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Chromosome 1
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Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<---------
LBD16
------>
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ARR14(1)
<---------
At4g35610
<------
ZmHOX2a(2)
--------->
ZAT2
<---------
ARR14(2)
<---------
ZAT2
--------->
ARR14(2)
--------->
At4g35610
--------->
ARR11(3)
--------->
MYB52(2)
--------->
ARR11(1)
<---------
MYB52(1)
--------->
AGP1
<------
MYB46(1)
----------->
ARR10
--------->
ATHB12
-------
AHL20(2)
<----------
DOF2
<---------
YAB1
----------->
ARR10
<------
------>
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
<------
MYB83
----------->
RAV1(2)
ttaaatttagatccggtttccatttttttgatgactttggtttgttttcctattactaattttgatttggttagctgagagcctgagactgagaggcttt
29847300
<---------
MYB52(1)
--------->
ANAC46
<-----------
GT1
--------->
MYB52(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ALFIN1
<---------
At4g35610
----------->
GT1
<---------
ANAC46
--------->
At4g35610
<---------
ANAC46
<------
NtERF2
--------->
MYB59
<----------
DOF2
--------->
YAB1
<---------
ANAC58
------>
NtERF2
<---------
RAP2.6(3)
<---------
DAG2
----------->
HVH21
<---------
ANAC58
<---------
ARR14(2)
<------
NtERF2
<-----
----
DOF2
<---------
ANAC46
<-----------
RAV1(2)
--------->
ARR14(2)
--------->
RAP2.6(2)
gttgatgacccttttgtcttggagatgacaatgagcatcaaacccaggcgtgttaattaaacggctccgtttacaagttgggccgaaattaggcctcttg
29847400
-------->
HAHB4
<---------
TOE2(3)
<---------
ICU4
--------->
MYB52(1)
--------->
YAB1
<---------
YAB1
--------->
ICU4
--------->
ATHB12
<-----------
GT1
--------->
YAB1
<--------
------
RAV1(1)
--------->
AHL20(2)
--------->
YAB1
<------
NtERF2
ttgggcttaaacctgattagtttttcttataaataacgtttttttttgttttggtaagaataataatgctcatttgtgagtcagtgactagtcgtcgtgc
29847500
<-----------
HVH21
<-----------
TGA1
--------->
O2
<---------
CCA1(2)
<---------
O2
--------->
GLK1(1)
--------->
ANAC58
<---------
LBD16
----------->
HVH21
<<<<<<<<<<
AtbZIP1
--------->
ARR14(2)
<---------
O2
--------->
ANAC58
<---------
ARR14(2)
--------->
AHL20(2)
<---------
ANAC55(2)
--------->
ANAC46
<---------
LBD16
<---------
ATHB12
<---------
ANAC58
--------->
bZIP60(2)
<---------
ANAC58
--------->
WOX13(1)
----------->
GT1
--------->
TGA1a
<---------------
AGL15
------------>
CBF
--------->
ANAC55(2)
<---------
TGA1a
----------------->
AGL1
<---------
ATHB12
<---------
ANAC58
--------->
bZIP60(1)
<---------
ANAC46
--------->
WOX13(1)
-
ANAC46
<---------
bZIP60(1)
<---------
ANAC58
------------>
CBF
-
aataacgtgacaataaacaaaaaatcaaacaaatccaatgccacgtcagacaatacattccaattcgtggaaacgcgcatatcaatcaatgaaatgaatg
29847600
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AtMYB61
--------->
GLK1(2)
----------->
GT1
--------->
ARR11(3)
<---------
GLK1(2)
--------->
TOE2(3)
--------->
AHL20(2)
<---------
DAG2
------>
NtERF2
--------->
YAB1
--------->
YAB1
<------
ZmHOX2a(2)
*
TSS
----------->
HVH21
--------->
TOE1(3)
<---------
AHL20(1)
------>
ZmHOX2a(2)
--------->
YAB1
<---------
At4g35610
----------->
GT1
--------->
DAG2
<---------
ARR11(3)
--------->
ETT(1)
--------->
At4g35610
--------->
DOF2
---------->
DOF2
--------->
CCA1(2)
<----------
DOF2
------>
ZmHOX2a(2)
<---
aataaagaaataatcttagccaaaagtaaatataatatataagatcgatctcacttttggtcg
gaataagaagctattggatcgctgacagataatccga
29847700
--------->
ATHB12
<----------
DOF2
-----
<------
NtERF2
<-----
<---------
DEAR4(2)
<-----
<---------
ORA47(2)
<------
--------->
ALFIN1
<------
<---------
DREB2C(2)
--------
<---------
DEAR3(1)
--------->
MYB46(3)
<-----------
GT1
--------->
DAG2
--------->
WOX13(1)
<------
NtERF2
<-------
TEIL
<------
ZmHOX2a(2)
--------->
DAG2
<------
ZmHOX2a(2)
--------->
LBD16
<---------
GLK1(2)
<---------
ARR11(3)
---------->
DOF2
===================
HOX2a_HOX2a
<----
<---------
ARR14(2)
--------->
ARR11(3)
<----------
ID1
<---------
YAB1
<------
ZmHOX2a(1)
<-----
--------->
ARR14(2)
<------
ZmHOX2a(2)
<---------
ATHB12
<---------
ANAC58
--------->
LBD16
<--------
---
ZmHOX2a(2)
<-----------
HVH21
----------->
TGA1
<---------
ANAC58
<---------
LBD16
-----------
tcagattcagagagttttatcgatcagatcattttttctca
