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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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>>>>>>>>>
GATA-3
>>>>>>>>>
GATA-4
<---------
ANAC46
--------->
ALFIN1
<---------
MYB52(1)
--------->
CCA1(2)
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC46
<---------
AGP1
------>
MYB46(1)
--------->
ARR14(2)
-------->
P
<---------------
AGL15
<---------
ARR11(3)
------>
MYB83
--------->
AGP1
--------->
MYB52(1)
--------->
ANAC58
<---------
ARR14(2)
--------->
MYB55(1)
--------->
ANAC58
<---------------------
WRI1
------>
ZmHOX2a(2)
<---------
MYB59
<---------
ARR14(2)
--------->
HSFB2a(2)
----------->
ARR10
--------->
AtMYB61
--------->
ARR14(2)
<---------
HSFB2a(2)
--------->
DAG2
>>>>>>>>>
GATA-1
<---------
ARR11(3)
==============
--------->
GLK1(1)
---------->
DOF2
>>>>>>>>>
GATA-2
--------->
ARR11(3)
<------
ZmHOX2a(1)
agtgagatttctagtacaagatgcgaacaaggtaaagctagatctgtgtggattgaatagaaggaagacctac
cgtgagttcaatatgaggaaacgcaga
30115800
<------
ZmHOX2a(1)
======================
HOX2a_HOX2a
==================
HOX2a_HOX2a
<---------
ARR14(2)
=========================
HOX2a_HOX2a
==============================
HOX2a_HOX2a
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
------
--------->
At4g35610
<------
ZmHOX2a(1)
----------->
GT1
<---------
ANAC46
<---------
At4g35610
<------
ZmHOX2a(1)
<----------
ID1
<---------
DEAR3(1)
==============
HOX2a_HOX2a
<------
ZmHOX2a(1)
----------->
GT1
--------->
ARR14(2)
<------
NtERF2
gtgaagctgatcgagcgatgaggaaggaggagaggaccagattggagaattggaaggcgaaaaacatcggaacctcttagaagagggcggagaagaatta
30115900
--------->
LBD16
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC55(2)
<---------
LBD16
<---------
ARR14(2)
--------->
ARR14(2)
<---------
O2
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
AtMYB61
--------->
GLK1(1)
--------->
ANAC46
>>>>>>>>>
MYB2
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
REM1(2)
--------->
At4g35610
<---------
GLK1(1)
--------->
ANAC58
--------->
At5g28300
--------->
ZAT2
---------
<---------
ARR11(3)
<---------
LBD16
<---------
ANAC46
<---------
At4g35610
---
--------->
ARR11(3)
--------->
ARR14(2)
----------->
GT1
<---------
ZAT2
---------
--->
YAB1
<---------
AGP1
<---------
ARR14(2)
----------->
HVH21
----------->
HVH21
---------
tcgtcgaagtaagatctcttggttccgcaatatacggcagacat
ggccctggccgtgaaaaccaaaacaagaattgacagctgattcgatccaaacgcga
30116000
======================
HOX2a_HOX2a
<------
ZmHOX2a(2)
==========================
HOX2a_HOX2a
------>
NtERF2
<---------
TOE1(3)
--------->
DEAR3(1)
<---------
TOE2(3)
<---------
GLK1(1)
<---------
SPL7
>
ANAC58
--------->
At4g35610
<---------
HSFB2a(1)
<---------
ANAC46
------>
AHL20(2)
>>>>>>>>>
TBF1
--------->
ARR14(2)
<------
ZmHOX2a(1)
>
ANAC58
>>>>>>>>>
TBF1
--------->
GLK1(2)
<------
ZmHOX2a(1)
>
ANAC46
<------
ZmHOX2a(1)
<---------
GLK1(2)
<---------
TOE2(3)
<-
taaattagggtttagggagaaggagaagaagaagaagatgactcttgaagaaagaatctccgacgatcgagagagattgaggaaggagcgtcgtaagaga
30116100
--------->
GLK1(2)
--------->
ARR11(3)
<-----------
ARR10
<---------
ARR11(3)
<---------
ARR11(1)
------->
TEIL
<---------
ARR14(2)
--------->
ARR14(2)
<---------
CCA1(2)
*
TSS
<---------
MYB59
<---------
ARR14(1)
--------->
GLK1(1)
--------->
ANAC58
--------->
ANAC55(2)
<---------
GLK1(1)
---------->
DOF2
--------->
ARR11(3)
<---------
ANAC55(2)
<---------
ANAC58
--------->
TOE2(3)
<---------
ARR11(3)
---
<---------
ANAC58
--------->
ATHB12
--------->
YAB1
<-----------
RAV1(2)
<----
<---------
ANAC58
<---------
TOE2(3)
<----------
DOF2
--------->
ANAC58
<----------
<---------
ANAC46
<---------
TOE1(3)
<----------
DOF2
<-----------
RAV1(2)
<-----------
GT1
--------
ARR14(2)
<----------
DOF2
<---------
ANAC58
--------->
TOE1(3)
<------
ZmHOX2a(1)
<------
