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Chromosome 1
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Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
<---------
ICU4
--------->
YAB1
<---------
ATHB12
<---------
ATHB12
--------->
ANAC58
--------->
ANAC58
-
--------->
WOX13(1)
-
<---------
YAB1
<---------
At4g35610
--------->
MYB46(3)
<---------
At4g35610
--------->
ICU4
--------->
At4g35610
<---------
MYB52(2)
--
tctagctcatagacttgtacatgattcagagttgacataatcaacttagaactactcagcaatcaataatcaacaaagaaactaacttgaaaccatcaaa
10672600
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
<---------
ATHB12
------>
MYB83
<---------
ARR11(3)
------->
MYC3
------->
TEIL
--------->
GLK1(2)
<-------
MYC3
<---------
ZAT18
<---------
GLK1(2)
------>
ZmHOX2a(1)
--------->
WRKY12
--------->
YAB1
<-----------
ARR10
<---------
At5g28300
--------->
YAB1
<---------
ATHB12
<---------
ARR11(3)
--------->
ATHB12
------>
MYB46(1)
<---------
ATHB12
----->
MYB46(1)
--------->
ARR14(2)
<---------
YAB1
<---------
MYB59
<---------------
AtSPL3
----->
MYB83
--------->
ARR11(3)
<---------
AtLEC2
----------------->
AGL1
<---------------
AtSPL8
------->
WOX13(1)
<---------
CCA1(2)
--------->
ALFIN1
--------->
ALFIN1
--------->
At4g35610
<-----
ccaatcagaatcttacacaatctaatatcttcctcataaacgtgtgcatgattcacagtggacctaatcaagaaagaagctaacttgtacgaatcataat
10672700
--------->
DAG2
---------->
DOF2
<----------
DOF2
--------->
YAB1
------>
ZmHOX2a(1)
<---------
ATHB12
-------->
ZAP1
----
ARR11(3)
<---------
WOX13(1)
--------->
AGP1
--------->
WOX13(1)
----------->
HVH21
cttacacaatccttttctcttaaactgatagacttaatcaactcagaactacttagcacatcaatcaacaaaaagggttttgaatcgatttgacctagat
10672800
<---------
ARR14(2)
<---------
TOE2(3)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
TOE1(3)
<---------
CCA1(2)
<---------
ARR14(2)
<---------
RVE1(1)
--------->
ANAC55(2)
>>>>>>>>>>
WRKY63
<-------
TEIL
<---------
YAB1
--------->
ANAC58
----------->
GT1
<-----------
GT1
--------->
CCA1(2)
----------->
HVH21
<---------
MYB52(2)
<---------
ARR14(2)
------>
ZmHOX2a(2)
---------->
DOF2
--------->
ANAC58
--------->
REM1(2)
------
--------->
ARR14(2)
----------->
GT1
<---------
ARR11(3)
--------->
GLK1(2)
<---------
LBD16
-------
gcgaatatttgactatttggatcggaaaaagattcagatattaaagttatgacagaagaagctagcaacttac
atatctgggtagagaaatgaacaaaaa
10672900
--------->
GLK1(2)
------>
MYB83
------>
MYB46(1)
=================================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
==================================
HOX2a_HOX2a
<---------
ALFIN1
--------->
AGP1
<---------
GLK1(2)
--------->
MYB46(3)
<---------
ARR14(3)
<---------
MYB55(2)
<---------
ARR14(2)
------>
MYB83
--------->
ARR14(3)
-------->
P
<----
--------->
ARR14(2)
---------->
DOF2
------>
MYB46(1)
<---------
ARR11(3)
<---------
LBD16
<---------
MYB111(1)
<----------
DOF2
<---------
MYB59
======================
HOX2a_HOX2a
--------->
AtMYB61
--->
DAG2
--------->
ARR11(3)
<------
ZmHOX2a(1)
------>
NtERF2
--------->
DEAR3(2)
--->
DOF2
<---------
GLK1(1)
<---------
LBD16
------>
ZmHOX2a(2)
--------->
MYB46(3)
ggaagagcctttagagatcttcaagaccaaattctggagtttaggagaagaaacttgatcggggacgagaaaaggaacagaaccaaccacttgaaatcac
