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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
<---------
O2
--------->
O2
--------->
TGA1a
<---------
TGA1a
=================
bZIP_DOF
=================
bZIP_DOF
<------
NtERF2
------>
NtERF2
--------->
At4g35610
----------->
HVH21
--------->
RAP2.3(3)
--------->
DEAR3(1)
--------->
DEAR3(2)
--------->
GLK1(2)
--------->
ATERF1(1)
<---------
ZAT14
<---------
ARR14(2)
<---------
At4g35610
<---------
ZAT2
<---------
GLK1(2)
--------->
At4g35610
---------->
DOF2
<------
ZmHOX2a(1)
>>>>
tcgacgattctgtaacttcacttgagccgacgagtctttagtagcttcagaggtttgaaagcgagcacagaggatgaagacatagaagacgaagacgaag
29122000
--------->
ANAC58
--------->
ANAC58
<---------
DAG2
--------->
YAB1
<------
NtERF2
<-------
TEIL
<----------
DOF2
--------->
ARR14(2)
--------->
ANAC58
---------->
DOF2
<---------
At4g35610
------>
ZmHOX2a(1)
---------->
DOF2
--------->
AtMYB61
<---------
TOE2(3)
<---------
LBD16
<-----------------
AGL1
--------->
ARR14(2)
<---------
TOE1(3)
<----------
DOF2
<-----------------
AGL3
<---------
ARR14(2)
---------->
DOF2
<---------
At4g35610
<---------
ICU4
--------->
ANAC58
------>
MYB83
<---------
TOE2(3)
>>>>>
TBF1
<----------
DOF2
<---------
ARR14(2)
<------
NtERF2
------>
MYB46(1)
<------
aagaagtaaaggtttcttctttgctgcttattcggattcatcat
ctcctctttttggcccccaagaaagcgaaaccaaatcccaccaaaaaggtttcttt
29122100
--------
--------
<------
ZmHOX2a(1)
<---------
CCA1(2)
--------
<----------
DOF2
<---------
At4g35610
--------->
AHL20(2)
--------->
ZAT6
--------->
DAG2
--------->
ZAT2
--------->
ARR14(2)
------>
ZmHOX2a(2)
---------->
DOF2
--------->
At4g35610
<---------
ARR14(2)
--------->
GLK1(1)
----
DOF2
----------->
RAV1(1)
<----------
DOF2
==================================
HOX2a_HOX2a
tttgacacagggcaacaaaaaggaggctttttctttgtagaattgctgctcccttataggagtgagtatttgtttatatatctgatctctctcacactca
29122200
<------------
CBF
--------------->
AGL15
<---------------
AGL15
----------->
GT1
<---------
At4g35610
--------->
ANAC58
--------->
ANAC58
--------->
SPL7
<---------
ZAT2
<---------
MYB52(1)
-----
--------->
At4g35610
--------->
ANAC55(2)
------->
GAMYB
<---------
ANAC46
--------->
ANAC46
<---------
ALFIN1
<---------
ANAC58
<---------
HSFB2a(2)
--------->
ANAC46
<---------
ANAC58
<----------
DOF2
--------->
At4g35610
------->
GAMYB
<----
->
ANAC58
--------->
ZAT2
<---------
GLK1(1)
--------->
DEAR3(1)
--
->
ANAC46
<---------
At4g35610
<---------
LBD16
<---------
GLK1(2)
<----
->
ANAC58
----------->
RAV1(1)
*
TSS
--------->
LBD16
---------->
DOF2
--------->
MYB52(1)
atttcgtgcaacttgcagcagaggtttctttg
agttcccgtaagctaaattgagaaacttggcatttggctaaaagaaactcaacgcccaacgctcacta
29122300
<------
ZmHOX2a(1)
------>
MYB46(1)
------>
MYB83
<------
NtERF2
------>
NtERF2
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
------->
MYC3
------->
PIF5
<-------
MYC2
------->
MYC2
<-------
PIF4
<-------
PIF5
------>
ZmHOX2a(2)
------->
PIF4
<---------
WOX13(1)
<------
ZmHOX2a(2)
<-------
MYC3
<------------
CBF
--------->
ARR14(2)
---------->
DOF2
==============================
HOX2a_HOX2a
--------->
REM1(2)
=============================
HOX2a_HOX2a
<---------
ANAC58
-------->
P
<---------
