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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
------->
TEIL
------>
MYB46(1)
------>
ZmHOX2a(1)
------>
MYB83
=============
<---------
MYB59
================
HOX2a_HOX2a
------>
MYB83
<-----------
GT1
--------->
ICU4
<---------
ARR11(3)
<
------>
MYB46(1)
--------->
ANAC55(2)
--------->
ARR11(3)
-
----------->
RAV1(1)
<---------
ANAC55(2)
--------->
MYB52(1)
--------->
TOE2(3)
<---------
YAB1
--------->
TOE1(2)
--------->
ANAC55(1)
<---------
ICU4
<------
ZmHOX2a(2)
-
tatacatgattcaaaaccacatataacctacaaaaacaattgaacaacatgtaacctaatgaactcataatcaacgaagagatcatattcctcagaatca
2590100
-
=
--
<-
<--
<-----------
GT1
---
<---------
ICU4
---
--------->
ICU4
-----
------>
ZmHOX2a(2)
<---------
AHL20(2)
<------
ZmHOX2a(2)
<-------
================
HOX2a_HOX2a
--------->
YAB1
--------->
TOE1(2)
--------->
ANAC58
---------
MYB59
--------->
YAB1
<------
ZmHOX2a(2)
<-----------
GT1
----------
-------->
TOE1(3)
----------->
GT1
--------->
ARR11(3)
<---------
ICU4
--------->
ANAC58
-------->
TOE2(3)
<---------
ATHB12
<---------
ARR11(3)
<-----------
GT1
--------->
ANAC46
aacctaaattgatctaatttcaaatcaagtataaaaattacaagatcaaaacttgcgatcatcgaatatttcactaattacaaactcaataagcaacaca
2590200
--------->
ANAC58
----------->
HVH21
--------->
LBD16
<---------
ETT(1)
<---------
ANAC46
----->
ZmHOX2a(2)
<---------
LBD16
====================================
HOX2a_HOX2a
------->
CCA1(2)
--------->
TOE1(2)
-------------
-----
ZmHOX2a(2)
--------->
TOE2(2)
--------->
ATHB12
-------
ARR14(2)
----------->
RAV1(2)
--------->
LBD16
<---------
ICU4
-----
------>
AGP1
--------->
GLK1(2)
<---------
HSFB2a(2)
<---------
YAB1
------
------>
ARR14(2)
------->
TEIL
---------->
ID1
--------->
YAB1
-------
------>
ARR10
---------->
DOF2
<---------
HSFB2a(1)
--------->
HSFB2a(2)
--------->
ICU4
--------
--
ALFIN1
--------->
CCA1(2)
--------->
ARR11(3)
<----------
DOF2
--------->
ICU4
<-----------
->
RAV1(1)
--------->
ANAC58
<------
ZmHOX2a(1)
<-----------
GT1
--------->
YAB1
-------------
gatccgacaagagacgaaatcgagagaaaggaggataagaac
ctgcgggagtttttcgctttccgaagattgaattcatcat
gattcaataccgaaaaag
2590300
--------->
TOE1(2)
--------->
GLK1(2)
--------->
ARR14(2)
<------
NtERF2
<---------
ARR14(2)
------>
NtERF2
---->
AGL1
<---------
DEAR3(1)
------>
GT1
<----------
ID1
--->
DAG2
--------->
ANAC58
-->
DAG2
<---------
WRKY18(1)
---------
-->
DOF2
<---------
HSFB2a(2)
<---------
TOE2(3)
----------->
GT1
--------->
AHL20(2)
----
AGL15
--------->
HSFB2a(2)
---------->
DOF2
------>
ZmHOX2a(2)
<---------
AHL20(2)
---->
AG
<----------
DOF2
--------->
ANAC58
--------->
TOE2(3)
<---------
YAB1
gtgaacaaatctgggacttttgtagaagcttgaacgaaattaaggcgacgaattagcaaaacctttgatcggagttgaaaaatcgagattatttttatat
2590400
---------->
DOF2
<---------
ANAC55(2)
--------->
ANAC46
--------->
ANAC58
--------->
ARR14(2)
--------->
HSFB2a(1)
<---------
ANAC55(2)
--------->
At4g35610
--------->
ANAC55(2)
<---------
At4g35610
--------->
ANAC58
<----
--------->
ZAT2
<---------
ARR14(2)
-----
<---------
HSFB2a(1)
<-------
TEIL
--------->
DAG2
<-----
<---------
HSFC1(2)
--------->
ARR14(1)
<---------
AHL20(2)
<---------
ANAC58
--------
--------->
HSFC1(2)
--------->
CCA1(2)
<------------------------
ANAC81
----------
------->
TEIL
--------->
ARR11(1)
--------->
ATHB12
<---------
ANAC58
----------
--------->
CCA1(2)
--------->
CCA1(2)
--------->
ICU4
<----------
DOF2
--------->
AHL20(2)
>
AHL20(2)
<---------
DEAR3(1)
>>>>>>>>>>
AtSR1
*
TSS
<-----------
GT1
<---------
AHL20(2)
agaagagacgaagcttccttcggtgagagatacgaaacgcgtaaaggaat
gatttttttttttcttccttttttcttgagaagtttttttaatatcaatt
2590500
--------->
YAB1
--------->
