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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-------
-------
-------
<--------
---------
--------->
MYB46(3)
<----------
DOF2
<---------
YAB1
--------->
ZAT14
<---------
TOE2(3)
>
ZmHOX2a(1)
--------->
ZAT6
<---------
ZAT14
<---------
TOE1(3)
---
MYB59
--------->
YAB1
<---------
TOE2(3)
<----------
DOF2
<-----------
GT1
acttaacattctaataaacataacacttatataggttgaactacacttggtatttgatatttgtagttgtaattttcttttagggttctttgaaccactc
9817300
<---------
TOE2(3)
<---------
ZAT14
---------->
DOF2
----------->
HVH21
--------->
AHL20(2)
------>
ZmHOX2a(2)
-
<---------
AHL20(2)
<---------
GLK1(1)
--
-->
ANAC46
--------->
AHL20(2)
<------
ZmHOX2a(2)
---
-->
ANAC58
<---------
AHL20(2)
----------->
GT1
--------->
ARR11(3)
<-----
-->
ANAC58
--------->
ATHB12
----------->
GT1
<---------
ARR11(3)
--------
-
ALFIN1
--------->
TOE2(3)
--------->
DAG2
--------->
HSFB2a(2)
<----------
DOF2
>
AtMYB61
------>
ZmHOX2a(2)
---------->
DOF2
<---------
HSFB2a(2)
<---------
YAB1
cacgattttgatccttgattaaattttaaagtatgttgaaaagtagaaaatatgtgtatcgagaaacgatctctgacttctctgatgttatgctttcact
9817400
---------->
DOF2
--------->
ANAC58
<---------
YAB1
--------->
ANAC58
<----------
DOF2
<---------
TOE2(3)
<---------
At5g28300
-
------>
GAMYB
--------->
ARR11(1)
--------->
AHL20(2)
<---------
YAB1
<------
------->
MYB46(3)
<---------
ARR11(3)
------>
ZmHOX2a(1)
--------->
GLK1(2)
<-------
TEIL
----->
P
<---------
HSFB2a(2)
<---------
MYB52(1)
<---------
ARR11(3)
<------
ZmHOX2a(1)
<
----
MYB52(2)
---------->
DOF2
---------->
ID1
--------->
ANAC58
<-----------
RAV1(2)
<
->
ZAT6
--------->
HSFB2a(2)
--------->
CCA1(2)
<----------
DOF2
--------->
ANAC58
--------->
LBD16
<------
aaccatctttatagaaaacatacaaaaagatttgattcgttttgtcctttgaataaatgttaccaagaaattctgattaccgcaggaaagatgcaacttt
9817500
<------
ZmHOX2a(1)
--------->
DAG2
---------->
DOF2
------->
GAMYB
<-------
TEIL
<----------
ID1
--------------->
AGL15
----------->
GT1
-------->
ARR14(2)
<-----------
GT1
<---------------
AGL15
---------------
---
DAG2
--------->
YAB1
----------------->
AGL3
--------->
ANAC58
---------
ARR14(2)
>>>>>>>>>
MYB98
--------->
MYB46(3)
--------->
ANAC58
---------
GLK1(2)
<-----------
GT1
--------->
ANAC58
<-------
MYC3
---------->
DOF2
----
DOF2
<---------
AHL20(2)
--------->
ANAC58
------->
MYC3
------------------
tggattcgggtttatattttaacataacaaatttacaacacaatgggcaaccaaaaagaggagttcatgtgccaagcacttagaaaaaaagaaaaaaaaa
9817600
<---------
MYB46(3)
<-------
GAMYB
<-----------
RAV1(1)
<------
MYB46(1)
<---------
ANAC58
<---------
ANAC46
<------
MYB83
<---------
ANAC58
--------->
MYB55(2)
<---------
MYB46(3)
<---------
DEAR3(1)
--------->
MYB111(2)
<---------
ANAC46
--------->
MYB52(2)
<---------
MYB46(3)
<---------
AtMYB61
--------->
MYB111(1)
--------->
MYB46(2)
--------->
MYB111(2)
--------->
ALFIN1
--------->
MYB55(2)
<---------
MYB46(3)
<---------
ANAC46
<---------
DEAR3(1)
--------->
ALFIN1
<---------
MYB55(1)
<---------
AHL20(2)
<---------
ANAC58
<--------
P
--------->
ALFIN1
--------->
AHL20(1)
<---------
ANAC58
<---------
ANAC58
<------
MYB83
<---------
AHL20(1)
--------->
ANAC81
<---------
ANAC58
<------
MYB46(1)
<---------
AHL20(2)
------>
ANAC81
<---------
MYB46(3)
<---------
MYB46(3)
------->
TEIL
--------->
AHL20(2)
aaaaaaacaagcgtggtgtttgggttttcgagccttgagaggttggtgggtgtgttgttgtgaatctctaagttttctctgtaaattatatatttgttta
9817700
--------->
TOE1(3)
--------->
TOE2(3)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR11(3)
=====================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<<<<<<<<<