10673000
<------
ZmHOX2a(1)
<----------
ID1
--------->
ARR14(2)
------->
TEIL
<---------
ARR14(2)
<---------
HSFB2a(2)
--------------->
AtSPL8
--------->
HSFB2a(2)
<---------------
AtSPL8
*
TSS
--------->
LBD16
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
DAG2
<------------
CBF
===============================
HOX2a_HOX2a
---------->
DOF2
<---------
AHL20(2)
<--
===================================
HOX2a_HOX2a
<---------
AHL20(2)
<--------
<------
ZmHOX2a(2)
--------->
YAB1
----------->
GT1
<---------
AHL20(2)
---------->
DOF2
---
-----
ANAC55(2)
<<<<<<<<<
ARR2
---------->
DOF2
<----------
DOF2
<---------
TOE1(1)
-------
ttgagatcagatgtatgtacaatcaaatcctaaggacaaaaga
taaaaaaagtgtgttctttttatttattgttttgtccgagaaaagaaaactattaaa
10673100
<---------
DAG2
<---------
ZAT2
<-----------
GT1
<---------
ANAC55(2)
<---------
At4g35610
<----------
DOF2
<---------
ANAC58
--------->
At4g35610
-------
ARR11(3)
<---------
DAG2
<-----------
GT1
<----------
DOF2
-
YAB1
<----------
DOF2
<---------
ANAC58
<---------
MYB59
<---------
ICU4
------>
ARR11(3)
<----------
DOF2
--------->
ANAC55(2)
--------->
ICU4
<----------
DOF2
--->
DOF2
<-----------
GT1
----------->
GT1
<---------
ANAC46
---------->
DOF2
<-----
ggtctttacttttttcaaaactttttcttgttaataacttacttaactaaaacttgagatgtgtaatctttacagctgtttaaagctttctctgattcgt
10673200
<---------
YAB1
<----------
DOF2
<-----------
TGA1
<---------
ARR14(2)
<---------
ANAC46
--------->
ARR14(2)
<---------
MYB52(1)
<---------
TOE2(3)
<-----------
GT1
<---------------
AGL15
<----------
DOF2
--------->
YAB1
<---------
HSFB2a(2)
<---------
ANAC46
<---------
ETT(2)
------
TGA1
--------->
GLK1(2)
----------->
GT1
--------->
AHL20(2)
--------------->
AGL15
-
catcacagctttaagaatgtgtgtaatcgtcattgtaaacagcaaaattacagaagaatttaactagttgtgtatttgctatatgtagaccattagtatt
10673300
<------
ZmHOX2a(1)
----------->
GT1
----------->
GT1
<------
MYB46(1)
----------->
GT1
<--------
P
---------->
DOF2
<---------
TOE2(3)
<----------
DOF2
<---------
MYB46(3)
<---------
YAB1
<---------
At4g35610
<---------
MYB52(1)
<---------
YAB1
--------->
At4g35610
<-------
GAMYB
--------->
AHL20(1)
---------->
DOF2
<------
MYB83
--------->
ID1
<---------
MYB46(3)
<---------
AHL20(2)
----------->
GT1
----------
ttgtcatcttaactttcatataaactggttttgtcgttggctaaaagtatattaaaaattttaaacagaaaaagagtattatggtaggataaattgcaaa
10673400
<---------
GLK1(1)
--------->
ATHB12
<---------
YAB1
<---
<-----------
GT1
--------->
YAB1
<-------
<-----------
GT1
<---------
AHL20(2)
<-------
TEIL
<--------
->
GT1
<---------
TOE2(3)
----------->
RAV1(2)
<---------
YAB1
<-------
TEIL
<---------
ATHB12
aacaaattaacatatgctagtttttacctggcatttaacaaaatttatgatttctgtttttatatcgaacatacatagtttcatgatacaatcaattttt
10673500
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AGI:
At2g25070.1
Description:
protein phosphatase 2C, putative / PP2C, putative. similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44355.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045); contains InterPro domain Protein phosphatase 2C, manganese/magnesium aspartate binding site; (InterPro:IPR000222)
Range:
from: 10670319
to: 10673043
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.