Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC58                                                                     <-----------RAV1(1)                                                         --------->CCA1(2)    --------->ANAC55(1)                                                         --------->ARR14(1)   --------->ANAC55(2)                                                        --------->ARR11(1)    --------->ANAC46   <---                                             --------->YAB1  --------->DOF5.7(2)     <-----------GT1                                            <---------YAB1<-------TEIL        <---------ANAC55(2)<---                                          <---------------AGL15  <---------YAB1     <---------AHL20(2)          --------->AHL20(2)           --------->ANAC58 --------->ARR14(2)    --------->ANAC58<------          <---------AHL20(2)         ---------->DOF2  ----------->ARR10      ------->TEIL   <-------- <---------ANAC58            <---------AHL20(2)       <---------TOE2(3)    <---------ZAT18 --------->YAB1 <---------ANAC58         ------->TEIL --------->ANAC58 <---------ARR14(2) --------->ZAT18<---------YAB1 ------At4g35610<-----------GT1  --------->YAB1       <---------YAB1<---------YAB1  --------->AHL20(2)   gttgcttcatatttttttatactatatgtatataatgagaaaagctattataggttaagatacgtttactattgttgtgcacgtaattaactattatcac  12696300         <-----------HVH21         ------>NtERF2         ----------->RAV1(1)        --------->ANAC46                                                                            <        --------->DEAR3(1)                         ---------->DOF2                                  -        --------->ANAC58                         --------->DOF5.7(2)                                -        --------->ANAC58                         <---------MYB52(1)                                 <       --------->MYB46(3)                       --------->At5g28300                          ------>NtERF2   <-----------GT1                      --------->CCA1(2)                                  <---------RAP2.3(2)  <-----------GT1                      --------->ARR14(2) <----------DOF2           --------->YAB1 <- -------DOF2                           <---------ARR14(2)<XXXXXXXXXXXXXXXXXXXXXMIR402  ---------->DOF2 ------DAG2       ----------->GT1----------->GT1<-------GAMYB          <---------AHL20(2)  <---------RAP2.6(2) -----GT1--------->LBD16   --------->At5g28300 ----------->GT1      ----------->GT1 --------->TOE2(3) ---GT1<---------LBD16    ----------->GT1      <---------MYB46(3)  ----------->GT1  --------->TOE1(3)   tttttttcccccgccagagatggtaatgtggtaaatggtcatatatgggccgttaaagggctttaataggcgttaaattgttcaaaccataatgcggccc  12696400                                                    --------->RAP2.3(1)                                                    <------NtERF2                                                   <---------ORA47(2)                                                   ------>NtERF2                                                   <---------RAP2.3(1)                                                   <---------DEAR4(2)                                                   <---------ERF1           ---------->DOF2                         <---------ATERF1(1)         ------>NtERF2                            <---------ATERF1(2)         --------->LBD16                          --------->ATERF1(2)        <---------ANAC46                          <---------RAP2.3(2)                            ----       <---------LBD16                            <---------RAP2.3(3)               <---------MYB52(1)      <---------At5g28300                         <---------DEAR3(1)               --------->LBD16 <---------AHL20(2)                              --------->SPL7                   --------->ANAC58 ---------AHL20(1)                <---------At4g35610        --------->GLK1(2)    --------->ANAC58 -------->YAB1                    --------->At4g35610----------->GT1              --------->ANAC46 -------->AHL20(2)  ----------->GT1              --------->ATERF1(1)             <---------LBD16 <--- ---------AHL20(2)  <---------MYB46(3)           <---------ABI4(1)              >>>>>>>>>>E2Fb  <---- --------ATHB12   <---------MYB52(1)            <---------ATERF1(1)   >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>E2Fb   