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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-
---
---
---
----
<----
<----
<----
<---------
MYB52(1)
<----------
DOF2
<----
------
ARR11(3)
<----------
DOF2
<----
----->
ARR11(3)
<---------
AHL20(1)
------
-----
CCA1(2)
--------->
ARR11(3)
------
-
AHL20(2)
--------->
AtLEC2
<---------
ARR11(3)
------
>
AHL20(2)
<---------
MYB52(1)
----------->
GT1
------
atctatctgttattctcagttttgttcttcatgaaaactcaattgcatattgtaatatctttcttttttttgttttctgttttgccttcaacttcacacc
11829400
<-----------
GT1
<---------
AHL20(2)
<---------
AHL20(1)
-------->
YAB1
<---------
ARR11(1)
--->
MYB83
<-----------
ARR10
--->
MYB46(1)
--------->
ARR14(2)
------>
MYB52(1)
<---------
ARR14(2)
----->
MYB55(1)
------->
TEIL
-----
MYB59
<---------
ARR14(1)
-----
MYB111(2)
<---------
CCA1(2)
-----
MYB46(2)
<---------
ANAC55(2)
-----
MYB52(2)
--------->
ANAC46
<---------
ATHB12
-----
MYB111(1)
--------->
ANAC55(2)
------>
MYB83
<--------
--->
ANAC58
--------->
ANAC55(1)
------>
MYB46(1)
--->
ANAC46
<<<<<<<<<
GATA-1
<---------
AHL20(2)
--------->
YAB1
--->
ANAC55(1)
<---------
DAG2
---------->
ID1
<---------
MYB59
--->
ANAC58
<----------
DOF2
<----------
DOF2
------------------------>
ANAC81
taacatattttttctaaatctaatccatacatttccctactttatctatacgtatctttgtcttatttatagattgagaaccaaacaatgagaataacat
11829500
------>
MYB46(1)
--------->
PCF2
------>
MYB83
<----------
DOF2
--------->
ANAC46
<---------
ARR11(3)
<---------
YAB1
--------->
ARR11(3)
-------->
P
--------->
YAB1
--------->
ANAC58
-------->
P
<---------------
--------->
At4g35610
--------->
AtMYB61
------>
MYB83
<-----------
GT1
<---------
At4g35610
--------->
MYB46(3)
<-----------
GT1
------>
MYB46(1)
<
---
GT1
--------->
YAB1
--------->
ANAC58
--------->
AHL20(2)
--------->
TOE1(2)
<---------
ALFIN1
tttagctacctatttataatacaccaactcaagaaaattgttgtattaccaattcaatataaacatgttaacctacaagaccttttagccccacttggta
11829600
<---------
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
MYB46(3)
------->
TEIL
---------->
ID1
<---------
ARR11(3)
<-----------
GT1
------>
MYB46(1)
--
AG
<-----------
GT1
<----------
DOF2
<---------
AHL20(2)
<---------
YAB1
----------
DOF2
<-----------
GT1
------>
MYB83
--------->
AtLEC2
<-----------
GT1
ttctttttttactatatgtttttcctttctatgaaccaacttaatatatttcatacaaaattagtttctgattcaaattttgccctactaagtctctaaa
11829700
<---------
WRKY18(1)
--------->
WRKY38(1)
--------->
WRKY12
<-------
GAMYB
<---------
MYB46(3)
<---------
YAB1
<---------
AtMYB61
---------->
ID1
--------->
ATHB12
<---------
AHL20(2)
<---------
WOX13(1)
<---------
YAB1
<---------
YAB1
<---------
YAB1
--------->
ALFIN1
<----------
DOF2
----------->
GT1
taagtttagaatatgtttaatcagggatagtgtggttgactgagagggcatttttgtcattatacatcggtaacaagtcttgataggctcttaaggccag
11829800
===============================
HOX2a_HOX2a
<------
ZmHOX2a(1)
-
=============
HOX2a_HOX2a
--
--------->
At4g35610
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR14(3)
--------->
ARR11(3)
<---------
ARR11(3)
<-----------
RAV1(1)
--------->
ARR14(2)
--------->
AGP1
--------->
GLK1(1)
<---------
AGP1
<---------
ARR14(3)
--------->
At4g35610
--------->
GLK1(2)
--------->
ARR11(3)
<---------
At4g35610
<-----------
ARR10
<---------
AGP1
--------->
ANAC58
=====================
HOX2a_HOX2a
<---------
ARR14(2)
--------->
ANAC58
<------
ZmHOX2a(1)
================================
HOX2a_HOX2a
<-----------
GT1
<----------
DOF2
======================
HOX2a_HOX2a
--------->
ANAC58
*
TSS
--------->
ANAC46
<---------
At4g35610
<------
ZmHOX2a(1)
--------->
ANAC58
