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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
-----
<------
ZmHOX2a(2)
-----
---------
AGP1
------
-------->
AGP1
-------
-------->
ARR11(3)
-------
-----------
ARR10
<-------
-------->
ARR14(3)
<-------
---------
ARR14(3)
--------
---------
ARR11(3)
---------
---------
ARR14(2)
<---------
GLK1(2)
<-------
TEIL
<-----------
HVH21
-------->
ARR14(2)
--------->
ARR14(2)
--------->
CCA1(2)
<---------
bZIP60(1)
--------
CCA1(2)
<---------
ZAT2
--------->
GLK1(2)
--------->
bZIP60(1)
-------->
ARR10
<---------
At4g35610
------>
ZmHOX2a(2)
<-------
GAMYB
-----
---->
LBD16
--------->
At4g35610
<---------
At4g35610
===================
--->
DEAR3(1)
--------->
ZAT2
--------->
At4g35610
<---------
ICU4
---------
-->
ANAC46
<-----------
HVH21
=============
HOX2a_HOX2a
<---------
YAB1
---------
>
AtMYB61
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
ATHB12
--------->
MYB46(3)
-
ALFIN1
<---------
CCA1(2)
<---------
ARR14(2)
--------->
ARR14(1)
<-----------
RAV1(1)
cagatcttgtctaaacgactcttatctccgtcgcagctcgattcgcatcctgtgatctgagattcgatgtctgtaatcaatgctctgttgtcacaaccaa
29983800
--------->
O2
<---------
O2
->
MYB83
->
MYB46(1)
--->
MYB52(1)
-->
AtMYB61
>
GAMYB
--
MYB55(2)
<---------
YAB1
<-------
GAMYB
--
MYB52(2)
<------
MYB46(1)
----------->
GT1
--------->
MYB52(2)
--
->
MYB46(3)
<------
MYB83
<---------
AtMYB61
--------->
ANAC55(2)
<--
>
ANAC58
<---------
DEAR3(1)
<----------
DOF2
<---------
TOE2(3)
<---------
MYB46(3)
<-----
------>
RAV1(2)
<---------
DREB2C(2)
--------->
TOE2(3)
---------->
DOF2
<---------
ANAC58
<------
NtERF2
=======
RAV
<---------
MYB46(3)
----------------->
AGL1
<---------
ANAC58
--------->
LBD16
>
ANAC58
--------->
ARR14(2)
--------->
DAG2
<-----------
HVH21
<---------
LBD16
<---------
LBD16
>
ANAC46
<---------
ARR14(2)
---------->
DOF2
<---------
LBD16
<----------
DOF2
--------->
MYB46(3)
ctgagacgagacgattcgagtcggtgatgaaaaagggacttcctttaccggtgaggtttaaaggaagaggctttacgggtcgttgagaacagccggagga
29983900
<---------
AHL20(2)
----
--------->
AHL20(2)
--------->
MYB52(1)
--------->
LBD16
<---------
ARR14(2)
<---------
At4g35610
====================
<---------
LBD16
------>
ZmHOX2a(2)
--------->
At4g35610
<------------
AtMYB77
================
HOX2a_HOX2a
--------->
MYB52(1)
--------->
LBD16
<---------
At4g35610
--------->
ARR11(3)
----
--------->
HVH21
<---------
ANAC46
<---------
At4g35610
<---------
ARR11(3)
<---
---------
HVH21
--------->
MYB46(3)
<---------
ETT(2)
<-------
GAMYB
<------
ZmHOX2a(1)
-
ZmHOX2a(1)
<---------
TOE2(3)
<------
ZmHOX2a(1)
<-----------
RAV1(1)
<---
agtcaccggagatttaatgtgaacaactccgtaggaactgtcgatgctgcttcgaagagtgatgctaactaattctctgttgatcttatagaggaacgga
29984000
<---------
AtMYB61
<---------
ZAT2
<---------
AtMYB61
<---------
DEAR3(1)
<---------
LBD16
<---------
At5g28300
--------->
MYB52(1)
<-----------
GT1
<------
ZmHOX2a(1)
<---------
TOE1(3)
--------->
GLK1(2)
<---------
TOE2(3)
<---------
At4g35610
<---------
GLK1(2)
----->
At4g35610
--------->
ALFIN1
--------->
DAG2
=========
HOX2a_HOX2a
<-------
GAMYB
<---------
SPL7
---------->
DOF2
----->
ZAT2
--------->
ALFIN1
--------->
TOE2(1)
---------->
DOF2
------
ZAT2
--------->
LBD16
--------->
ANAC46
<---------
MYB46(3)
<---------
HSFB2a(2)
------
At4g35610
<---------
DEAR3(1)
--------->
TOE1(1)
<---------
SPL7
<----------
ID1
----
gctaaggatttaccggaggtggtgctgttacagacaacctcgtaccagtcgttgagaaaacagtctcttcgtccgattccaaaaggaaaaggaatctcga
29984100
<-------
GAMYB
--------->
At5g28300
----------->
GT1
<-------
TEIL
--------->
CCA1(2)
------------>
MYB.PH3(1)
--------->
ARR14(1)
--------->
ARR11(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(2)
---------->
DOF2
<---------
ALFIN1
--------->
ZAT2
<------
ZmHOX2a(1)
----------->
RAV1(1)
<---------
At4g35610
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
>>>>>>>>>
TBF1
--------->
At4g35610
--------->
YAB1
<---------
YAB1
----->
ARR14(2)
<---------
ANAC55(2)
--------->
ALFIN1
<---------
YAB1
--------->
MYB59
-
