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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----
<-----------
HVH21
------
------>
ZmHOX2a(2)
<------
<---------
At4g35610
-------
<---------
GLK1(1)
<-------
--------->
ARR11(3)
<-----------
ARR10
<---------
AGP1
------>
NtERF2
==================
HOX2a_HOX2a
------>
ZmHOX2a(2)
--------
<------
ZmHOX2a(1)
<---------
ANAC46
<---------
YAB1
--------->
DEAR3(1)
<------
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ANAC46
<---------
ATERF1(1)
==========================
HOX2a_HOX2a
--------->
ICU4
<------
ZmHOX2a(1)
<-------
<---------
HSFB2a(2)
<---------
ARR14(2)
<-----------
GT1
<---------
ZAT6
<---------
DEAR3(1)
cttgtgagtttgagaaggagaagaggacgtttggatctgcgtcgtagagttttactcttgtgatgtttagtgatcgaaggagcacggcgactcttgccgg
11760700
<--------
P
<-------
GAMYB
<------
MYB83
<---------
MYB46(3)
<------
MYB46(1)
<---
<---------
AtMYB61
----
--
NtERF2
<----
--->
LBD16
--------
---
ANAC46
<---------
ANAC58
--------->
ANAC46
-->
ETT(1)
<---------
ANAC58
--------->
AHL20(2)
--------->
ANAC58
--
LBD16
<---------
MYB46(3)
<----------
DOF2
--------->
ANAC58
--------->
AGL1
<---------
ALFIN1
<---------
ALFIN1
----------
AGL1
<----------
DOF2
<---------
ALFIN1
<---------
REM1(2)
--------->
ANAC46
agatgggaggttgtttgctatttggccgtagttgattcccacaccttgccctttaattctct
ctacatagaacaaaaaaaaaaacacacacccaattaga
11760800
--------->
TOE2(2)
--------->
TOE1(2)
----------->
RAV1(2)
<---------
GLK1(1)
<------
ZmHOX2a(1)
<---------
REM1(1)
<------
ZmHOX2a(1)
<---------
GLK1(1)
--------
ARR10
--------->
ALFIN1
--------->
ARR11(3)
----->
GLK1(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
>>>>>>>>
-----
GLK1(2)
--------->
ALFIN1
---------->
DOF2
<---------
ARR11(3)
->
YAB1
<-----------
GT1
<------
ZmHOX2a(1)
----------->
GT1
<------
ZmHOX2a(1)
<-
atctaagttgaagcaaatttacatgctcaaaacaaatattgaaggaggaggaggaaac
ctgagagagtaagaaagaggaggagaagaactctgaagaaga
11760900
<---------
O2
--------->
O2
--------->
ANAC46
--------->
GLK1(2)
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ARR14(2)
<---------
ALFIN1
---------->
ID1
<---------
GLK1(2)
<---------
At4g35610
<-----------
GT1
--------->
ANAC58
--------->
bZIP60(1)
<----------
DOF2
--------->
ALFIN1
<-----------
ARR10
<---------
MYB52(1)
---------->
ID1
>
TBF1
<-----------
RAV1(1)
------>
ZmHOX2a(1)
<-----------
GT1
<----------
DOF2
-----
ZmHOX2a(1)
--------->
ANAC58
<---------
bZIP60(1)
<------------------------
ANAC81
aggagagactatgtgtggccat
ggcaagaatctccttctacgacgtcgtttttttagctcctcttcttctttttcttttttccttttgagttttagtttt
11761000
--------->
SPL7
<-------
TEIL
--------->
LBD16
<---------
LBD16
<----------
DOF2
<---------
DEAR3(1)
<---------
ANAC58
--------->
CCA1(2)
<---------
ANAC58
--------->
CCA1(2)
--------->
MYB52(2)
-----
<---------
ARR11(3)
<----------
DOF2
<---------
ANAC58
-------
--------->
AHL20(1)
<---------
At4g35610
<---------
ANAC58
<--------
<---------
TOE2(3)
<-----------
GT1
<---------
MYB52(1)
-------->
P
tggtattaagaatatataagagacggtggaatttggaaagtttcaactgttctttcttcgtttcttgctttccgcgttcgtcaaatagctctaaccaggt
11761100
<-----------------
AGL3
<-----------------
AGL1
<-----------------
AGL2
<-----------------
AG
<-----------
GT1
*
TSS
---------->
ID1
<---------
ICU4
<---------
AHL20(1)
<----------
DOF2
<---------
YAB1
--------->
ANAC55(2)