<-----------
TBP
<---------
DAG2
<---------
TOE2(3)
------>
ZmHOX2a(2)
--------->
ANAC58
--
----------->
GT1
<---------
GLK1(1)
----------->
GT1
---------->
DOF2
--------->
ANAC58
<-
tcttgggt
tatataacaaggcatctcccttttggtgctcatgtaaattgaggaagagaaaaaggatctgaggaaca
atggctacgacaagacagatcttg
11829900
<---------
AHL20(2)
------->
GAMYB
--------->
RAP2.6(2)
--------->
TOE2(3)
---------->
DOF2
----------->
RAV1(1)
<---------
LBD16
--------->
ATHB12
--------->
RAP2.3(3)
<---------
LBD16
<---------
ATHB12
-------->
ATERF1(1)
--------->
ARR11(3)
--------->
ATHB12
<---------
WOX13(1)
<---------
------->
At4g35610
<---------
ARR11(3)
<---------
YAB1
<---------
YAB1
--------->
At4g35610
------->
ZAT2
--------->
AHL20(2)
--------->
ZAT2
<---------
AtLEC2
<---------
TOE1(2)
<------
ZmHOX2a(1)
--------
At4g35610
------->
TEIL
--------->
LBD16
------>
ZmHOX2a(1)
--------->
ALFIN1
gagcagccacaatcgccatttattcaacgtatcaagagctcggggaacattagcatgaatggcagtcctatgattgatgagaaagaagaggagctttcac
11830000
--------->
LBD16
--------->
HSFB2a(2)
<---------------
AtSPL8
<--
<---------
ARR14(2)
---
<---------
TOE1(3)
<------
ZmHOX2a(1)
<--
<---------
TOE2(3)
<---------
TOE2(3)
----
<----------
DOF2
<------
ZmHOX2a(1)
--------->
ARR14(2)
----
<---------
ANAC58
--------->
At4g35610
<---------
MYB46(3)
---------->
DOF2
<-----
<----------
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
<---------
TOE1(3)
--------->
DAG2
<-------
-
DOF2
<---------
ANAC58
<---------
At4g35610
<---------
TOE2(3)
<---------
HSFB2a(2)
<----------
CDC5
agtctgcttttgctttgtttaaggcaaaggaagatgagattgagaggaggaagatggaggttaaggatagggtccagaaaaagcttggactcgctgagga
11830100
<---------
HSFB2a(2)
<-------
TEIL
<------
MYB83
--------->
ARR14(1)
--------->
HSFB2a(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
LBD16
<---------
YAB1
-------
At4g35610
--------->
CCA1(2)
<-----------
GT1
------>
HSFC1(2)
--------->
GLK1(2)
<---------
ARR11(3)
-------
HSFC1(2)
<---------
ARR14(2)
<-----------
GT1
--------->
ARR11(3)
----->
ANAC58
--------->
ARR14(2)
----------->
GT1
<---------
GLK1(2)
----->
ANAC58
--------->
ARR11(1)
<---------
ANAC46
----------->
ARR10
--------
-
ZmHOX2a(1)
<---------
GLK1(2)
<------
MYB46(1)
<---------
ARR11(3)
<--------
--
TOE2(3)
----------->
ARR10
--------->
MYB59
--------->
ARR11(3)
<---------
AtMYB61
agctactagaagattagccgagattcgggaa
gtaagtttggtttgtaacattttcaagaacttgaacaaagattttcattttgagagagttttggtttgt
11830200
---------->
DOF2
<------
ZmHOX2a(1)
<----------
ID1
--------->
LBD16
--------->
ARR14(2)
--------->
YAB1
<---------
LBD16
<---------
ATHB12
--------->
ANAC46
<------
ZmHOX2a(2)
--------->
GLK1(1)
<---------
ARR11(3)
<---------
ARR11(3)
===========================
HOX2a_HOX2a
<---------
ARR14(2)
<------
ZmHOX2a(1)
=====================================
HOX2a_HOX2a
--------->
ANAC58
<---------
LBD16
<---------
ARR14(2)
--------->
CCA1(2)
--------->
ANAC58
<-----------
RAV1(2)
--------->
ARR14(2)
<---------
GLK1(1)
------->
GAMYB
<-------
------->
AtSPL8
--------->
ARR11(3)
--------->
ARR11(3)
<---------
At5g28300
-
ANAC46
<-----------
ARR10
---------->
DOF2
<---------
TOE2(3)
--------->
MYB52(1)
<--
acattttcag
gagcttgaagctcttaccgatccaatgagaaaagagatatccgcgataaggaaaagagtcgatgctattaaccgagaactcaagccttta
11830300
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AGI:
At2g27740.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO16676.1); contains InterPro domain Protein of unknown function DUF662 (InterPro:IPR007033)
Range:
from: 11829809
to: 11830809
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.