aataaaattgccgcgaagccgatggtttaaaacggtagccgaagaaaaccgggcggcgaaaaaattctgttccattgctatttcccgctacttccatttt  12696500                                                                                                   --                                        <---------CCA1(2)                                         ---         <-----------GT1            <-----------GT1                                             -----   <----------DOF2                 <<<<<<<<<<GT-3b                                              <---- ------>ID1                    <---------AHL20(2)                        <---------GLK1(2)      <---- --------GT1<----------DOF2    --------->AHL20(2)                    <------------CBF          <----- -------GT1 <---------DAG2    --------->AHL20(2)     ------>ZmHOX2a(1)<---------WOX13(1)   <---------   tccctctttgtttactttttttttttttttcatttatttttcttatctcattttcctcttaaaaaccatgagattgattcttcacttcgattccattgga  12696600                              <----------DOF2                             <----------DOF2                             <---------DAG2                           --------->LBD16                           ------>NtERF2                          --------->ANAC58                          --------->ANAC58                *TSS              ------->TEIL                          --------->ANAC46              ------>MYB46(1)   <---------SPL7    --------->TOE2(3)    <---------LBD16                ------------>CBF  --------->LBD16 ---------->CBF       =============================HOX2a_HOX2a            ----------->HVH21 --->ZmHOX2a(2)       ------>ZmHOX2a(2)         --------->YAB1           --------->DEAR3(1) ---->ARR11(3)       <---------GLK1(1)         <---------YAB1         ------->GAMYB -----ARR11(3)      --------->ARR14(2)      ------>ZmHOX2a(1) <---------ANAC58    <---------ARR11(3) -----AGP1          <---------ARR11(3)   ------>NtERF2  ------>MYB83 --------->MYB46(3) ----CCA1(2)    ===================================HOX2a_HOX2a<---------ANAC58<---------MYB59 ---CBF         ------>ZmHOX2a(2) <-----------GT1     --------->TOE1(2) <---------LBD16   tctcaatctcaacatcgatctcgatctcccgccttttttctgcctccttctgataacctacaatgcctgcaatcgccggacctagttcttcccctcagaa  12696700                 ------>ZmHOX2a(2)                                                           --------               --------->ARR14(2)                                                           <--------               <---------AGP1                                                              <---------LBD16               <---------ARR14(2)                                                          <---------At4g35610            <---------HSFB2a(2)          ------>ZmHOX2a(2)                                 --------->At4g35610            >>>>>>>ZML2                 <------ZmHOX2a(2)                                  <------NtERF2            <---------HSFC1(1)          --------->ARR14(1)                                <---------ERF1            --------->HSFB2a(2)         --------->CCA1(2)                                <---------DEAR3(1)            --------->HSFC1(1)         --------->AGP1                                   --------->At4g35610       <---------MYB46(3)              --------->ARR14(2)          --------->ANAC58     <---------At4g35610       <---------DEAR3(2)              <---------ARR14(2)          --------->ANAC58     <---------ZAT2      <---------DEAR3(1)               --------->ARR11(3)        --------->MYB52(1)   <---------RAP2.6(2)      <---------TOE2(2)              ----------->ARR10      <---------HSFB2a(2)     --------->ARR14(2)      <---------TOE1(2)          --------->ALFIN1     <---------ALFIN1        --------->ARR14(2)     <------NtERF2            <---------DEAR3(1)      --------->ZAT6          <---------ARR14(2)   <---------ANAC58      --------->MYB52(1)  --------->DEAR3(1) <---------ARR14(2) --------->ARR14(2)   --------->ETT(2)      <---------ARR14(2)------>NtERF2    <---------LBD16  <---------GLK1(1) <-----   <---------ANAC46      --------->GLK1(2) --------->At4g35610  --------->ARR14(2) <---------ARR14(2)   <---------ANAC58      --------->ARR14(2)--------->LBD16  --------->HSFB2a(2)    <---------GLK1(2) <-----------HVH21     <XXXXXXXXXXXXXXXXXXXXMIR782 <---------WRKY38(1)       --------->GLK1(1) <-----   