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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
RAV1(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
-
--------->
AGP1
-
--------->
ARR11(3)
-
<---------
ARR11(3)
--
--------->
ARR14(2)
----------->
RAV1(1)
--
--------->
YAB1
<---------
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR415
--
----------->
GT1
<---------
AGP1
<----------
ID1
----
<---------
YAB1
<<<<<<<<<<<<<<<<<
LFY
<---------
MYB46(3)
--------->
GLK1(2)
----
-------------->
AGL15
----------->
HVH21
------->
TEIL
--------->
ARR11(3)
<-----
---->
MYB46(3)
--------->
ANAC46
<---------
CCA1(2)
<---------
ARR11(3)
<-----------
GT1
cactatgaatagtaatatactccaatggactcac
agatctgttgttgaatcttcacaaaaat
ctaaaacaacaaaaacaaaacattgtttttttcagtac
11415000
<-----------
RAV1(1)
------>
NtERF2
-------->
ANAC58
-------->
ANAC58
-------->
ANAC46
------->
SPL7
---->
MYB83
---->
MYB46(1)
--
----->
TOE1(2)
<---------
AHL20(2)
------->
TEIL
--
----->
TOE2(2)
--------->
YAB1
------->
GAMYB
<---------
AHL20(2)
<---------
WOX13(1)
<---
------
ARR10
<<<<<<<<<<<<<<<<<
LFY
--------->
AHL20(2)
---------->
DOF2
<---
ctacgccaatgttggaaataacaatggattcaacacacatttaaaaacattttatagctacagagataaagaattgatggatgtcaaaaccctagattac
11415100
-------->
P
------->
GAMYB
--------->
MYB46(3)
<---------
MYB52(2)
<---------
MYB111(2)
--------->
At4g35610
---------->
DOF2
<---------
MYB46(2)
---->
MYB46(1)
<---------
MYB111(1)
-
---->
MYB83
--------->
MYB52(1)
----------------->
AGL1
--------
------
MYB59
<---------
MYB55(2)
---------->
DOF2
---------->
DOF2
<---------
ARR11(3)
------
MYB46(2)
--------->
MYB46(3)
----------->
GT1
--------->
CCA1(2)
--------->
ARR11(3)
caaacaaaagagctaacaacaactacccatataccaatttagtaacaaatttcaaagaagatagaaattgaaagtcaaattttaagaacttgaaatcgaa
11415200
--------->
ARR11(3)
<---------
GLK1(2)
<---------
ARR11(3)
--------->
ANAC58
--------->
ANAC58
--------->
YAB1
<---------
ARR14(2)
--------->
ARR14(2)
--------->
YAB1
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ICU4
<------
NtERF2
----------->
RAV1(2)
-------->
YAB1
--------->
ICU4
<-----------
HVH21
<----------
ID1
<---------
At4g35610
--->
GT1
<---------
ATHB12
<---------
DEAR3(1)
---------->
DOF2
--------->
At4g35610
<------
ZmHOX2a(2)
aatcagaacacaaaatactgcaataatcacgaacaacgtcggagattttcaagagaacaaagctaaacacttctcac
ctgaatccgattaatggatcaga
11415300
<------
MYB83
--------->
MYB59
--------->
ARR14(1)
--------->
CCA1(2)
--------->
ARR11(1)
--------->
ARR14(2)
<---------
ZAT14
<---------
ARR14(2)
--------->
HSFB2a(2)
--------->
ARR11(3)
<---------
HSFB2a(2)
<---------
ARR11(3)
--------->
DAG2
<---------
DEAR3(1)
>>>>>>>>>
TBF1
<------
ZmHOX2a(1)
<---------------------
WRI1
----------->
ARR10
----------->
GT1
<------
ZmHOX2a(2)
<------
NtERF2
>>>>>>>>>
TBF1
<------
MYB46(1)
---------->
DOF2
caaatgttttgagttgagatcgaatttgagaaggtcgtcgagaacagagaaggaagaagaagaagatttggtctgaggagaaggcaaaaagtgaagtttg
11415400
<---------
AtMYB61
<----------
DOF2
<---------
ANAC46
--------->
At5g28300
<---------
ANAC46
---------->
ID1
---------->
DOF2
<---------
ANAC58
<----------
DOF2
<----------
DOF2
----------->
GT1
<---------
ANAC58
---------->
ID1
<-----
<---------
ICU4
--------->
ANAC58
<---------
RAP2.6(2)
<-----------
GT1
------
--------->
ICU4
--------->
ANAC58
<-----------
RAV1(1)
<------------------------
ANAC81
--------->
ANAC58
--------->
DAG2
<------------
CBF
<----------
DOF2
<----------
DOF2
*
TSS
--------->
ANAC58
---------->
DOF2
<---------
AHL20(2)
<<<<<<<<<
TAC1
<-----------
GT1
agag
agtcgtaagcattagctttactaaaaagcaaagaccgtgaaaaaattgtggctttggtggaaacactgtcttttttctttttttctttttttttta