ARR14(2)
<---------
ANAC46
------>
NtERF2
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ANAC58
--------->
DEAR3(1)
<---------
ARR11(3)
<---------
ARR14(2)
---->
ZAT14
--------->
ANAC58
------->
GAMYB
<---------
ARR11(3)
-----
ZAT18
--------->
ANAC46
--------->
MYB52(1)
------------>
CBF
------->
ANAC46
--------->
ANAC58
<---------
MYB59
--------->
PCF2
------>
NtERF2
-----
ZAT14
<---------
ATERF1(1)
---------->
DOF2
<---------
ZAT18
cacttagcgtgtaaagcacgcgccaaccaggattgactcaaaggcctaacgatcttcaaatgtacagggcccaatatactcggcccataaactctaaaac
29122400
----------->
RAV1(2)
<---------
At4g35610
<-------
TEIL
--------->
DOF5.7(2)
----------->
HVH21
<---------
ANAC58
<------
MYB46(1)
<---------
ANAC46
<------
MYB83
<---------
ANAC58
<---------
ANAC58
----------->
HVH21
<---------
ANAC58
<------
NtERF2
--------->
YAB1
<---------
MYB46(3)
--------->
TGA1a
<---------
ICU4
--------->
MYB55(2)
-----
--------->
ANAC55(2)
<---------
ATHB12
--------->
ALFIN1
======
<---------
ANAC58
<---------
ZAT2
<---------
ARR14(2)
<-----
<---------
TGA1a
--------->
At4g35610
--------->
ARR14(2)
<------
<---------
ANAC58
--------->
ZAT2
<---------
YAB1
--------->
ATHB12
-------
<---------
ANAC55(2)
<---------
At4g35610
<---------
ARR11(3)
<------
ZmHOX2a(2)
------>
NtERF2
*
TSS
--------->
ICU4
<---------
YAB1
--------->
AGP1
--------->
MYB46(2)
<-----------
RAV1(2)
--------->
ARR11(3)
<---------
ATERF1(1)
=====
tattcaaatgttaggcgcgtgacgttcacctgtga
atcagctgatagaaatcattatccaatatccagttatgagtgggtgactccaaatagatccaact
29122500
<
<-
--
--
---
---
-------->
ABF1
---
------->
MYC2
<--
<-------
MYC2
---
------->
MYC4
---
------->
MYC3
----------->
HVH21
---
<-------
MYC4
--------->
ANAC55(2)
<--
<-------
MYC3
<---------
ANAC55(2)
---
--------->
TGA1a
<---------
TGA1a
---
--------->
ANAC55(2)
<---------
ANAC58
----
<--------
ABF1
--------->
TGA1a
----
<---------
TGA1a
<-------
TEIL
----
--------->
ATHB12
<------
NtERF2
----
--------->
ATHB51
------>
NtERF2
----
-------->
ATHB1
<---------
ALFIN1
----
<---------
YAB1
<---------
ARR14(2)
----
--------->
ANAC58
------>
NtERF2
<---------
SPL7
-----
--------->
ANAC58
<----------
DOF2
--------->
LBD16
------->
TEIL
-----
-->
GAMYB
=================
bZIP_DOF
--------->
ARR14(2)
------------------>
SPL14
-----
========================
MYC_MYB
<---------
ARR14(2)
--------->
DEAR3(1)
<----
-------
AtMYB77
<---------
ANAC55(2)
<---------
ANAC46
--------->
ARR14(2)
-----
---
ZAT2
<---------
O2
--------->
LBD16
<---------
MYB52(1)
<----
-->
ZAT2
--------->
O2
------>
NtERF2
--------->
DEAR3(1)
<---------
ANAC58
------
========================
MYC_MYB
<---------
LBD16
--------->
ANAC46
--------->
SPL7
------
ggcaacgcattattgacacgtgtcttttcatttctcttcttccggcgttttctctccgccgtttcgccaccgtacgtgaca
atgtctgtttctctctccg
29122600
<---------
ALFIN1
----------->
HVH21
<------
NtERF2
------
NtERF2
<---------
MYB52(1)
--------
ATERF1(1)
<-----------
TGA1
------->
ABI4(1)
------>
NtERF2
---->
NtERF2
<-----------
HVH21
------>
DREB2C(2)
<---------
ATERF1(1)
------>
RAP2.3(2)
--------->
ANAC46
------>
DEAR3(1)
--------->
RAP2.3(2)
-------
ALFIN1
--------->
bZIP60(1)
------>
ATERF1(2)
--------->
ATERF1(2)
------>
RAP2.6(2)
