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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
MYB52(1)
<---------
YAB1
<-------
GAMYB
<---------
AHL20(2)
<---------
ALFIN1
--------->
AHL20(1)
<-
-----
ARR14(2)
------->
TEIL
<---------
YAB1
--------->
AHL20(2)
--
---->
ARR14(2)
<---------
ATHB12
--------->
YAB1
<---------
ARR11(3)
<--
tactcatccaaaattccaaatgaatcttccaccgttgataattctattccattgttttcttctgtagaagaccatatattattaagtctctagtccattg
17142400
<---------
TOE2(3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
TOE2(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AHL20(2)
------------------------>
ANAC81
>>>>>>>>>
TBF1
--------->
YAB1
----------->
GT1
>>>>>>>>>
TBF1
--------->
AHL20(2)
<---------
AHL20(2)
------------------------>
ANAC81
--------->
YAB1
<---------
ATHB12
------------------------>
ANAC81
--------->
ANAC58
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
<---------
AHL20(2)
--------------
AGL15
---------->
DOF2
---------->
DOF2
--------->
ANAC58
------->
TEIL
------------->
AGL15
------------------------>
ANAC81
--------->
AHL20(2)
<---------
YAB1
---------------
AGL3
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(2)
--------->
YAB1
<----
tcaataaatggaaatacaaaaaaaaaaaaaaaaaaaaaaagaagaagaagaaaaagacagcatttaatgaacgaaaataatattaatgaatttggaagaa
17142500
----------->
GT1
------>
MYB46(1)
------>
MYB83
--------->
MYB52(1)
--------->
TOE2(2)
--------->
TOE1(2)
<---------
MYB55(2)
<---------
AHL20(2)
--------->
MYB46(3)
--------->
AHL20(2)
<---------
MYB52(2)
--------->
AHL20(1)
--------->
DEAR3(2)
--------->
AHL20(2)
------->
TEIL
<---------
ATHB51
<---------
ZAT18
<-----
--------->
MYB46(3)
--------->
ICU4
--------->
ZAT18
<---------
MYB52(1)
--------->
ANAC58
<---------
AHL20(2)
<------
MYB46(1)
<-------
GAMYB
--------->
ANAC58
------->
GAMYB
<------
MYB83
<---------
ATHB12
--------
<---------
MYB52(2)
--------->
ANAC46
--------->
ATHB12
---------->
DOF2
<---------
At5g28300
-----------
AtSPL8
--------->
MYB52(1)
<---------
REM1(1)
--------->
MYB46(3)
<---------
ZAT14
ggaacgaaccaacgagaaaaatcaacgaaataatttagacaaatgtagcgattggtccactacccatccaaaagtccaaatgaatacttcaccgttgata
17142600
------
--------->
AHL20(2)
-------
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
----------->
GT1
----
YAB1
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
--
->
YAB1
<---------
ARR11(3)
----------->
GT1
<----------
DOF2
--------------
attctattcaattgttttcttctgtagaagaccatatattattaagtctctagtccattgtaaataaatgtttctttcaaataaatggaaatacaaaaaa
17142700
----------->
GT1
<---------
ZAT6
--------->
YAB1
--------->
WOX13(1)
--------------->
AGL15
<---------------
AGL15
------------>
CBF
<---------
ATHB12
--------->
MYB46(3)
--------->
ATHB12
----------------->
AGL3
--------->
YAB1
----------------->
AGL2
--------->
YAB1
--------->
ANAC58
<---------
ICU4
-------->
P
--------->
MYB46(3)
*
TSS
-------->
HAHB4
------>
MYB83
<---------
MYB52(2)
---------
<---------
ATHB12
--------->
ANAC58
------>
NtERF2
<-
---------->
DOF2
--------->
ICU4
------>
MYB46(1)
<------
NtERF2
---------
----------->
GT1
<---------
TOE2(3)
<---------
MYB111(1)
--------->
ATERF1(1)
--
------------------>
ANAC81
<---------
YAB1
--------->
AtMYB61
<---------
ATERF1(1)
=====
--->
DOF2
--------->
AHL20(2)
--------->
DEAR3(2)
<---------
DEAR3(1)
-----
-------->
DOF2
<---------
AHL20(2)
<---------
MYB52(2)
--------->
TOE2(2)
===========
---------->
ANAC81
--------->
AHL20(2)
--------->
MYB46(3)
--------->
TOE1(2)
---------->
DOF2
gaaaagaaaaaaaagacagcatttaatgatgataacgatttggaagaaggaaccaaccaattagagtaacaaaccaaggaggcgactcacatgaaagc
aa
17142800
<---------
bZIP60(2)
<---------
TGA1a
<---------
O2
=====================================
bZIP_DOF
----------->
HVH21
>
ANAC58
--------
At4g35610
>
ANAC58
------->
At4g35610
--------->