atgacgaaaaaggcggtgcttattgggatcaattacccaggaaccaaggcggagttacg
29847800
<---------
WRKY12
<---------
WRKY38(1)
--------->
DOF5.7(2)
<-----------
HVH21
<---------
ANAC58
<---------
HSFB2a(2)
<---------
ANAC46
<---------
GLK1(2)
<---------
ANAC58
--------->
ANAC58
<-------
TEIL
--------->
ANAC58
---->
LBD16
<---------
RAP2.6(2)
----
ANAC58
--------->
SPL7
----
ANAC58
--------->
SPL1(2)
---
LBD16
--------->
RAP2.6(3)
-----------------
TaNAC69(2)
<---------
SPL7
<------
ZmHOX2a(1)
->
CCA1(2)
<---------------
AtSPL3
----
-----
LBD16
<---------
TOE1(2)
--------------->
AtSPL3
<-------
----
ANAC46
<---------
TOE2(2)
--------->
WRKY12
--------->
HSFB2a(2)
--------
-
ARR14(2)
<-------
TEIL
--------->
WRKY38(1)
--------->
LBD16
------>
NtERF2
<
>
ARR10
<---------
DOF5.7(2)
<---------
ANAC46
<----------
DOF2
<---------
YAB1
------->
TEIL
gggatgcgtcaacgatgttcgtcgtatgtacaaatgtctcgttgaacggtacggcttctccgaggagaacatcaccgttctcatcgacaccgatgaatcc
29847900
------>
NtERF2
<---------
DEAR3(1)
----------->
HVH21
--------->
DEAR3(1)
<---------
ZAT18
--------->
ATERF1(1)
------>
NtERF2
--------->
LBD16
<------
NtERF2
------>
NtERF2
--------->
DEAR3(1)
<---------
LBD16
<---------
DEAR3(1)
--------->
GLK1(2)
--
--------->
ATERF1(1)
<---------
ARR14(2)
<---
--------->
LBD16
--------->
ARR14(2)
------
------>
NtERF2
--------->
HSFB2a(1)
------
--------->
MYB46(3)
--------->
ARR14(2)
------
--------->
ARR14(2)
<---------
ARR14(2)
------
<---------
At4g35610
--------->
ANAC46
<-----------
ARR10
<---------
ANAC58
<--------
--------->
At4g35610
------->
GAMYB
------->
TEIL
<---------
LBD16
<--------
--------->
ANAC46
<---------
ARR14(2)
<---------
ARR11(1)
<---------
ANAC58
<---------
ZAT18
-->
ZmHOX2a(1)
--------->
HSFB2a(1)
--------->
GLK1(2)
<------
NtERF2
--------->
ZAT14
--
ARR14(2)
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ZAT14
<
->
ARR14(2)
--------->
ANAC58
<---------
At4g35610
----------------->
AGL1
--------->
ZAT14
<
---------
REM1(2)
<---------
HSFB2a(1)
--------->
ARR11(3)
<---------
ARR14(2)
---------->
ID1
<---------
ZAT14
tctactcagcctactggcaagaacatccgccgcgcgcttgctgatctcgtcgaatctgccgattccggcgacgttcttgtcgttcattacagtggacacg
29848000
<------
NtERF2
<---------
At4g35610
------>
NtERF2
--------->
ATERF1(2)
<---------
RAP2.6(2)
<---------
ATERF1(2)
<---------
LBD16
<---------
ANAC58
<---------
ANAC58
--------->
ATERF1(1)
--------->
RAP2.6(3)
<---------
ATERF1(1)
<--------
P
------->
SPL7
------
SPL7
--------->
At4g35610
--->
ANAC58
----------->
RAV1(2)
--->
ANAC58
<---------
ZAT2
<---------
YAB1
--->
ANAC55(1)
--------->
GLK1(2)
--->
ANAC46
--------->
ZAT2
<---------
ANAC46
-
ARR14(2)
--------->
LBD16
<---------
ANAC58
-
REM1(2)
<---------
RAP2.3(2)
<---------
ANAC58
---------
TOE1(1)
--------->
MYB52(2)
<-------
---------
TOE2(1)
----------->
HVH21
<---------
ZAT14
------->
TEIL
<--------
gtacgaggttgccggctgagactggtgaagacgatgacactggtttcgacgagtgtattgttccttgcgacatgaatctgattactg
gtgagttttatct
29848100
--------->
ICU4
--------->
YAB1
<---------
YAB1
------>
ZmHOX2a(1)
<<<<<<<<<
ARR1
<------
ZmHOX2a(2)
<<<<<<<<<
ARR2
<---------
ARR11(3)
--------->
ARR11(3)
----------->
HVH21
<---------
ARR11(3)
=================
HOX2a_HOX2a
==================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
At4g35610
--------->
ATHB12
--------->
ARR14(2)
--------->
GLK1(2)
<---------
WOX13(1)
<---------
ARR14(2)
<---------
GLK1(2)
<----------
DOF2
--------->
ARR14(2)
<---------
ICU4
<---------
YAB1
----
----
GT1
--------->
ATHB12
------>
ZmHOX2a(2)
--------->
YAB1
--------->
DAG2
------
---
GT1
<---------
YAB1
<---------
ARR14(2)
--------->
YAB1
---------->
DOF2
<-----
ctctcttttttttgtgattgatggctacgatctgacgatcctataataatcagaagaatcttttgatggaaaagttttgattttttgtagaattgttgat
29848200
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AGI:
At1g79340.1
Description:
ATMC4 (METACASPASE 4); caspase/ cysteine-type peptidase. similar to AMC6/ATMC5/ATMCP2B (TYPE-II METACASPASES), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G79330.1); similar to latex-abundant protein [Hevea brasiliensis] (GB:AAD13216.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600)
Range:
from: 29847664
to: 29849531
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.