acatgtcgtcggttctagatcggagagtatcggaggtgttagatccgccgaagtcaacacttctcggaaacggaagttgatatccgattcggctgcggag  12696800                  <---------ANAC58                  <---------ANAC58                  <---------ANAC46             <-----------RAV1(1)          <---------AtMYB61       <---------DEAR3(1)    ----------->HVH21    --------->DEAR3(1)                                                                              <   <---------At4g35610                                                                           <---   --------->At4g35610   <---------ARR14(2)                                                  <------- ->LBD16  <---------DEAR3(1)                                                                 -------- -ANAC46  --------->ALFIN1           --------->REM1(1)                                      --------- ----AtMYB61 --------->ALFIN1   --------->ARR11(3)          --------->O2               --------->ARR11(3) ----TOE2(2) <---------REM1(1)  <---------ARR11(3)  <---------GLK1(1)                  <---------ARR11(3)   gtttcagcgacggtggtgttgcctgtgaattcgatatctacaccgatgaaatggaaatcgcctcgtcgatgtgctgtttcaatccctaagacctctgatg  12696900                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                             <-------   --------->At4g35610                                                                      ---------   <---------At4g35610                                                   --------->ATHB12 <------ZmHOX2a(1) --------P                                                           <---------AGP1     <---------TOE2(3) ------TOE2(3)               <------MYB83                     >>>>>>>>>ARR2      <------ZmHOX2a(1) --At4g35610                 <------MYB46(1)                <---------AHL20(2)<-----------RAV1(2) ->At4g35610        --------->AHL20(2)                      <---------YAB1 <---------WOX13(1)<------- -->HVH21           <---------AHL20(2)               --------->GLK1(2)  <---------YAB1  <---------TOE1(3)   aggtaagctccttgttcttagtttaattgtttggtttagtttattcgagtgagagaatcaatttgattgtagttctgattgcaggagattaaggaagatt  12697000          ----------->GT1      --------->DAG2 --->GLK1(2) ---ARR11(3)                  <---------MYB52(1) ---ARR14(2)             <---------ARR11(3) ---GLK1(2)              --------->ARR11(3) -->ARR14(2)            --------->GLK1(1)                     ---------->DOF2 ->HSFC1(2)    --------->GLK1(2)                           --------->TOE1(3) ->HSFB2a(1)   --------->ARR14(2)                    --------->ALFIN1                      <---------GLK1(2) --HSFC1(2)    <---------ARR14(2)       ----------->GT1    --------->TOE2(3)             <---------YAB1 -->ARR10----------->GT1<---------GLK1(1)        ---------->DOF2                     <----------DOF2 --HSFB2a(1)  --------->GLK1(1)        <---------TOE2(3)--------->TCP20 ------->TEIL <---------DAG2   ctaatgaaaaattggaaaatccagtgatatctgtttgtttagaggttaaatcaaagtggaaccctaaaggtatgtatatatgatgagctttttgattctc  12697100                        <---------WOX13(1)                      --------->ATHB12                     <---------YAB1       <---------ARR14(2)              <------ZmHOX2a(1)        --               >>>>>>>>>ARR2         <---------AtLEC2            <---------ZAT2                    --              --------->ATHB12 ------->TEIL--------->CCA1(2)     --------->At4g35610              <--             <---------YAB1    --------->ARR11(3)                <---------At4g35610    ------->TEIL<         --------->MYB52(2)   <---------CCA1(2)<---------At4g35610   ----------->HVH21 <---------CCA1(2)       <---------MYB52(1)  <---------TOE2(3)<-------TEIL      ---------->DOF2<------NtERF2   --------   atgctcttagttagtttgattgtatgattgatgtatcttgaatggatacagatgatgaacaaatgaaagctgtgaaggaggcattacatgtatctaaggc  12697200  Previous    Next  AGI:  At2g29679.1    Description:  unknown protein Range:  from: 12696353    to: 12696475    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g29680.1    Description:  CDC6. similar to cell division control protein CDC6b, putative (CDC6b) [Arabidopsis thaliana] (TAIR:AT1G07270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21489.1); contains InterPro domain Cell division control, Cdc6 (InterPro:IPR016314); contains InterPro domain CDC6, C terminal (InterPro:IPR015163) Range:  from: 12696658    to: 12699949    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.