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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------->
MYC2
------->
MYC3
<-------
MYC3
<-----------
HVH21
<-------
MYC2
--------->
TGA1a
<---------
O2
--------->
ARR14(2)
<---------
ANAC55(2)
<---------
ARR14(2)
--------->
ANAC46
<------
MYB83
----------->
ARR10
--------->
O2
<------
MYB46(1)
<---------
LBD16
---------->
DOF2
--------->
ANAC55(2)
---------
ANAC46
===================================
bZIP_DOF
---------
YAB1
--------->
TOE2(3)
<---------
TGA1a
--------->
MYB59
-
------
MYB52(1)
--------->
YAB1
--------->
ZAT6
<---------
MYB52(1)
<
ttgtgtttggggaagaaccgttctaatcttattccctaaagtcttaaaaacactaaattacacgtgagagacctgtttggttatcgggtgagagaaaaat
11142400
<
-
-
<------
MYB83
<
<------
MYB46(1)
<
--------->
ANAC46
<---------
AHL20(2)
<
--------->
ALFIN1
<---------
ARR11(3)
<--------
ATHB1
<-
<-------
PIF5
--------->
ARR14(2)
--------->
ATHB51
<-
------->
PIF5
--------->
ANAC58
<---------
ICU4
<-
--------->
At4g35610
--------->
CCA1(2)
<---------
ATHB12
<-
--------->
ZAT2
--------->
ANAC46
<---------
ATHB51
<-
<-----------
RAV1(2)
<---------
ARR14(2)
--------->
ICU4
<-
<---------
At4g35610
--------->
ARR11(3)
------------>
CBF
--
<---------
ZAT2
--------->
ANAC58
<------
NtERF2
--------->
ANAC58
<-
----------->
RAV1(1)
*
TSS
--------->
MYB59
<-------
TEIL
--------->
ANAC58
---
-------->
ZAT18
--------->
ANAC58
<---------
DEAR3(1)
--------->
ANAC46
<----
---------
ZAT18
--------->
ANAC58
<-----------
HVH21
--------->
KAN4(2)
<----------
DOF2
tgtgcagcaggtggagacacgca
cgagatatgtaggtcgcctcttaagtacataaatacccttggacatacccaataattcattttagtaggctttttct
11142500
---------->
DOF2
--------->
AHL20(2)
--------->
TOE2(3)
<---------
ALFIN1
----------->
RAV1(1)
<---------
PCF5
--------->
PCF2
------>
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
<------
NtERF2
-----------
TCP11(1)
-------->
RAP2.6(2)
----->
NtERF2
---------
ATERF1(1)
---------
ERF1
---------
RAP2.3(1)
--------
ANAC58
--------
RAP2.3(3)
--------
RAP2.6(2)
--------
ATERF1(2)
--------
ANAC58
------
--------
DEAR3(1)
--------->
AHL20(2)
<------
------->
ATERF1(2)
<<<<<<<
ZML2
<---------
AHL20(2)
--------
RAP2.3(2)
<---------
HSFB2a(2)
--------->
AHL20(2)
------>
RAP2.6(3)
--------->
HSFB2a(2)
--------->
TOE2(3)
<---------
YAB1
---------->
DOF2
-------
RAV1(1)
<------
ZmHOX2a(1)
<------
NtERF2
---------->
DOF2
<---------
AHL20(2)
ggcggcccacattaaaaagaaggacctagaacataaattggcatcgttagaaatgggcttaagtaaaggcccatatgatatatatataaaaaaagagatt
11142600
------->
MYC3
<-------
PIF4
------->
PIF4
<-------
MYC2
<-------
MYC3
------->
MYC2
------->
MYC4
<-------
MYC4
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
TGA1a
--------->
bZIP60(2)
=============================
bZIP_DOF
--------->
O2
<---------
O2
--------->
TGA1a
------>
NtERF2
<---------
ANAC58
------->
PIF5
<---------
HSFB2a(2)
<---------
ALFIN1
--------->
HSFC1(1)
<------------
OsbHLH66
<---------
HSFC1(1)
<------
NtERF2
--------->
HSFB2a(2)
------>
NtERF2
<---------
ZAT14
<---------
LBD16
<-----------------
PIF3(1)
--------->
ZAT14
--------->
GLK1(2)