----------------->
AGL1
---->
ALFIN1
--------->
ARR14(2)
<---------
ANAC55(2)
----------------->
AGL2
-->
ZAT2
<---------
ARR14(2)
<-------
TEIL
--------->
AHL20(2)
--------------->
AGL15
---
RAV1(2)
<----------
TaMYB80
------>
ZmHOX2a(1)
<---------
AHL20(2)
<---------------
AGL15
gtctct
cattaatgcatatacctatgcctaaacttatattcctatattacatacattacatattttatttgtttttttcttccttttttggtatcaagtt
11761200
---------->
DOF2
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
ANAC58
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ANAC58
--------->
YAB1
----------->
GT1
--------->
ANAC46
--------->
GLK1(2)
<---------
WOX13(1)
<---------
AHL20(2)
<---------------
AtSPL8
--------->
ARR14(2)
--------->
ATHB12
<------
ZmHOX2a(1)
<----------
DOF2
>>>>>>>>>>
GT-3b
<---------
ARR14(2)
--------->
YAB1
--------->
ATHB12
tgacatatttcttttttggtacaagaaaaataaataaagagaatccaataagaagataacccaatagtaattggtaattcattaggaattttttttctaa
11761300
-
--
--
--------->
AHL20(2)
--
<---------
AHL20(2)
<---------
AHL20(2)
--
--------->
AHL20(2)
--------->
AHL20(2)
-------
--------->
AHL20(2)
<------
ZmHOX2a(2)
<----------
DOF2
<------
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
-------
--------->
DAG2
--------->
GLK1(2)
<---------
ATHB12
<---------
DAG2
<------
---------->
DOF2
<---------
GLK1(2)
<-----------
GT1
<---------
TOE2(3)
<XXXXXXXXXXXXXXXXXXXX
MIR1887
caaaaaagtttttaatctagaatctatttattttttttttttcaatcgatcatttaatgaaataaaaactttttttttttttggatgtttacttagtaca
11761400
----------->
GT1
--------->
SPL7
<---------
MYB52(1)
-
-------->
LBD16
<--
------->
ANAC58
---
------->
ANAC58
----------->
GT1
--------->
AHL20(2)
<----------
------->
ANAC55(1)
<---------
YAB1
--------->
CCA1(2)
-----------
------->
ANAC46
<-----------
GT1
<---------
ARR11(3)
------------
-->
ZAT18
<---------
ETT(2)
<---------
YAB1
================================================
---
ZAT18
>>>>>>>>>>
AtTINY2
<---------
AHL20(2)
--------->
YAB1
------------
-->
ZAT14
--------->
ETT(2)
<---------
AHL20(1)
<---------
YAB1
<----------
DOF2
-------
---
ZAT14
--------->
MYB52(1)
<---------
YAB1
--------------->
AGL15
<---------
DAG2
--------
cccgtaagtcgttaaactatcgacatcgagttttactattatttttggttataaacttattatagatataaaataatgtgctttatcaattgcctaaaag
11761500
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
---------->
GT1
<------
MYB46(1)
-------
ZAT14
<------
MYB83
------>
ZAT14
<---------
ANAC46
-----
AGL15
<---------
ANAC58
---->
AGL15
<---------
ANAC58
----->
AGL1
<----------
DOF2
<---------
ARR14(2)
=====
MADS_MADS
<-----------
GT1
<-----------
GT1
--------->
AHL20(2)
----->
AG
<---------
YAB1
<---------
At4g35610
--------->
ARR14(2)
------->
TEIL
-->
DAG2
--------->
ARR11(3)
<----------
DOF2
--------->
MYB52(1)
<---------
AHL20(2)
--
-->
DOF2
<---------
YAB1
<---------
DAG2
--------->
At4g35610
------->
TEIL
<----------
DOF2
------
tgtagttaaatatgtatgattttgattttactttatgccctttacagctcaactatatataacgaatttggctggtttctttaaattacatgtatgttaa
11761600
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AGI:
At2g27500.1
Description:
glycosyl hydrolase family 17 protein. Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to unknown [Populus trichocarpa] (GB:ABK94377.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)
Range:
from: 11759248
to: 11761106
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.