ggtttcgtatctaagaaaatctaatcgggttttaggttttcgattgggtttccttttctttatcttaaaggcc
aggccaggagaccttattttacccttt
30116200
------->
PIF5
<-------
PIF5
<-----------
RAV1(2)
--------->
At4g35610
<---------
At4g35610
<----------
DOF2
<------
ZmHOX2a(2)
--------->
LBD16
<---------
RVE1(1)
<---------
ANAC58
<---------
AGP1
<------
NtERF2
<----------
DOF2
<---------
ANAC58
--------->
ARR14(2)
<---------
TOE1(2)
<---------
ANAC46
--------->
AGP1
<---------
At4g35610
<-------
GAMYB
--------->
ARR11(3)
--------->
TOE1(1)
<---------
ANAC58
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
ANAC58
<---------
ARR14(2)
<---------
ANAC58
<----------
DOF2
------>
AHL20(2)
<------
NtERF2
--------->
TOE2(1)
<-------
GAMYB
-------
TBP
---------->
DOF2
<---------
HSFB2a(2)
<------
NtERF2
<----
-
GT1
<---------
CCA1(2)
<---------
ANAC58
------>
NtERF2
<-------
----
DOF2
------>
ZmHOX2a(2)
<----------
DOF2
--------->
WOX13(1)
<---------
ANAC46
------>
NtERF2
-------
ttatatacagatctttaagcggcaggggctttctcgtacttttgttaatcacatgggcgcgttgcgttgcgcgtgaaactccctgccaacgtttttttct
30116300
--------->
AHL20(1)
--------->
YAB1
<---------
AHL20(1)
<-----------
GT1
--------->
AHL20(2)
--------->
ARR11(3)
<----------
DOF2
---------->
DOF2
------->
TEIL
------
DOF2
<---------
ICU4
<---------
MYB52(1)
----------->
GT1
----
GT1
<---------
YAB1
------>
NtERF2
<---------
ANAC46
------
--->
ID1
<---------
At4g35610
---------->
ID1
--------->
MYB46(3)
<---------
AHL20(2)
------
tttttcaaatattttgtttatctgataattccttttttgcccccttagtaaagttatctaacaaacaatatgatgtatattatttataaattctgccatg
30116400
<-------
TEIL
<---------
ANAC46
<---------
MYB46(3)
<--
--------->
ALFIN1
<---
<---------
At4g35610
--------->
LBD16
-----
----->
GT1
----------->
RAV1(2)
<---------
ARR14(2)
--------->
YAB1
--->
AtLEC2
--------->
At4g35610
<---------
CCA1(2)
XXXXXXXXXXXXX
taaatc
actagaaaatcgacttgaattcattcatctgaagaacagtggtgcataatactgcataccttcgtattccgaatttcatagtaactagcatgaa
30116500
<-----------
GT1
--------->
MYB52(2)
<-------
MYC3
------>
ZmHOX2a(1)
------->
MYC3
<---------
MYB52(1)
<---------
ICU4
-------
ICU4
--------->
TOE1(3)
<---------
YAB1
---
------
ATHB12
--------->
TOE2(3)
--------->
ICU4
<-----
-->
TEIL
--------->
ARR14(2)
--------->
TOE2(3)
--------->
DAG2
XXXXXXX>
MIR4227
<---------
ARR14(2)
<-----------
GT1
--------->
YAB1
---------->
DOF2
tcattccacatggagccaatagaaaacaaacaaatccttagttacaaaatcgattaaaccgattacattatttgtcataatcgttgaatagaaaaggctt
30116600
<----------
DOF2
<---------
GLK1(1)
<---------
ANAC58
----------->
GT1
----------->
RAV1(1)
<--
<---------
TOE2(3)
<------
MYB46(1)
<---------
ANAC58
--------->
ZAT6
<--
<---------
TOE1(3)
<------
MYB83
----------->
GT1
<---------
At4g35610
---
------>
YAB1
--------->
MYB59
--------->
TOE1(2)
--------->
At4g35610
----------
-----
DOF2
<---------
AtMYB61
<-------
TEIL
--------->
ZAT2
<---------
ANAC46
---
ttataaggttaattcatcaaactggtttggttccaccagaacgtacaaaggctttcccttcagcttacactgccc
ctacatatcgtagacaatgagttat
30116700
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AGI:
At1g80040.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67646.1); contains InterPro domain UBA-like (InterPro:IPR009060)
Range:
from: 30114040
to: 30116173
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g80050.1
Description:
APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase. Identical to Adenine phosphoribosyltransferase 2 (APT2) [Arabidopsis Thaliana] (GB:Q42563;GB:Q39004); similar to APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G11160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44252.1); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase, conserved site; (InterPro:IPR002375); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836)
Range:
from: 30116407
to: 30118217
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.