ttcctccacagatacggttacatgaagttgaagaagaaggtggagattgagctgtcgttatcaaaggaccattgatgaacagagttaggatagagagtag
29984200
<---------
RAP2.6(3)
--------->
DEAR3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
<---------
At4g35610
<------------
CBF
--------->
ATHB51
--------->
ATHB12
-------->
ATHB1
--------->
ICU4
---------->
DOF2
*
TSS
<---------
ATHB51
----------->
GT1
<---------
AHL20(2)
<----------
DOF2
<---------
YAB1
---------->
GT1
------>
ZmHOX2a(1)
--------->
YAB1
---------->
DOF2
<---------
AHL20(2)
aacagagaaaaaaagtctccttctcttcat
tttttttttctct
aatgacttttatgtatgaaagttctattttagaaattattgagccgtctcgttggaa
29984300
--------->
YAB1
<---------
ICU4
<---------
ATHB12
<------
ZmHOX2a(2)
------------>
CBF
---
<---------
WRKY12
---
--------->
WRKY18(1)
-----
<-----------
HVH21
<--------
HAHB4
--------->
ATHB51
------->
GAMYB
--------->
ICU4
<--------
HAHB4
<<<<<<<<<<<<
WRKY18
<---------
YAB1
<---------
ICU4
--------->
MYB52(1)
<---------
ICU4
--------->
ICU4
<---------
DOF5.7(2)
<-----------
GT1
<---------
YAB1
<---------
WRKY12
--------->
WOX13(1)
--------->
ICU4
<-----
<---------
WRKY38(1)
--------->
YAB1
----------->
GT1
---------
<---------
ARR11(3)
<---------
WRKY38(1)
--------->
ANAC46
<---------
ATHB12
--------->
YAB1
tttggaagttctattttgtcaacggtcaagggatcaattatcattacaagtttacacaacttattgtccaaatcaattttgtaatttttcataattagaa
29984400
<-----------
RAV1(2)
<---------
HSFB2a(2)
------>
YAB1
<---------
LBD16
------>
TOE2(3)
--------->
YAB1
<------
ZmHOX2a(1)
---->
GLK1(2)
<---------
YAB1
<---------
At4g35610
<---------
LBD16
-
----
GLK1(2)
<-----------
GT1
<-----------
GT1
<---------
YAB1
<---------
YAB1
<--
>
YAB1
<-----------
GT1
<---------
AHL20(2)
---------->
DOF2
<---------
GLK1(2)
<---------
tcttaattttagttatacgattttactatcattttttttcccagatgatataacaaagttgattattcacatagattattaatatcaggaaattgactat
29984500
------->
GAMYB
------>
ZmHOX2a(1)
--------->
ANAC58
------>
ZmHOX2a(2)
<
--------->
ANAC46
--------->
YAB1
<------
ZmHOX2a(2)
<-
--------->
ANAC58
--------->
TOE2(3)
<---------
ARR11(3)
<-
------>
MYB83
--------->
ARR11(3)
--------->
ARR14(2)
<-
------>
MYB46(1)
--------->
WRKY45
<---------
ARR14(2)
<-----
--------->
AtMYB61
--------->
WRKY38(1)
--------->
ARR11(3)
<-----
--------->
DEAR3(1)
--------->
ZAT18
<---------
ARR11(3)
<------
ZmHOX2a(1)
--------->
HSFC1(2)
-------->
MYB46(3)
<---------
ZAT14
>>>>>>>>>
WRKY6
---------->
DOF2
<---------
HSFC1(2)
---------
GT1
--------->
YAB1
--------->
DAG2
--------->
MYB52(1)
--------->
HSFB2a(1)
--
GT1
<---------
ATHB12
---------->
DOF2
--------->
TOE2(3)
<----------
DOF2
<---------
HSFB2a(1)
tcaccaacgcaaatcattcatatgtgtgcaatggaaaagttgactatcttaattcttaaactaaaggatccttttcatcagtcgaaatttctaaattatg
29984600
<---------
TOE2(3)
<---------
TOE1(3)
<---------
ICU4
-
-------
GAMYB
--------->
YAB1
--
-----
MYB83
<---------
TOE2(3)
<-------
TEIL
<-
-----
MYB46(1)
<---------
YAB1
<---------
TOE1(3)
---
--------
MYB46(3)
<-----------
GT1
<---------
ARR14(2)
------>
ZmHOX2a(2)
----
YAB1
--------->
YAB1
--------->
ARR14(2)
<---------
ARR11(3)
------
RAV1(1)
--------->
WOX13(1)
--------->
ATHB12
<---------
TOE2(3)
<--
ttggttaaggttccatcacattgtcaattaacataatttctgttaaaccgaaatgaattggtcattgagtcgaatcggattaaggttcaacatgatccat
29984700
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AGI:
At1g79670.1
Description:
RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase. Identical to Wall-associated receptor kinase-like 22 precursor (WAKL22) [Arabidopsis Thaliana] (GB:Q8RY17;GB:Q4JQ55;GB:Q9MA08); similar to WAKL2 (WALL ASSOCIATED KINASE-LIKE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G16130.1); similar to WAKL4 (WALL ASSOCIATED KINASE-LIKE 4), kinase [Arabidopsis thaliana] (TAIR:AT1G16150.1); similar to WAKL5 (WALL ASSOCIATED KINASE-LIKE 5), kinase [Arabidopsis thaliana] (TAIR:AT1G16160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67876.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro dom
Range:
from: 29981618
to: 29984243
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.