Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ---------->DOF2                          --------->ANAC55(2)                          <---------ANAC55(2)                          --------->ANAC58                          --------->ANAC58                                                  <--------                          --------->ANAC46                                                  ------>ZmHOX2a(1)                          --------->ANAC55(1)                                         <---------KAN4(1) ------->ANAC58          <-------TEIL  <---------YAB1                                 --------->KAN4(1) ------->ANAC58        <---------ARR14(2)                                        ----------->GT1 --->YAB1              --------->ARR14(2)                                      --------------------->WRI1 ---ATHB12         --------->YAB1    --------->YAB1                         <-----------GT1 ---------   caagttactgagagtagacaatgaaaatacgtaaagacatcataaatgaactgtctcaaaccaatacagaagcccatgttaccttgtaatattcctcgaa  9515700                                                       <---------------------WRI1                                                   <-------GAMYB                                                  <---------ANAC46                                                  <---------DEAR3(1)     --------->HSFC1(2)                                               <---------DEAR3(1)        <---------HSFB2a(1)                                            <---------MYB52(1)           --------->HSFB2a(1)                               <------MYB83 <---------SPL7               <---------HSFC1(2)                               <------MYB46(1)--------->SPL7            --------->ANAC58        --------->ZAT6       --------->ALFIN1 --------->SPL1(2)      ------->GAMYB  <---------ZAT6           ================================MYC_MYB  --------->ANAC46             <--- <---------TOE2(3)         <---------TGA1a --------->LBD16 --------->ARR14(2)   --------->ARR14(2) <---------TOE1(3)         --------->O2   --------->HSFB2a(2)     --------->MYB52(1)     <---------DEAR3(2) -HSFB2a(2)                <---------O2  <---------LBD16--------->ETT(1)--------->ANAC58<---------MYB46(3) >HSFB2a(2)                --------->TGA1a<---------HSFB2a(2)--------->MYB46(3) <---------ARR14(2)   gttagggttaacagtgacaataggttcccaagtgggtttttgttccggtacggcgttgtcggaaccatcaacggaagcatcggatttgggtcgtttccaa  9515800                                                                               --------->LBD16                                                                              <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                         <---------At4g35610                                                                         --------->ZAT2                                                                         --------->At4g35610                                                                         --------->HSFB2a(1)                                                                         --------->HSFC1(2)                                                                     <---------ANAC58                                                                     <---------ANAC58                    <---------ARR11(3)                        <---------------AGL15                    --------->ARR11(3)                        --------------->AGL15          <----------DOF2          --------->SPL7       ------>ZmHOX2a(1)<---------HSFC1(2)   ------- ------ATHB12 <----------DOF2  <---------------AtSPL3------>ZmHOX2a(1)  <---------TOE1(2)    --------   acattctctctgctttctttgaaatcttttctctgagtacgacctctatgtcttcctcctcttcccatttttcgtagcttccgtcgaagaaaccaaaaag  9515900                  ----------->GT1               <---------GLK1(2)               <---------ARR14(2)               --------->ARR14(2)             --------->LBD16           --------->RAP2.3(1)           <---------LBD16           --------->ATERF1(1)           <------NtERF2          --------->ABI4(1)          <---------ATERF1(1)          ------>NtERF2         <---------ATERF1(2)         <---------DEAR3(1)         --------->RAP2.3(2)         --------->RAP2.3(3)         --------->ATERF1(2)         --------->RRTF1(2)         --------->DEAR3(1)         --------->RRTF1(3)        --------->ATERF1(1)        --------->RRTF1(1)        --------->ERF1        --------->RAP2.3(1)        --------->ORA47(2)             --------->ARR11(3)       --------->At4g35610             --------->GLK1(2)       ------>NtERF2                   <---------ARR11(3)       <---------ATERF1(1)            --------->RVE1(1)       --------->LBD16         --------->LBD16      --------->ANAC46   <---------ARR11(3)     --------->MYB46(3)  --------->ARR11(3)   --------->ARR14(2)    --------->GLK1(2)   <---------ARR11(3)   --------->RVE1(1)                                         <-----------GT1   <---------ARR14(2)   --------->CCA1(1)                       <---------At4g35610 -->DAG2--------->DEAR4(2)--------->RVE1(1)            *TSS     --------->At4g35610 -->DOF2--------->RAP2.6(1)  <---------LBD16    <---------ARR11(3)             <---------MYB52(1)  <-   ttcaatatccgccgccggattcgaaaaaatctctgggaaaaaatctacaagaactgaagaagtgagagctgtttcttctccgttttacttctcaaatttg  9516000                                                                                                    -                                                                                                    -                                                                                             --------                                                                                  <------NtERF2     -                                                                        <-------TEIL         <-------           <------------CBF                                            --------->ARR14(2)   ---------          --------->ATHB12                                          <---------TOE1(3) --------->ARR14(2)         <---------AHL20(2)                                         <---------TOE2(3) <---------ARR14(2)         <---------YAB1                                        <---------ICU4    ------>NtERF2     <-     <----------DOF2        <---------AtMYB61                 <---------YAB1     --------->LBD16  <--    <---------ANAC58  <---------TOE2(3)      ---------->DOF2  --------->ICU4    --------->ANAC46 *TSS    <---------ANAC58  <---------TOE1(3) <---------ANAC46    --------->YAB1      --------->LBD16  <--- --------AtLEC2   <----------DOF2       ----------->GT1    ----------->GT1     <---------LBD16 ------   ttcatggctttttaattgggctttagggttttggtttttgggccgtataaagcccattagactgataattaaggttcttctcccggcaaattcgccgatg  9516100          --------------------->WRI1          <---------At4g35610      ------->GAMYB     --------->MYB46(3)   --------->MYB52(1) -------->ANAC58 -------->ANAC58 ->At4g35610 -------->ANAC46                                            --------->AtMYB61 --At4g35610                            <<<<<<<<<TBF1      --------->ANAC46 >DEAR3(1)--------->At4g35610        <<<<<<<<<TBF1       --------->REM1(1)                       ---- --------LBD16                 <---------HSFC1(2)   ------>ZmHOX2a(1)                         ------- -------ANAC46                --------->ANAC58  <---------ALFIN1                              <------ --------------------TaNAC69(2)--------->HSFC1(2)------>ZmHOX2a(1)                   <---------YAB1 ----->HVH21   ------->TEIL   --------->ANAC58------>ZmHOX2a(1)                  --------->ARR14(2)<-   acgcgcaacggccgatgaacatatcgaaggccaagcttcttcttcttcctcctcctcttacaccaaaactgaatcgttctctgtattctcattctcagcg  9516200       <------ZmHOX2a(2)       ===============HOX2a_HOX2a                                          ------>ZmHOX2a(1) ----------->AtSPL8                                                    --------->ARR14(2) -->At4g35610           <----------ID1                             --------->ANAC46--------->ATHB12 ---At4g35610   <---------ICU4                              <---------ANAC58      <---------YAB1 --------SPL7  ------>ZmHOX2a(1)             --------->ZAT6 <---------ANAC58    <----------DOF2   tcgtactcgatcacttcctcatcacagagacaaacccataaactggaactctactcacagtttcgttctacacaatcctctactttcattgctcgaaaaa  9516300                                                                                         <----------DOF2                                                                                        <---------ANAC58                                            <---------AHL20(2)                          <---------ANAC58                                           <---------YAB1                            <---------WOX13(1)                                         --------->YAB1                            --------->MYB52(2)                                        <---------YAB1                           <---------MYB52(1)                                      --------->YAB1                            <-------GAMYB                                   <---------At4g35610       --------->PCF2--------->ANAC46          <-----------GT1          --------->At4g35610    --------->HSFB2a(2)  ----------->GT1    <--    <----------DOF2              <-----------RAV1(2)      <---------HSFB2a(2)  --------->LBD16  <----   tgcaaacttttgttacatttgaagcaaattcaagctcagatgataataaatggtttgattctggacccatttgcttcaagccggttaattgctttctgtg  9516400                                             --------->ARR11(3)                                           <---------TOE2(3)                                         ---------->DOF2                                      --------->TOE2(3)                                    --------->GLK1(2)                                      --------->ARR14(2)               <---------ARR11(3)  --------->ARR14(2)                                      <---------GLK1(2)       --------->GLK1(2)           <---------ARR11(3)           --------->ARR14(2)         <---------ARR14(2)      <---------GLK1(2)            <---------GLK1(2)            <---------ARR14(2)        <------ZmHOX2a(1)      --------->ARR14(2)           <---------ARR14(2)           <---------GLK1(2) --------->ATHB12 --------DOF2  --------->ARR11(3)  --------->ARR11(3)        --------->YAB1      <---------YAB1 -----ZAT18   <---------GLK1(1)  ----------->ARR10      --------->TOE1(3)        --------->ICU4   cattatcggaatctcgatatctcgattactctgtgaagattcttaaaggtattgagaaccctaacatattctcttggaatgtaacgattagaggattctc  9516500                                                        <-------GAMYB                  --------->GLK1(2)                    --------->MYB111(2)                 <---------GLK1(2)                     <---------MYB46(3)             ---------->DOF2                           --------->MYB55(2)            ------>ZmHOX2a(1)           <---------GLK1(2)                             -------->P        --------->ARR14(2)             <---------At4g35610                       <-----------GT1        <---------ARR14(2)             --------->At4g35610                 <------ZmHOX2a(2)        --------->GLK1(2) <-----------GT1             <--------P         <---------ARR14(1)   tgagagtgagaatcctaaagaatcgtttttgctctataagcagatgcttagacatggttgttgtgagtccagaccggatcatttcacttaccctgttttg  9516600  Previous    Next  AGI:  At2g22400.1    Description:  NOL1/NOP2/sun family protein. similar to NOL1/NOP2/sun family protein [Arabidopsis thaliana] (TAIR:AT4G40000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70164.1); similar to hypothetical protein OsI_030687 [Oryza sativa (indica cultivar-group)] (GB:EAZ09455.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45516.1); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 9511739    to: 9515955    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g22410.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD33115.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21928.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78822.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9516097    to: 9518311    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.