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Chromosome 1
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Chromosome 3
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC58
------->
GAMYB
--------->
DEAR3(1)
--------->
RAP2.6(2)
--------->
ANAC46
--------->
MYB46(3)
<---------
MYB55(2)
<------------
AtMYB77
--------->
DEAR3(2)
<---------
ATERF1(1)
<----
<-----------
ARR10
--------->
ANAC58
--------->
ZAT2
<----
---------->
DOF2
--------->
ANAC58
<---------
ALFIN1
------------------>
SPL14
----------->
GT1
<---------
At5g28300
--------->
ANAC58
------>
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
MYB52(1)
--------->
ANAC58
<-----------
GT1
------>
ZmHOX2a(1)
cgaggatgtgttaaaagagagtctaaccgccaaggcaagtcccatggataagccccagcctccctctcgtttcactctcgttcctctccttacagtcgag
3450200
--------->
ANAC58
--------------------->
WRI1
<---------
At4g35610
---------->
ID1
<------
NtERF2
--------------------->
WRI1
<---------
ZAT14
<------
<----------
DOF2
<---------
ATHB12
--------->
ZAT18
---------
-----
ZAT2
--------->
WOX13(1)
<---------
WOX13(1)
--------->
ANAC58
-----
At4g35610
------->
TEIL
--------->
ATHB12
--------->
At4g35610
ctcctttgttccttcggacctctcgcccaaatgaaatgggatgaatccaatcaataagcttattgattgattcagagcgcagcgaagccaaattcaatca
3450300
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
<------
ZmHOX2a(2)
----------->
TGA1
------->
TEIL
<----------
DOF2
--------->
ARR14(2)
<---------
DAG2
--------->
DAG2
<---------
ARR14(2)
<---------
DEAR3(1)
<---------
At4g35610
=================================
HOX2a_HOX2a
--------->
ALFIN1
----------->
HVH21
<------
ZmHOX2a(1)
--------->
CCA1(2)
---------->
DOF2
----------->
RAV1(2)
================================
HOX2a_HOX2a
---
ATHB12
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
TOE2(3)
<---------
At4g35610
-
>
WOX13(1)
<---------
ANAC58
<----------
CDC5
--------->
YAB1
---------->
DOF2
--------->
ARR11(3)
aggcaaaggggggcttacttttcctgacgctgagtcatcctattcaaatttagctatgctaatgtaacaggaaaagttttcacagatgatatggatccca
3450400
------>
ZmHOX2a(2)
=============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<----------
DOF2
<---------
ARR11(3)
<---------
MYB52(1)
--------->
ARR14(3)
--------->
ANAC46
<-----------
ARR10
--------->
ZAT18
<------
MYB46(1)
<---------
ZAT18
<---------
ANAC46
------>
ZmHOX2a(2)
<------
MYB83
============================
HOX2a_HOX2a
<---------
TOE1(3)
<---------
MYB46(3)
<---------
TOE1(2)
<---------
TOE2(3)
--------->
MYB55(2)
<-----------
HVH21
<---------
ANAC58
--------->
At4g35610
--------->
AGP1
--------->
LBD16
--------->
ARR14(2)
<------
ZmHOX2a(1)
<----------
DOF2
<---------
LBD16
------>
ZmHOX2a(1)
-------->
CCA1(2)
<---------
ANAC58
<---------
At4g35610
----------->
ARR10
----------->
RAV1(2)
agagatgagcgagaacctccaattgcttaaggatcgcactccgctatcccgcttggtggacgagatcttctctcgggtcatccatcctgggttactgaag
3450500
<---------
MYB59
----------------->
AGL1
--------->
WRKY38(1)
<---------
DAG2
----------->
HVH21
<----------
DOF2
<-----------
HVH21
-------->
ZAP1
---
<---------
DEAR3(1)
<---------
At5g28300
---
<---------
ZAT14
<---------
WRKY18(1)
--------
--------->
ZAT2
<-----------
GT1
<--------
<---------
ZAT2
----------->
HVH21
---------
<---------
SPL7
--------->
WRKY12
--------->
WRKY38(1)
<---------
ALFIN1
*
TSS
<---------
ATHB12
-----
ggttgtccgactgctcggtgaccgaatcagagaagttttgaccgctttctcttctctccagcactctcggactg
atcatccaatccatcttgctgcgaca
3450600
<---------
ZAT2
<---------
DAG2
--------->
ANAC58
<----------
DOF2
--------->
ANAC58
--------->
GLK1(2)
------>
ANAC58
--------->
ARR11(3)
<----------
ID1
<------
ZmHOX2a(1)
------>
ANAC58
<----------
DOF2
----------------->
AGL1
--------->
DAG2
--->
RAV1(1)
<------
NtERF2
----------------->
AG
---------->
DOF2
--
-
ETT(1)
<---------
ZAT18
<----------
DOF2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
-->
HVH21
<------
ZmHOX2a(1)
------>
NtERF2
<---------
ARR11(3)
---------->
DOF2
--------->
REM1(2)
----->
DOF2
------->
TEIL