--------->
ETT(2)
--------->
ZAT14
--------->
HSFC1(2)
---------->
ARF1
------------>
CBF
------>
ZmHOX2a(2)
<---------
HSFB2a(1)
---------->
ID1
<---------
HSFC1(2)
<---------
ARR11(3)
--------->
MYB52(1)
<---------
ANAC58
<-------
PIF5
--------->
HSFC1(2)
--------->
ARR11(3)
--->
GLK1(2)
--------->
HSFB2a(1)
<---------
ANAC58
---------->
DOF2
----------->
GT1
<------
---
GLK1(2)
<---------
HSFC1(2)
<---------
ANAC58
<-----------
HVH21
<---------
ZAT14
<------
ctagattagtaacgaagtttctggaacattgtcttgtcttgtcgccacgtgctcacataaatgtcaaagaagcttcaatacagtgaaatgatcttgtctt
11142700
<---------
HSFC1(2)
--------->
HSFC1(2)
*
TSS
--------->
HSFB2a(1)
------>
NtERF2
<---------
HSFB2a(1)
<---------
ALFIN1
<<<<<<<
ZML2
--------->
ANAC58
<---------
HSFC1(1)
--------->
ANAC46
--------->
HSFB2a(2)
--------->
ANAC58
<---------
HSFB2a(2)
<---------
ALFIN1
--------->
HSFC1(1)
<-----------
GT1
------------>
CBF
---
ANAC58
<---------
ICU4
------>
ZmHOX2a(1)
---
ANAC58
<---------
YAB1
--------->
ANAC46
---------->
DOF2
gtctctagaaccttctcttctctccccttataatttcatttctctctcctccacgcctc
aatctctcaactcaaaactcaacattttctgaagaaagtcg
11142800
<-------
TEIL
--------->
ANAC58
<---------
HSFB2a(2)
----------->
RAV1(1)
--------->
HSFB2a(2)
--------------->
AGL15
<---------
HSFC1(1)
<---------------
AGL15
--------->
HSFC1(1)
----------------->
AGL3
<----------
DOF2
--------->
ANAC58
----------------->
AGL2
--------->
ARR11(3)
--------->
ANAC55(2)
--------->
ANAC46
<----------
ID1
<---------
ARR11(3)
<---------
ANAC55(2)
<-------
<----------
DOF2
<-----------------
AGL2
--------->
CCA1(1)
<-----------
GT1
<---------
ANAC58
<---------
DAG2
<-----------------
AGL3
--------->
RVE1(1)
---------->
DOF2
<---------
ANAC58
caaactttacccaaaacccagtttctaattttagcaacaaaatcaaaaatatctacttttgtttctcgaaagttacgaaattcatacaatctagcttatc
11142900
--------->
DOF5.7(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
----------->
HVH21
----------->
TGA1
--
--------->
MYB52(1)
<-
------->
GAMYB
--------->
ARR14(2)
<---------
RAP2.6(2)
<---------
At4g35610
--------->
MYB52(1)
---------->
DOF2
<---------
ARR14(2)
<---------
At4g35610
--
CCA1(2)
<---------
TOE2(3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<-----------
RAV1(1)
tctgagcttatggatttgagataaacaacgaaa
atggaagaactgaaagtggaaatggaggaagaaacggtgacgtttactggttctgtagcggcttctt
11143000
-
<
--
--
<-
<---
----
<------
ZmHOX2a(2)
-------
<---------
HSFB2a(2)
-------
------>
ZmHOX2a(1)
--------
------>
ZmHOX2a(1)
--------
===============
HOX2a_HOX2a
<-------
====================
HOX2a_HOX2a
<---------
ARR14(2)
--------
------>
ZmHOX2a(2)
<---------
ALFIN1
<-------
<------
ZmHOX2a(2)
--------->
AtMYB61
<-------
=====================
HOX2a_HOX2a
--------->
DEAR3(1)
--------
================
HOX2a_HOX2a
<---------
ABI4(2)
<--------
--------->
ARR14(2)
--------->
MYB46(3)
<--------
--------->
ARR11(3)
<---------
MYB55(2)
--------->
ANAC58
-----
<---------
ARR11(3)
------>
NtERF2
--------->
ANAC55(2)
---
<---------
ARR14(2)
--------->
ANAC46
--------->
ARR14(2)
---------
<------
ZmHOX2a(1)
--------->
MYB52(1)
<---------
PCF5
