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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
MYB83
------>
MYB46(1)
<---------
CCA1(2)
--------->
At4g35610
<---------
At4g35610
<---------
REM1(1)
--------->
ANAC55(2)
-------
GAMYB
<---------
ANAC55(2)
--------->
TOE1(2)
-->
ZmHOX2a(1)
<-----------
GT1
--------->
ARR14(2)
>
ANAC58
--------->
ARR11(3)
<---------
ARR14(2)
---------->
DOF2
>
ANAC58
<---------
ARR11(3)
<---------
ALFIN1
---------->
DOF2
---
>
bZIP60(2)
---------->
TaMYB80
----------->
RAV1(1)
<------
ZmHOX2a(2)
--------->
AtLEC2
---------
>
ANAC46
<------
ZmHOX2a(1)
--------->
MYB46(3)
<---------
TOE1(2)
<-------
TEIL
<-------------
tccgttgtagctgcaggaatatcac
ctatctcatccaacacatacaaatccttggatcaacttcaactaaaattcatggaaagaaagtagtcgatacagc
28146000
<-
<-
<-
-----
---------
<--------
<---------
ALFIN1
<--------
<-----------
ARR10
------>
ZmHOX2a(2)
<---------
YAB1
--------->
ARR11(3)
<---------
AGP1
-----
<---------
ARR11(3)
--------->
ANAC58
<---------
CCA1(2)
<--
--------->
ARR11(3)
----------->
GT1
<---------
ANAC58
<----
------->
DOF2
<------
ZmHOX2a(1)
<---------
ANAC46
-------
->
DOF2
--------->
ICU4
--------->
ANAC58
---------->
DOF2
<---------
ANAC58
<------
--------
WRI1
<---------
ZAT6
<---------
ARR11(3)
----------->
GT1
<-----------
GT1
---------
aaaagatagtcatgaatagagttaggagcaagtaatatctccacatcgaactaagaagtaaacaaaagtatacatttttacttggatctaatcgagctgt
28146100
--------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(2)
<------
NtERF2
--------
ANAC58
--------
ANAC46
--------->
ARR14(2)
--------
ANAC58
<---------
GLK1(2)
------>
HVH21
<---------
ARR14(2)
>
ZAT2
<------
ZmHOX2a(2)
-
ZAT2
<---------
ARR14(2)
-
At4g35610
------->
GAMYB
---->
ALFIN1
--------->
MYB46(3)
-------
LBD16
--------->
At4g35610
--------->
ARR14(1)
-----
DEAR3(1)
<---------
ATHB12
--------->
MYB52(1)
<------
NtERF2
-->
ALFIN1
--------->
DAG2
--------->
ZAT2
------>
ZmHOX2a(2)
------>
NtERF2
-----
RAV1(1)
----------->
HVH21
<-----------
GT1
<--------
>
At4g35610
---------->
DOF2
--------->
ZAT14
<---------
TOE2(3)
--------->
DEAR3(1)
ggcggattttgagaaaagcgcttac
caatgacctcttcagtagctggattaacgatcgggattcgcttcttcaagatgggttctctccattcgccgtcga
28146200
<-
<-
--
<---------
At4g35610
--
<------
NtERF2
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC46
<---------
ARR14(2)
<---------
ANAC58
<---------
At4g35610
<-------
<------
NtERF2
<---------
ANAC46
--------->
At4g35610
<-------
<---------
ANAC58
>>>>>>>>>>>>>>>>>
LFY
<---------
LBD16
<---------
At4g35610
<-------
<---------
ANAC58
<---------
GLK1(2)
<---------
At4g35610
--------->
At4g35610
<-------
TEIL
--------->
ZAT2
--------->
At4g35610
--------->
At4g35610
<-----------
RAV1(1)
<---------
ARR14(2)
--------->
At4g35610
--------->
ARR14(2)
<---------
GLK1(1)
<---------
RAP2.6(2)
--------->
ARR14(2)
---
HVH21
<--------
P
<---------
ARR14(2)
------->
TEIL
--------->
LBD16
<---------
ZAT2
