZmHOX2a(1)<------NtERF2  <-----------RAV1(1)  ------------>CBF        =====================================bZIP_DOF <------NtERF2 ------>AHL20(2)       <---------ATHB12     <---------YAB1      <---------LBD16             <-------- -------AHL20(2)  --------->YAB1         <---------MYB52(1)  --------->MYB46(3)            <---------ANAC46 -------TBP  --------->AHL20(2)      ------>NtERF2     --------->TOE1(3)<---------RAP2.6(3)<---------DEAR3(1) --->CBF  <----------DOF2           --------->DEAR3(1) --------->TOE2(3)------>NtERF2     --------->ALFIN1   ttatatgttgggctttttaatagtaatcaattcaaacgacgacgttattctttatttccttaaacagccggagccgccgtgagagagagagagtcggggg  18020500                                                   <-----------HVH21                                                  --------->DEAR3(1)                                                  --------->TGA1a                 <------ZmHOX2a(1)                <---------O2              <------NtERF2                       <---------TGA1a            <---------DEAR3(1)                    --------->O2                               <-------            --------->ALFIN1                      <---------bZIP60(1)               --------->ANAC58            <---------ANAC46                      <---------bZIP60(2)               --------->ANAC46           <------NtERF2                          --------->bZIP60(2)               --------->ANAC58           --------->ATERF1(1)                 --------->ANAC46                    <---------LBD16           <---------LBD16                     ----------->HVH21                 --------->ETT(2)          <---------RAP2.3(1)                --------->ANAC46                --------->HSFC1(2)         <---------DEAR3(1)            --------->ZAT18 <---------CCA1(2)     <---------HSFC1(2)         <---------RAP2.3(2)      ---------->DOF2 --------->bZIP60(1)     <------NtERF2      <-------        --------->At4g35610       ==========================bZIP_DOF     --------->LBD16    <--------   --------->CCA1(2)  --------->MYB52(1)     --------->ANAC58          <---------LBD16 --------->ARR14(2) -LBD16 <---------At4g35610<---------ANAC46  --------->ANAC58        --------->ANAC46  <---------ARR14(2)   agaagaaatgagcggcggaggaaacaacgtcgtgaacaaagtgttctacgcgacgtcgtatcatccgattcaagccggaagtatcgacggaactgatgtt  18020600                <------NtERF2               <---------SPL7               <-----------HVH21               ------>NtERF2              <---------ANAC58              <---------ANAC58                                                             <---------DAG2      --------->YAB1                                      --------->ZAT14                  <---------     <---------YAB1                            <---------ANAC46                         <-----------GT1 <---------ALFIN1--------->SPL7                <---------ANAC58                     <----------DOF2 --REM1(1)    --------->DEAR3(1)               <---------ANAC58                   ------>ZmHOX2a(1) ----RAV1(1)------->GAMYB<---------ARR11(3)  ------>NtERF2--------->ARR14(2) --------->At4g35610 -TOE2(3)--------->MYB52(1)         --------->YAB1    ------->TEIL           <---------At4g35610   <-   gctccacatgataacggcgtccgtcgagctcttctctgttataacgctggcttatgtatgtatactctctcgttctctctgctcctcttttcacttttat  18020700                                                                                      --------->ZAT14                                                                                      <---------ZAT18                                                                                      <---------ZAT14                                                                                 ------>ZmHOX2a(1)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                                                          <---------MYB46(3)--------->GLK1(1)                                                   ===================================HOX2a_HOX2a  <------MYB83                                     ------>ZmHOX2a(1)        <---------GLK1(1)  <------MYB46(1)                <---------MYB46(3)==================================HOX2a_HOX2a   <- <---------AtMYB61              <--------P       ------>ZmHOX2a(2)    <-------GAMYB --------------->AtSPL8 -DOF2                  --------->ATHB12       <---------ARR11(3)    <---------MYB46(3)         <---- --------MYB52(1)  <-------TEIL<-------GAMYB   --------->ARR11(3)    <-----------RAV1(1)--------->ZAT14   cgtttggtttctgaattcaaatacattgatttgggttgttttgaaagatgatccttctggtgattcgaaggctgttggagatccttactgtactctcttc  18020800  Previous    Next  AGI:  At2g43360.1    Description:  BIO2 (BIOTIN AUXOTROPH 2); biotin synthase. Identical to Biotin synthase (BIO2) [Arabidopsis Thaliana] (GB:P54967); similar to biotin synthase [Brassica rapa subsp. pekinensis] (GB:ABI63585.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Biotin synthase; (InterPro:IPR002684); contains InterPro domain Biotin and thiamin synthesis associated; (InterPro:IPR010722); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 18017828    to: 18020315    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43370.1    Description:  U1 small nuclear ribonucleoprotein 70 kDa, putative. similar to U1-70K (SPLICEOSOMAL PROTEIN U1A), RNA binding [Arabidopsis thaliana] (TAIR:AT3G50670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64769.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18020447    to: 18022531    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.