Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                <------ZmHOX2a(2)       --------->ZAT14                                                         --------->ARR11(3) ---->At4g35610                                                   ---------->DOF2------>ZmHOX2a(2) --At4g35610                                                  <---------ANAC46 <---------ARR11(3)   atggagaagtgaagtatgtatagatagcttcgagggacacaaaaacacagagaaacttgaaatcgggtgaaagaaacttgagatctcaaatccaaaaccc  555700                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                      --------->CCA1(2)                     <---------ARR11(3)                     --------->AGP1          --------->GLK1(2)         <---------ARR14(2)         --------->ARR14(2)     <---------At4g35610             --------->YAB1                                      --------->ANAC58     --------->At4g35610             <---------ICU4                                      --------->ANAC58  ---------->DOF2    <---------AGP1 --------->ICU4 <-----------GT1                       --------->ANAC46 --->TOE1(3)         <-----------ARR10          --------->WOX13(1) ---------->DOF2     <---------DOF5.7(2) --->TOE2(3)         --------->ARR11(3) --------->YAB1        <---------TOE1(2)  ---------->DOF2   taattgaagcagaaactggataagatctaagcgaaacaataatcaaaaatcaattaccttcttgcaggttaaaggagaagcgagaaagtaaacgcaatcg  555800                                                                                                    <                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                               <-----                                                                                              -------                                                                                    <---------ATERF1(1)                                                                         <-------GAMYB        <------                                                                        <---------MYB46(3)   --------                                                                       <---------ANAC58     <--------                                                                       <---------RAP2.6(2) <---------ATHB12                                                                       <---------ANAC46    --------->ICU4                                                                      <---------LBD16 --------->RAP2.6(2)                                                       <---------At4g35610         <---------DEAR3(1)                                          --------->ATHB12  <-----------RAV1(1)   <-----------RAV1(2)                                         <---------YAB1--------->At4g35610<---------MYB52(1)---------                           --------->At4g35610      <---------At4g35610<---------ANAC58 <------NtERF2                           <---------At4g35610 <---------ANAC58    <-------GAMYB  --------->ATERF1(1)         ---------->DOF2--------->At4g35610    <---------ANAC58   <-----------RAV1(1)--------->RAP2.3(1)   <---------ALFIN1     <---------At4g35610 <---------WOX13(1)    ============================RAV<---   gtgttccacttcaaagcatcttcttcagcagatgaaacagtctctgattgcttcttctgctcatgttgctgttgcggttgagtcgcaggcgcaaacatta  555900   <---------ANAC58   <---------ANAC46   <---------ANAC58 ---------YAB1 -------ICU4 ------>YAB1 ----->ICU4                                                          ----------->GT1 ----ICU4                <----------DOF2                           <---------ARR11(3) -->ICU4          ------->TEIL                                     --------->ARR11(3) ---YAB1  <---------HSFC1(2)                                   <------ZmHOX2a(1) ->TOE2(3)<---------HSFB2a(1)                      ===================HOX2a_HOX2a                ---- -ICU4    --------->HSFC1(2)                       <------ZmHOX2a(2)<------ZmHOX2a(2)           <---- >YAB1    --------->HSFB2a(1)        ------>ZmHOX2a(2)     --------->TOE1(2)<-----------GT1     <---- ------YAB1      <---------GLK1(2)   =================================HOX2a_HOX2a               -----   ttattacttggaaatttctgaatctctctttcaagtagatcgcaaggtttcagatcgaaaccctaggaagatcgaaaatcaccgattcagagagagtccc  556000                                   <---------ZAT18                              ---------->DOF2                         ----------->RAV1(1)                        <------NtERF2                       <---------RAP2.6(3)                       <---------ATERF1(1)                      --------->ANAC58                      >>>>>>>>>AtERF-4                      >>>>>>>>>AtERF-3                      --------->ATERF1(2)                      <---------ATERF1(2)                      >>>>>>>>>AtERF-7                      >>>>>>>>>>AtTINY2                      --------->ANAC58                      --------->ANAC46                      --------->RRTF1(2)                      --------->RRTF1(3)                      --------->RAP2.3(3)                      --------->RAP2.3(2)                      >>>>>>>>>AtERF-2                      --------->RAP2.6(2)                      --------->DEAR3(1)                      >>>>>>>>>AtERF-1                      >>>>>>>>>AtERF-5                     --------->RAP2.3(1)                     --------->ERF1--------->ZAT18                      <----------DOF2                     --------->ATERF1(1)                              <---------------AGL15       >>>>>>>>>TBF1 --------->DEAR3(2)                               --------------->AGL15    >>>>>>>>>TBF1    --------->RRTF1(1)                             <---------ZAT18 <XXXXXXXXXXXXXXXXXXXXMIR838---------->DOF2                      <---------ANAC58 ----->LBD16         --------->MYB46(3)                          --------->ALFIN1 -----O2            --------->ZAT2 <---------ZAT14               <---------ANAC58 -----ANAC46        <---------ATERF1(1)            --------->ANAC46 --------->ZAT18     ---------->DOF2 ---->O2  >>>>>>>>>TBF1------>NtERF2 ----------->RAV1(1)   <---------ANAC46---------->DOF2   gtggaagaagaagaagaagacgagccgccacaaagagcgcaccagagagaaactcgcgactgtgtgtgtgtgccctttaaagctaagcctaaaagttttt  556100                                                                                   --------->ALFIN1                                                                                  ------->MYC3                                                                                  <-------MYC4                                                                                  ------->MYC4                                                                                  <-------MYC3                                                                                  ------->MYC2                                                                                  ------->PIF5                                                                                  <-------MYC2                                                                                  <-------PIF5                                                                                 --------->TGA1a                                                                                 --------->O2                                                                                 <---------ANAC55(2)                                                                                 <---------O2  <-----                                                                                 <<<<<<<<<<HY5-------                                                   ----------->GT1          ----------->HVH21 -------                                   ------------>CBF<------MYB83      --------->AHL20(2)      <-------                            ----------->GT1        <------MYB46(1)  <---------ATHB12      --------->AHL20(2)            *TSS          <---------ANAC46        --------->MYB59 --------->WOX13(1)      --------->ICU4        <----------DOF2----------->HVH21   <------ZmHOX2a(2)    <---------ATHB12 <---------TGA1a    ---------->ID1   --------->ANAC55(2)  --------->ARR11(3)    ------------>CBF------------>OsbHLH66   ttttttggctctttttttttcttatgtgatgggaaatatcaatagatcaagttcggtttatttgtaatcaatcaaatactgacacgtggggatttattat  556200                                                                                               <-----                                                                                        ----------->GT1                                                                                       --------->DAG2                                                                                  <---------ATHB12 -------CBF                      --------->YAB1                                   <---------YAB1 -->ATHB51                      <---------YAB1    --------->MYB46(3)----------->GT1--------->YAB1   < -->ATHB12          <---------ANAC58      <---------YAB1  <----------DOF2         --------->ICU4 <--- --YAB1             <---------ANAC58<-----------GT1--------->TOE1(2)<---------ANAC46   <---------TOE2(3)   tggtttatttgttagccatattgtttgccttgatattataacttctgatggaaccagcgactttggaatgttgtgaaatagacaatgataaggtgattta  556300                                     <----------DOF2                                    ===============================HOX2a_HOX2a                                    ------>ZmHOX2a(2)                                   ================================HOX2a_HOX2a                                   <---------RVE1(1)                                   <------ZmHOX2a(2)                                  --------->ARR11(3)                                  --------->ARR14(2)                                  <---------ARR14(2)                                  <---------ARR11(3)                                  <---------AGP1                      --------->TOE2(3)                                 <---------CCA1(2)             <-----------ARR10                               <--------P                     --------->GLK1(1)  ------>MYB46(1)            <------MYB46(1)                <------ZmHOX2a(1)<---------AHL20(2)  ------>MYB83               <------MYB83                 --------->ANAC58  --------->AHL20(2) ----AHL20(2)               <---------MYB46(3)    --------->ATHB12   --------->MYB46(3) ---------MYB59           <---------MYB52(1) <---------ATHB12 <---------GLK1(1)              -------- --------GT1             --------->ATHB12    <<<<<<<<<ARR2--------->ANAC58  <---------AHL20(2)   aaccgaacttgaaccaaaattgtaaaccgattggtagatcttttacaatcaaacattggtaaggaaatctaaccaaaattaaatccaaaccaaaatcaaa  556400                                                ------>ZmHOX2a(2)                                               <---------GLK1(1)                                               <------ZmHOX2a(2)                                               --------->GLK1(1)                                              <---------ARR14(3)                                              --------->ARR14(3)                      ---------->DOF2                                              <---------AGP1                       <---------MYB52(2)                       --------->ARR11(3)     --------->ARR11(3)              --------->ANAC58  -----                       <---------ARR11(3)     <---------ARR14(2)              --------->ANAC58  -----                    ==================================HOX2a_HOX2a           ---------->DOF2<------ZmHOX2a(2)                    <------ZmHOX2a(1)         <---------ARR11(3)      <---------------AtSPL8    -----    <<<<<<<<<MYB2   ===================================HOX2a_HOX2a    <---------ARR11(3)  --------->ARR11(3) ->YAB1    <----------DOF2                    --------->ARR14(2)      --------->ARR11(3)  <---------ARR11(3)   actttggttttcactttggtaaggacatcttgaaccgagtaattcgaagatctctcaaaaccaaaatttgaagatgtacaaagcaactaaaagatcacaa  556500                                 <---------YAB1           ---------->DOF2    --------->ICU4 ---->ANAC58                  <---------ATHB12                                    <------ZmHOX2a(1) ---->ANAC58         <---------YAB1    ---------->DOF2                    --------->YAB1 ---->ANAC46    <----------DOF2--------->YAB1               <-----------GT1      <---------YAB1    --   gaaataagtttttcaaagcttttattatacaaatgatgatagaaagatgtgttcttgagaattaacaacatcacattcacaataggattggatttaagaa  556600  Previous    Next  AGI:  At2g02160.1    Description:  zinc finger (CCCH-type) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO15426.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 553109    to: 556112    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g02170.1    Description:  remorin family protein. similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G30320.1); similar to hypothetical protein OsI_005438 [Oryza sativa (indica cultivar-group)] (GB:EAY84205.1); contains InterPro domain Remorin, C-terminal region (InterPro:IPR005516) Range:  from: 556492    to: 558797    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.