11415500
<-----------
RAV1(1)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<-----------
RAV1(1)
--------->
AHL20(2)
--------->
ALFIN1
----------->
GT1
<---------
ANAC58
--------->
ANAC55(2)
--------->
ALFIN1
<---------
TOE2(3)
<---------
ANAC58
<---------
MYB46(3)
--------->
MYB59
<---------
MYB46(3)
<-------
GAMYB
<---------
TOE1(3)
<--------
P
<---------
SPL7
--------------->
AGL15
<-------
GAMYB
<-----------
HVH21
<---------------
AGL15
<---------
MYB52(1)
--------->
ETT(1)
<-----------------
AGL2
--------->
LBD16
<-----------
RAV1(1)
----
AHL20(2)
<-----------------
AG
<---------
LBD16
<---------
At4g35610
--->
AHL20(2)
<-----------------
AGL1
<-----------
GT1
<---------
ANAC46
<-----------
RAV1(1)
atttagttttgtttaaaagtttttctggtttaggtaataaattgttgcataattttcaactccggttgatgtgtgtcgctgtcggactgttgttgtctga
11415600
<---------
ANAC55(1)
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
--------->
ARR14(2)
<---------
ANAC46
<---------
AHL20(2)
------
--------->
ANAC55(2)
--------->
GLK1(2)
--------
<---------
ANAC55(2)
<---------
ARR11(3)
<-------
----------->
HVH21
--------->
ARR11(3)
--------->
YAB1
--------->
WRKY18(1)
--------->
ANAC58
--------->
ANAC58
<-----------
HVH21
------->
GAMYB
<---------
YAB1
--------->
ANAC58
---
--------->
ZAT14
<---------
MYB52(1)
--------->
ANAC58
---------->
DOF2
<-----
<---------
ICU4
<---------
LBD16
<-----------
GT1
<----------
DOF2
---------->
DOF2
---------
aacttaaaaatcacagagcggtcacgggttctgtttcgtgtttaactgccacgatattctttttaattgttttttaaaagggaaagtaatcaaaatgatg
11415700
<---------
ANAC46
<---------
ANAC58
<------
MYB46(1)
<------
MYB83
<---------
ANAC46
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
--------->
YAB1
<---------
ANAC58
---------->
DOF2
--------->
WRKY18(1)
--->
bZIP60(1)
--------->
MYB111(1)
<---------------
AGL15
<---------------
AGL15
<
->
YAB1
<---------
AtMYB61
======================================
MADS_MADS
<----
--
ICU4
<---------
MYB46(3)
<-----------------
AG
--------------->
AGL15
<----
------>
ZAT6
<---------
ANAC46
<---------
ARR11(3)
<------
MYB83
<----------
DOF2
<---------
AHL20(2)
----
bZIP60(1)
--------->
MYB46(2)
<----------
DOF2
<------
MYB46(1)
<-----------
HVH21
<-------
>
ICU4
<---------
MYB46(3)
--------->
ARR11(3)
--------->
MYB59
<---------
DAG2
<---------
AHL20(2)
acactaataagagtggtttggtgtgaaacttagacctttcttacacaaatttggtaaagccaaaactttttttggtcatggggatttatttttttttact
11415800
<---------
AHL20(2)
--------->
AHL20(1)
--------->
LBD16
<---------
AHL20(1)
<---------
ANAC46
--------->
AHL20(2)
<---------
LBD16
--------->
ANAC58
xxxxxxxxxxxxxxxx
<---------
ANAC55(2)
--------->
TOE2(3)
--------->
ANAC58
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
<---------
AHL20(2)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------
AHL20(2)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
------
DOF2
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxx
-----
DAG2
--------->
ICU4
--------->
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
NtERF2
----
GT1
--------->
YAB1
<---------
GLK1(2)
----------->
GT1
<---------
ANAC55(2)
ttttatttttttttttgtcataaagaaattatagaatcttgttgtgaaagacgtaaaatataatgcccaaacaaaaaaaacgtaaattggcggataaact
11415900
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AGI:
At2g26770.1
Description:
plectin-related. similar to 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] (TAIR:AT2G40820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18229.1)
Range:
from: 11411144
to: 11415404
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.