--------->
RRTF1(3)
------>
RRTF1(2)
<---------
ATERF1(2)
-------
ATERF1(2)
--------->
RAP2.6(2)
------>
RAP2.3(3)
--------->
O2
------>
RRTF1(3)
--------->
RRTF1(2)
----->
RAP2.3(1)
--------->
RAP2.3(3)
----->
RAP2.6(1)
--------->
DEAR3(1)
----->
RRTF1(1)
--------->
RAP2.3(1)
----->
ERF1
--------->
RRTF1(1)
----->
ORA47(2)
<------
NtERF2
----->
DEAR4(2)
<---------
ATERF1(1)
<-------
GAMYB
----->
ATERF1(1)
------>
NtERF2
<---------
ANAC58
---->
At4g35610
--------->
LBD16
<---------
MYB46(3)
---->
ABI4(1)
--------->
ANAC46
<---------
ANAC58
---->
LBD16
--------->
DEAR3(1)
<-----------
HVH21
-----
ATERF1(1)
<----------
DOF2
----------->
RAV1(2)
->
NtERF2
<---------
GLK1(2)
--------->
ERF1
<-----------
HVH21
-----
At4g35610
----------->
RAV1(1)
<---------
ALFIN1
--------->
TOE1(1)
--------
--->
DEAR3(1)
<---------
ALFIN1
<---------
LBD16
--------->
TOE2(1)
------>
ZmHOX2a(1)
--->
ANAC46
------>
ZmHOX2a(1)
--------->
MYB46(3)
------>
ZmHOX2a(1)
<----------
DOF2
<-
ccgcctctcacttactctgttcctccaccagagtctctctttcccccgccgtcacctcttcgtcctcgtcccctgtcgttgctctttcttcctctacatc
29122700
<---------------
AtSPL3
--------------->
AtSPL8
<---------
HSFC1(2)
<---------
ANAC58
--------->
HSFB2a(1)
<---------
ANAC58
<---------
DAG2
--------->
HSFC1(2)
------>
ZmHOX2a(1)
--------->
SPL7
----------->
GT1
<---------
GLK1(2)
------>
ZmHOX2a(1)
--------------->
AtSPL3
->
REM1(1)
<---------
HSFB2a(1)
<---------
ALFIN1
<-----------
RAV1(2)
<----------
DOF2
--------
ALFIN1
<-----------
HVH21
------>
ZmHOX2a(1)
<----------
DOF2
--------->
YAB1
gccacattctcttggaagcgtcgcatcttcttctctgtttcctcactcctccttcgtgcttcag
gtattcgtacttcattcatactttttgtaaatttct
29122800
<------
<------
-------
<-----------
GT1
------->
TEIL
--------->
ATHB12
<-----------
RAV1(1)
<----------
ID1
<---------
YAB1
<---------
At4g35610
<------
ZmHOX2a(2)
<------
ZmHOX2a(1)
------>
NtERF2
<---------
ATHB12
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-------
GAMYB
--------->
TOE1(2)
<-------
PIF5
<---------
At4g35610
<-----------
RAV1(1)
--------->
TOE2(2)
------->
PIF5
<---------
RAP2.6(2)
--------->
YAB1
<---------
MYB52(1)
==========================
HOX2a_HOX2a
--------->
ALFIN1
-------
ctccgaacataacattttctgttgattttag
aaaaaacatccgatcaatgggacgagcacgaggatgatttcaccaaaatgtgccgcttctgatgcagct
29122900
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AGI:
At1g77480.1
Description:
nucellin protein, putative. similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61887.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461)
Range:
from: 29119452
to: 29122232
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g77490.1
Description:
TAPX; L-ascorbate peroxidase. Identical to L-ascorbate peroxidase T, chloroplast precursor (APXT) [Arabidopsis Thaliana] (GB:Q42593;GB:Q9CAQ6); similar to SAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT4G08390.2); similar to SAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT4G08390.1); similar to thylakoid-bound ascorbate peroxidase [Brassica oleracea] (GB:BAD14931.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016)
Range:
from: 29122436
to: 29125109
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.