AHL20(2)
=============
bZIP_DOF
--------->
AHL20(2)
----->
DOF2
--------->
At5g28300
XXXXXXXXXXXXXXXXXXX
=============
bZIP_DOF
---------->
DOF2
<------
NtERF2
--------->
YAB1
<<<<<<<<
aagctgacatggcagtgaattcagttttataaaaaaggcttcaaggccgagagttcgtagtacaaactcttctctcagtcatcacagaaaataaaaaaca
17142900
<----------
ID1
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
ZAT18
--------->
ARR14(2)
<---------
ZAT18
<---------
ARR14(2)
<---------
ZAT14
<---------
GLK1(1)
<---------
ANAC46
<---------
ANAC46
----------->
RAV1(1)
<---------
At4g35610
=====
>
MIR157D
--------->
ZAT14
--------->
GLK1(1)
<---------
ZAT14
----------->
GT1
-----
<<<<<<<<<
LFY
--------->
MYB52(1)
--------->
ZAT14
--------->
YAB1
<-------
TEIL
=====
atggcgaataagttcactagacaacagatttcagagtttagggaacagttcagcgtatacgacaagaatggtgatg
gtatggttcatcgtctctattcct
17143000
<-
<-
---------->
DOF2
<-
------>
ZmHOX2a(1)
<-
------>
ZmHOX2a(2)
---
<------
ZmHOX2a(2)
---
--------->
ARR11(3)
---
<---------
ARR14(2)
<------
MYB83
<--
--------------->
AtSPL3
--------->
YAB1
<------
MYB46(1)
<---
=====================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<-----------
HVH21
<-----
->
ZmHOX2a(1)
--------->
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR161.2
--------->
ATHB12
<------
ZmHOX2a(1)
======================
HOX2a_HOX2a
--------->
ZAT6
<--------
P
----------->
RAV1(1)
ctaatcgtacatattggatcctgaatcatcttcaaagcactgaaaatgactaacacaagtccttgattacttcttgtag
gtcacattaccacagaggagt
17143100
<---------
ANAC58
----------->
HVH21
<---------
MYB52(1)
<---------
RAP2.6(3)
<---------
ANAC55(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC55(1)
--------->
ANAC55(2)
<---------
ANAC58
<------
NtERF2
------>
NtERF2
<---------
ARR14(2)
--------->
ABI4(2)
--------->
ARR11(3)
--------->
ARR14(2)
--------
ANAC58
<---------
ARR11(3)
--------->
ANAC58
-----
MYB46(1)
==============
HOX2a_HOX2a
<---------
bZIP60(1)
-----
MYB83
<---------
ANAC58
<---------
At4g35610
--------->
ANAC55(2)
--------
ANAC58
--------->
At4g35610
--------->
ARR11(1)
--------->
ANAC58
------>
MYB52(2)
<---------
ZAT2
--------->
GLK1(1)
<---------
ANAC55(2)
------>
MYB46(2)
<---------
At4g35610
<------
ZmHOX2a(2)
----------->
HVH21
------>
MYB59
--------->
ZAT2
<------
ZmHOX2a(1)
----------->
TGA1
-------
DEAR3(1)
----------->
HVH21
<------
ZmHOX2a(1)
--------->
ARR14(2)
------
ZAT14
----------->
RAV1(2)
<-----------
RAV1(2)
<---------
ARR14(2)
--------->
MYB46(3)
----
GLK1(1)
<-----------
GT1
--------->
At4g35610
<---------
ARR14(2)
--------->
bZIP60(1)
tcggtgccgtgatgcgttccctcggtttaaacctgacccaagctgagcttcaggaggagatcaacgattcggatttagatggtgacggaaccatcaattt
17143200
--------->
ZAT18
<
--------->
ANAC46
<---------
GLK1(1)
<---
--------->
ANAC58
<---------
ARR11(3)
----
--------->
ANAC58
---------->
DOF2
----
--------->
ZAT18
--------->
ANAC58
<---
<---------
ZAT18
--------->
ANAC58
<-----
<---------
ANAC58
--------->
ARR11(3)
----------->
HVH21
<--------
<---------
ANAC58
---------->
DOF2
--------->
ARR11(3)
---------
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---------
ARR11(3)
<----------
DOF2
----------->
GT1
-
cactgagttcttgtgcgcaatggctaaggacacttactctgagaaagacctcaagaaagatttcagactctttgacatagacaagaatggtttcatctca
17143300
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AGI:
At2g41090.1
Description:
calmodulin-like calcium-binding protein, 22 kDa (CaBP-22). Identical to 22 kDa calmodulin-like calcium-binding protein [Arabidopsis Thaliana] (GB:P30187); similar to CAM5 (CALMODULIN 5), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin [Aegiceras corniculatum] (GB:ABG74924.1); similar to calmodulin [Aegiceras corniculatum] (GB:AAX31386.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:
from: 17142799
to: 17143930
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.