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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
At4g35610
<---------
At4g35610
<------
NtERF2
----------->
RAV1(1)
--------->
ANAC46
<---------
DEAR3(1)
<---------
LBD16
------>
NtERF2
--------->
TOE1(2)
--------->
At4g35610
<-----------
GT1
<------
MYB46(1)
--------->
TOE2(2)
<---------
At4g35610
--------->
HSFB2a(2)
<------
MYB83
----------->
RAV1(2)
--------->
ARR14(2)
<----------
DOF2
<---------
DAG2
===================
RAV
<---------
ARR14(2)
----------->
RAV1(1)
<---------
GLK1(2)
<--------
P
-----
ICU4
--------->
LBD16
--------->
GLK1(2)
--------->
MYB46(3)
--------->
YAB1
<----------
DOF2
<------
atcacaaac
ctgcgcggcagactgatgagcatctgcatcaattgcagccacagtagcaactcctttcagaatattagccactttctcccatgtaggtgtt
13972100
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
----------->
RAV1(1)
--------->
ANAC46
--------->
TOE1(2)
--------->
AtMYB61
--------->
AtMYB61
=================
RAV
--------->
YAB1
--------->
ZAT6
----------->
RAV1(2)
<---------
ATHB12
<---------
ARR11(3)
--------->
GLK1(2)
<----------
DOF2
---------->
DOF2
------->
TEIL
-----
HVH21
<---------
ALFIN1
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ZAT6
agagctttgcaatgaccacaccatggtgcaaagaactctaccaaaacaactccatttgaattaagaac
ctgcaacaagaaacaagttatcaacactaaca
13972200
----------
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
AGP1
--------->
AGP1
<-----------
ARR10
<---------
ARR11(1)
--------->
YAB1
<---------
ARR14(2)
<---------
ATHB12
--------->
ARR14(2)
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC58
<---------
ARR14(1)
--------->
WOX13(1)
--------->
LBD16
--------->
MYB46(3)
--------->
At4g35610
--------->
YAB1
<---------
At4g35610
--------->
WOX13(1)
--------->
AHL20(2)
<---------
CCA1(2)
<---------
YAB1
<---------
ATHB12
<---------
ATHB12
<---------
LBD16
cagtttcacatcaattctcattttcggtttacccaaacaatcacaacaatcaacaaattggagcaatgaattagcagctaaaccggatctatacagataa
13972300
-
<-
---
---
<---------
TGA1a
=============
<---------
O2
-
--------->
TGA1a
<---------
At4g35610
--------->
At4g35610
--------->
O2
<
<-----------
RAV1(2)
--------->
MYB46(3)
<---------
ZAT2
<--
--------->
At4g35610
<--
---------->
DOF2
---------->
DOF2
<---------
At4g35610
----
--------->
AtMYB61
--------->
TOE1(2)
--------->
ZAT2
<-------
--------->
GLK1(2)
<---------
ALFIN1
<---------
ZAT14
-----------
<---------
GLK1(2)
<---------
CCA1(2)
--------->
ZAT14
-----------
->
GT1
--------->
ARR14(2)
--------->
AtLEC2
======================================
bZIP_DOF
accaatagagattctcagaaacaccaaaagatgaaatcgatgcagagcccatac
cttggacttaaagttagaagcagtgagctgaaccacaggtgacgaa
13972400
--------->
ZAT2
<---------
ZAT2
--------->
ZAT14
--------->
At4g35610
---------->
DOF2
--------------->
AGL15
<---------------
AGL15
---------------->
AGL2
-----
ZmHOX2a(2)
------>
ARR14(2)
------>
ARR11(3)
<---------------------
WRI1
==============
bZIP_DOF
---------------->
AGL3
-------
TEIL
<---------
At4g35610
<-----------
GT1
-------
ARR11(3)
<------
ZmHOX2a(2)
--------->
YAB1
-------
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR832-5P
<---------
DOF5.7(2)
----->
GLK1(1)
<---------
ZAT14
----------->
GT1
--------->
DOF5.7(2)
--
ANAC46
<---------
ZAT14
--------->
GLK1(2)
--------->
TOE1(3)
<------
>
HVH21
--------->
ZAT18
--------->
HSFC1(2)
--------->
TOE2(3)
<<<<<<<<<
TBF1
>
TGA1
--------->
ZAT14
--------->
HSFB2a(1)
--------->
ALFIN1
----------->
GT1
<-----------
GT1
gatccataaagagcactgctgagatcgaagaatccaaaacaaatagtaagaagtgtgagcaacgttaatggtgatttatacat
ttttcttcttccccttt