GLK1(2)
<------------
CBF
<---------
ATHB12
--------->
MYB46(3)
<---------
YAB1
<----------
DOF2
------------>
CBF
<---------
TOE2(3)
--------->
ARR14(2)
-----
ICU4
<---------
ICU4
<---------
ARR11(3)
---->
YAB1
--------->
ATHB51
--------->
ARR11(3)
----
ATHB51
<--------
HAHB4
<----------
DOF2
--------->
RVE1(1)
<-----
->
WOX13(1)
--------->
ICU4
<-----------
GT1
------>
ZmHOX2a(1)
<-----------
GT1
-------
-->
CBF
<---------
YAB1
--------->
YAB1
--------->
TOE2(3)
<---------
AHL20(2)
<------
------->
AGL3
--------->
YAB1
--------------------->
WRI1
--------->
CCA1(1)
<-------
TEIL
atagcaacaatctttctcataattaacattggagacctcttataacttttggacctccttaaaaatatcttctttttaatcatactacgatgatgttcgt
2590600
------->
TEIL
--------->
LBD16
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
AHL20(2)
<---------
ARR11(3)
<---------
YAB1
<-----------
ARR10
<---------
AHL20(2)
--------->
ARR14(3)
<---------
AHL20(1)
<---------
ARR14(3)
<---------
YAB1
--------->
ARR11(3)
<---------
AHL20(2)
<-
<---------
ARR14(2)
<---------
YAB1
--
--------->
ARR14(2)
<---------
MYB52(1)
--------->
AHL20(2)
----
<---------
AGP1
<-----------
GT1
<---------
AHL20(2)
<---
--
GAMYB
<---------
LBD16
--------->
AHL20(2)
<----
-->
MYB52(2)
<---------
HSFB2a(2)
<---------
AHL20(2)
<----------
DOF2
----
---
MYB46(3)
--------->
HSFB2a(2)
---------->
DOF2
<---------
AHL20(1)
<-------
tgtgaagatctcatccggatgaaccgttcttagaacatgggcaatatagtatcacaaaagaattttttaatattattattttttctttaactcaactttc
2590700
------->
TEIL
--------->
YAB1
--------
AHL20(2)
------->
AHL20(2)
----------->
AGL15
<---------
TOE2(3)
------------
AGL15
<---------
ZAT6
----------->
RAV1(2)
-------------
AGL3
<---------
ICU4
<-------
TEIL
----------->
GT1
<---------
GLK1(2)
----->
TOE2(3)
--------->
ICU4
<------
ZmHOX2a(1)
--------->
TOE1(2)
---------->
DOF2
---
DOF2
<---------
TOE2(2)
<---------
TOE1(3)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
attaattagaacgtatgtaatcagtgtgaattaaggatgaaatacatctggggacataatagaagaacataagatggaaaaaacccaaaaagaatttcaa
2590800
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxx
--------->
AHL20(2)
------->
GAMYB
----------->
GT1
<-----------
GT1
--------->
ANAC46
<-----------
GT1
<--------
----------->
GT1
--------->
ANAC58
--------->
AHL20(2)
---
<---------
AHL20(2)
<<<<<<<<<<
MYB80
--------->
ANAC58
<---------
ZAT18
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ATHB12
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
ctattttttatttggacgtttaatatccaatcgtttttggtttgaagataaatacacgaagtaataaaactgtgcaatttaacacccagacaattaaatg
2590900
<---------
AHL20(2)
--------->
AHL20(2)
<--
<---------
AHL20(2)
<---
--------->
AHL20(1)
----
--------->
YAB1
<------
<------
ZmHOX2a(2)
<-------
--------->
YAB1
--------->
YAB1
<---------
AHL20(2)
--------
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
AHL20(1)
<-----------
GT1
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
TOE2(3)
<---------
AHL20(2)
<---------
ARR11(3)
xxxxx
smallRNA(le3)
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
AHL20(2)
--------->
ARR11(3)
-
AHL20(2)
<---------
ARR11(3)
--------->
TOE1(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
-------->
GT1
--------->
ARR11(3)
<-----------
GT1
--------->
AHL20(2)
<---------
YAB1
ttgttattttcatactcacgatctcataacaaaaataaaattccaattttacccttaacatctcaattaactattaatttttagatggtatgatattaat
2591000
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AGI:
At2g06530.1
Description:
VPS2.1. similar to VPS2.3 [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80030.1); contains InterPro domain Snf7; (InterPro:IPR005024)
Range:
from: 2588542
to: 2590450
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.