--------->
ANAC46
<-----
------->
At4g35610
--------->
HSFB2a(2)
--------->
MYB52(1)
<---------
MYB52(1)
----------
--------
At4g35610
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ATERF1(1)
--------->
ANAC58
------
catctgtaggatcctcttcctctcctagaccaatggaagggcttaacgaaacagggccaccaccgtttctgactaagacttacgaaatggtggaagatcc
11143100
--------->
ARR14(2)
<---------
ARR14(2)
----------->
HVH21
<------
NtERF2
--------->
ATERF1(1)
----->
NtERF2
---------
ATERF1(1)
------->
DEAR3(1)
--------->
HVH21
--------
DEAR3(1)
------
ATERF1(1)
----->
LBD16
-->
ARR14(1)
-->
CCA1(2)
->
ARR11(1)
->
ARR14(3)
--
ARR14(3)
->
ARR14(2)
--
ARR11(3)
<---------
ICU4
--
ARR14(2)
--------->
YAB1
------
->
ARR11(3)
<---------
ARR14(2)
<---------
MYB52(1)
-
HSFB2a(1)
<---------
AtMYB61
--------->
ARR14(2)
--------->
O2
-
HSFC1(2)
<---------
ANAC58
<---------
GLK1(2)
--------->
ANAC58
---->
TOE1(2)
<---------
ANAC58
--------->
ALFIN1
--------->
ANAC58
------>
ATERF1(1)
<---------
ANAC46
<---------
ANAC58
--------->
ANAC46
>
HSFB2a(1)
--------->
MYB55(2)
<---------
ANAC58
--------->
bZIP60(2)
----
LBD16
<---------
MYB46(3)
<---------
ANAC46
<---------
ALFIN1
->
ARR10
<---------
AtMYB61
--------->
ALFIN1
------>
ZmHOX2a(1)
----
>
ZmHOX2a(2)
--------->
ABI4(2)
<----------
DOF2
<---------
YAB1
--------->
MYB46(3)
------
ggcgacggacacggtggtttcttggagtaatggtcgtaacagctttgtggtgtgggattctcataagttctcaacaactctccttccacgttacttcaag
11143200
<---------
CCA1(2)
------>
ZmHOX2a(1)
<---------
ANAC58
--------->
ZAT2
<---------
ANAC58
<---------
At4g35610
<----------
DOF2
--------->
At4g35610
------->
TEIL
--------->
TOE2(3)
<---------
ZAT2
--------------->
AtSPL3
--->
ANAC58
<---------
MYB52(1)
--------------->
AtSPL8
----->
YAB1
<-----------
TGA1
<---------------
AtSPL8
<---------
ARR11(3)
--->
ANAC58
<-----------
HVH21
<---------------
AtSPL3
--------->
ARR11(3)
----
catagcaatttctcaagttttattcgtcagctcaatacttat
gtaagtacctctttgcttccttatatctacttagtcttgtttctgtttttgtttctaa
11143300
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AGI:
At2g26140.1
Description:
FTSH4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase. similar to FTSH11 (FtsH protease 11), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G53170.1); similar to ftsH-like protease [Pisum sativum] (GB:CAG25608.1); similar to putative FtsH protease [Lycopersicon esculentum] (GB:AAP32310.1); similar to hypothetical protein OsI_002481 [Oryza sativa (indica cultivar-group)] (GB:EAY74634.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain Peptidase M41; (InterPro:IPR000642);
Range:
from: 11138656
to: 11142423
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g26150.1
Description:
ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor. Identical to Heat stress transcription factor A-2 (HSFA2) [Arabidopsis Thaliana] (GB:O80982); similar to AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G22830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43809.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:
from: 11142760
to: 11144474
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.