13972500
<---------
ARR14(2)
--------->
At4g35610
<---------
At4g35610
----------->
RAV1(1)
<------
--------->
At4g35610
<------
======================
HOX2a_HOX2a
<------
----------->
GT1
------>
ZmHOX2a(1)
--------->
TOE2(2)
<------
<---------
HSFB2a(2)
--------->
TOE1(2)
--------->
LBD16
<----------
DOF2
<----------
DOF2
<------
ZmHOX2a(2)
<---------
ANAC46
<----------
DOF2
<-----------
GT1
--------->
ARR14(2)
--------->
ZAT2
-------
<----------
DOF2
--------->
HSFB2a(2)
<---------
ARR14(2)
--------->
ANAC58
----
DOF2
<-----------
GT1
<---------
CCA1(2)
*
TSS
------>
ZmHOX2a(1)
--------->
ANAC58
ctctctttcttttcactttcttctgtaaaattgtatccttttctctctc
gcgatcctgcgaagcagcagatttaagaacacaagctccgtggaattacgt
13972600
<<<<<<<
GRF7
----------->
HVH21
<---------
ARR11(3)
--------->
YAB1
--------->
AHL20(2)
<---------
ATHB12
<---------
ATHB51
--------->
MYB46(3)
--------->
At4g35610
------------>
CBF
--------->
bZIP60(2)
---
ANAC46
<---------
ARR14(2)
----------->
RAV1(2)
---
ANAC55(2)
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ANAC58
<-----
---
ANAC58
--------->
ARR11(3)
<-----------
HVH21
--------->
ANAC58
<-------
GAMYB
---
ANAC58
--------->
ARR14(2)
<---------
REM1(1)
--------->
TOE1(3)
-----------
-->
ANAC55(2)
----------->
RAV1(2)
--------->
ARR11(3)
--------->
TOE2(3)
---------->
DOF2
agtctaaccaataatatcctgacacatcagcataagatgtcgcttcgttttcttttgtaacattaactaggcaagcctctggctcagaaagagggttact
13972700
--------->
HSFB2a(2)
<---------
ANAC58
<-------
TEIL
<---------
ANAC58
<------
MYB83
<------
MYB46(1)
<------
MYB46(1)
--------->
GLK1(1)
<------
MYB83
--------->
MYB111(1)
<---------
TOE2(3)
<---------
MYB46(3)
--------->
MYB59
--------->
ANAC58
<-----------
RAV1(1)
--------->
MYB46(2)
--------->
ANAC58
--------->
ARR11(3)
----
YAB1
<---------
HSFB2a(2)
--------->
REM1(1)
---------->
DOF2
>
GT1
<---------
ANAC46
<---------
MYB52(1)
--------->
At4g35610
<-----------
GT1
----------->
GT1
atttgtgttgggttccaaaaactagttaggttcaacattttctagttgctgcatcaaggaaatcgaatatacagtttgataaagaaatagaaaaatcatg
13972800
<-----------
GT1
--------->
GLK1(2)
<<<<<<<<<
GT-1
--------->
ARR14(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
<---------
ARR14(2)
<------
ZmHOX2a(1)
---------->
ID1
<---------
GLK1(2)
---------->
DOF2
--------->
AHL20(2)
<----------
DOF2
gaacttgatatgttgagaatctgaaaattgtgctaaaggatgtcaagttttattaaccaattcaaaacactgttcttttcctattttgtttcagccattg
13972900
--------->
DAG2
---------->
DOF2
--------->
AHL20(2)
--------------->
AGL15
----------->
GT1
<---------------
AGL15
------------------------>
ANAC81
----------------->
AG
------------------------>
ANAC81
=============================
MADS_MADS
>>>>>>>>>
TBF1
----------------->
AGL3
<-----
------------------------>
ANAC81
<----------
DOF2
<---------------
AGL15
------------------------>
ANAC81
--------->
ANAC58
--------->
AHL20(2)
<------
---------->
DOF2
--------->
ANAC46
--------->
AHL20(1)
-------
--------->
ANAC46
---------->
DOF2
--------->
ANAC58
<---------
AHL20(2)
<------
NtERF2
ctgtctccgaaaccaaagaagaagaaaaaaaaaaaaaaaaaaagatagaacatttccaagccctctttccaaaaaaattaacaaaaagggcagagagatc
13973000
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AGI:
At2g32920.1
Description:
ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase. similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to protein disulfide isomerase family [Glycine max] (GB:BAF95902.1); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain (InterPro:IPR013766)
Range:
from: 13969395
to: 13972549
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.