--------->
MYB59
<---------
GLK1(2)
----------->
HVH21
--------->
ALFIN1
aagcaagcttaggaatgaatctaagaaatttaggtctctgcccgcttgaaagattcttctttccttttcggtgaaagagggcaaaagtgtgtaggagaaa
3450700
<---------
CCA1(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
xxxxxxxxxxxxxx
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
<---------
AHL20(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
--
------>
NtERF2
---------->
DOF2
--------->
AHL20(2)
<---------
RVE1(1)
<---------
ATERF1(1)
<---------
YAB1
<---------
TOE2(3)
<---------
DEAR3(1)
<---------
ALFIN1
---------->
DOF2
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
DEAR3(1)
--------->
ANAC46
---------->
DOF2
--------->
ICU4
<---------
TOE1(3)
------->
GLK1(1)
--------->
DEAR3(1)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
AHL20(2)
<-
gaattctaaaaacgtcgacgcttaattcgccccctccatccttcaaaagtaaaagaaaggctcaaatatcaatattatatatatatttgaggatatttta
3450800
--------->
GLK1(2)
<---------
GLK1(2)
<------
MYB46(1)
<---------
ATHB12
<---------
ANAC46
------>
MYB83
<---------
DEAR3(1)
------>
MYB46(1)
--------->
MYB111(2)
--------->
MYB52(1)
----------->
GT1
<------
MYB83
--------->
TOE2(2)
--------->
ANAC58
--------->
MYB46(3)
--------->
ANAC58
--------->
DEAR3(2)
<<<<<<<
ZML2
--------->
ALFIN1
----------->
GT1
<---------
MYB52(2)
<
--------->
HSFB2a(2)
<---------
MYB46(3)
---------->
DOF2
<---------
MYB55(2)
-
<---------
HSFB2a(2)
--------->
MYB55(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<
xxxxxxxxxxxxx>
smallRNA(le3)
--------->
ANAC58
--------->
ANAC46
<-
------->
ZAT18
--------->
DAG2
<---------
YAB1
<---------
TOE2(3)
<xx
--------
ZAT18
---------->
DOF2
--------->
ANAC58
--------->
ICU4
--------->
TOE1(2)
-----
gggccctagaacgcaaaaaaaaggtgggtgaacaagagttgtcacgataggaaagagaa
atgactataaggaaccaacgattctctcttcttaaacaacc
3450900
<---------
At4g35610
--------->
At4g35610
--------->
DOF5.7(2)
<-------
GAMYB
<-----------
HVH21
<------
MYB46(1)
--------->
ANAC55(1)
<------
MYB83
<---------
ALFIN1
--------->
ANAC58
<---------
DEAR3(2)
<---------
ALFIN1
--------->
ANAC58
--------->
MYB59
------>
ZmHOX2a(1)
--------->
LBD16
<-------
TEIL
--------->
ANAC46
--------->
LBD16
<---------
MYB46(3)
---------
ARR11(3)
------->
GAMYB
<---------
MYB46(3)
-------->
ARR14(2)
------>
MYB46(1)
--------->
ALFIN1
<---------
ZAT2
---------
ARR14(2)
------>
MYB83
<---------
ANAC46
--------->
MYB52(2)
--------
CCA1(2)
<---------
GLK1(2)
--------->
ATHB12
<---------
MYB46(3)
xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
-------->
P
--------->
TOE2(3)
<---------
SPL7
<---------
MYB52(1)
---->
TOE2(3)
--------->
YAB1
<-----------
GT1
--------->
YAB1
<------
NtERF2
<---------
MYB52(1)
----
tatatcctccacacttaatcagcatttagtagattatccaaccccgagcaatcttagttattggtgggggttcggtccgttagctggtatttgtttagtc
3451000
<
<
<
<-
xxx
<---------
ANAC46
<---------
ARR14(2)
<---
<---------
ANAC58
--------->
ANAC46
<---------
ANAC46
------
<---------
ANAC58
--------->
ANAC46
------->
GAMYB
--------->
ARR11(3)
----->
WOX13(1)
<---------
ALFIN1
<----------
DOF2
<---------
YAB1
<-----
attcagatagtgactggcgtttttttagctatgcattacacacctcatgtggatttagctttcaacagcgtagaacacattatgagagatgttgaagggg
3451100
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AGI:
At2g07727.1
Description:
cytochrome b (MTCYB) (COB) (CYTB). Identical to Cytochrome b (MT-CYB) [Arabidopsis Thaliana] (GB:P42792;GB:P93289); similar to apocytochrome b [Solanum tuberosum] (GB:CAA41343.1); similar to apocytochrome b [Brassica napus] (GB:YP_717171.1); similar to apocytochrome b [Nicotiana tabacum] (GB:YP_173366.1); contains InterPro domain Transmembrane di-haem cytochrome; (InterPro:IPR016174); contains InterPro domain Cytochrome b/b6, N-terminal; (InterPro:IPR005797); contains InterPro domain Cytochrome b/b6; (InterPro:IPR016175); contains InterPro domain Cytochrome b/b6, C-terminal; (InterPro:IPR005798)
Range:
from: 3450575
to: 3452041
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.