GATA-3
<------
ZmHOX2a(2)
<<<<<<<<<
GATA-1
<---------
GLK1(1)
<-----------
GT1
<<<<<<<<<
GATA-4
---------->
DOF2
<---------
TOE1(3)
======================
HOX2a_HOX2a
<-----------
TBP
*
TSS
<<<<<<<<<
GATA-2
------>
ZmHOX2a(1)
<----------
DOF2
<----------
DOF2
<---------
ARR11(3)
<---------------
AGL15
<---------
AGP1
------>
ZmHOX2a(2)
------------>
CBF
----------->
HVH21
<---------
ANAC58
--------->
ARR11(3)
<----------
DOF2
----------->
TBP
--------------->
AGL15
<---------
ANAC58
<---------
AtLEC2
--------->
ARR11(3)
------->
TEIL
----------------->
AGL3
<----------
DOF2
<---------
GLK1(2)
<---------
ARR14(2)
<
catgtatataaaacaatgtttctttttaaagtgacc
cttttaagctttcttgaaaacaagattgtgcatagatctcttctaagatccttagctttgtttt
9817800
---------->
DOF2
------>
ZmHOX2a(2)
--------->
ARR14(3)
<---------
AGP1
<---------
ANAC58
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
<---------
YAB1
--------->
AGP1
<---------
ANAC58
<------
<---------
ARR14(3)
--------------->
AGL15
----------->
RAV1(2)
--------->
ARR11(3)
<---------------
AGL15
<---------
MYB59
--------->
RVE1(1)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
AtMYB61
---------->
DOF2
<---------
ANAC46
---------->
DOF2
------->
TEIL
------>
MYB46(1)
----------
DOF2
<------
ZmHOX2a(2)
--------->
ZAT18
----------->
GT1
<---------
YAB1
------>
MYB83
ctcttttgtgtctaaagatcttgaaagtcttgtgtgcaataacttattaaagagatagaaaaaa
atgaagtttatgaaacttggaaccaaacctgattca
9817900
--------->
TOE2(3)
<
<---------
HSFB2a(2)
<---------
HSFB2a(2)
--------->
HSFB2a(2)
--------->
ANAC58
<
<------
MYB83
<-----------
GT1
--------->
ANAC58
<--
<------
MYB46(1)
<---------
ICU4
------->
TEIL
<---------
YAB1
--------->
HSFB2a(2)
-
TEIL
---------->
DOF2
--------->
MYB59
--------->
AHL20(2)
<---------
YAB1
--------->
ICU4
<--
tttctgtctaaaggagacaatgttag
gtttgtagaaaacaaatatttacctctatgtatttctctgattatgcttaagcaatgttttttctaaaactgat
9818000
--------->
At4g35610
<---------
ICU4
--------->
ATHB12
<---------
YAB1
--------->
YAB1
<---------
TOE1(2)
<---------
ICU4
--------->
ATHB12
<---------
YAB1
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
MYB46(3)
<---------
ICU4
<---------
AHL20(2)
----------->
GT1
<---------
YAB1
<---------
YAB1
<---------
TOE2(2)
--------->
YAB1
--------->
CCA1(2)
---------
AHL20(2)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
<---------
TOE2(3)
---------
AHL20(1)
<---------
ANAC55(2)
--------->
ARR11(3)
--------->
DAG2
-------
YAB1
<----------
DOF2
<---------
ARR11(3)
<-----------------
AGL2
-------
AHL20(2)
<---------
TOE2(3)
--------->
GLK1(1)
<---------
ARR11(3)
attatttttattggctcttag
gtatgtaacaaatgagttagaaacagagatcatcatcatcatcggcaatgtcaagttctatctgcataag
gtatgaaac
9818100
--------->
HSFB2a(2)
<---------
ANAC58
<---------
ANAC58
--------->
At4g35610
--------->
ARR14(2)
---------->
DOF2
<---------
At4g35610
<---------
GLK1(2)
--------->
ANAC58
<-----------
GT1
<---------
ARR14(2)
---------->
DOF2
<---------
ANAC46
--------->
DAG2
<-------
--------->
TOE2(3)
<---------
ANAC58
---------->
DOF2
--------
<----------
DOF2
--------->
ANAC58
<---------
ANAC58
<---------
ETT(2)
<---------
HSFB2a(2)
aaactctagcttttaaaacatcaaagaagaagcaaagtttttatgtttttgtgtgtttttcag
ttcccattgctgtcgaaaagcggattcttgcagaaac
9818200
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AGI:
At2g23050.1
Description:
phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT4G37590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71996.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)
Range:
from: 9817737
to: 9819740
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.