<---------
ANAC46
tgaatagctggcgagtaggcatcggaatcgccat
tgttcttatctgaatctagagctccggagatggagttgctgctgctcactggatcgtggattcgtg
28146300
------->
TEIL
<---------
ALFIN1
--------->
ZAT14
<---------
ZAT14
<---------
ZAT18
--------->
DEAR3(1)
--------->
CCA1(2)
<---------
ANAC46
--------->
ARR14(2)
--------
ZAT18
<---------
ARR14(2)
--------
ZAT14
--------->
ARR11(3)
<---------
ATHB12
------->
ZAT18
<---------
ARR11(3)
<---------
TOE2(3)
---------->
DOF2
------->
ZAT14
--------->
ARR11(1)
<----------
DOF2
<----------
ID1
<------
--
ANAC46
--------->
ANAC46
<---------
ANAC58
<------
ZmHOX2a(2)
<------
--
ANAC58
--------->
ANAC58
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
--
ANAC58
--------->
ANAC58
<----------
DOF2
--------->
ZAT6
<------
ZmHOX2a(1)
<----------
DOF2
gtgcaccgtgcacgcacttcaagatttggactttataagtagctttcactaatgaagaagagtaggaggatcaaaacgaaaaagcctctcttttttcctt
28146400
<------
ZmHOX2a(2)
--------->
AGP1
------>
MYB83
-------->
P
--------->
MYB52(1)
------>
MYB46(1)
--------->
MYB55(1)
--------->
AtMYB61
<---------
MYB111(2)
--------->
YAB1
--------->
MYB46(3)
--------->
AHL20(2)
*
TSS
<---------
MYB55(2)
<-----------
GT1
<---------
AHL20(2)
----------->
HVH21
<---------
ICU4
<---------
ICU4
<----
<---------
At4g35610
--------->
YAB1
--------->
ICU4
<-----
--------->
ZAT2
<---------
ARR11(3)
<---------
YAB1
<---------
ATHB51
----------->
RAV1(2)
<---------
DAG2
<-----------
GT1
<---------
AHL20(2)
--------->
At4g35610
<----------
DOF2
<----------
DOF2
--------->
AHL20(2)
---
ANAC58
<---------
MYB111(1)
<---------
YAB1
--------->
AHL20(2)
---
ANAC58
--------->
DEAR3(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
--
GT1
<---------
MYB46(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
-------
gttct
gctgacaccaaccagatcaactttttttaattataactcttttactaatctaattaaaaatgtgtatttagttccaaaataattaaaacagagat
28146500
<----
<---------
<---------
--------->
ANAC46
--------->
ANAC58
<-----------
GT1
------>
ZmHOX2a(2)
<---------
RVE1(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
AGP1
<----
----------------------->
TaNAC69(2)
--------->
AHL20(1)
================
HOX2a_HOX2a
--------->
ARR11(3)
---------->
DOF2
<----------
DOF2
--------->
YAB1
<---------
AHL20(1)
<---------
AHL20(2)
<---------
ARR11(3)
--
ZmHOX2a(2)
--------->
AHL20(2)
----------->
GT1
<------
ZmHOX2a(1)
--------->
ANAC58
----
ARR11(3)
--------->
AHL20(2)
---------->
DOF2
=================
HOX2a_HOX2a
-->
GLK1(1)
<---------
YAB1
--------->
YAB1
--------->
YAB1
<---------
GLK1(1)
caaattttcatattatgaacaaaaatatatagaaattagaagaactaaaaatcatacacaaagttaattagaaaaggattagagatctttaaacgtcact
28146600
<---------
AHL20(2)
--------->
ARR11(3)
--
<---------
ARR11(3)
------>
ZmHOX2a(1)
<---------
ANAC55(2)
--------->
TOE2(3)
----------->
GT1
--------->
AHL20(2)
---------------
------
DOF2
<---------
YAB1
--------->
ANAC55(2)
<---------
ANAC46
---
--
TGA1
--------->
CCA1(2)
--------->
DAG2
<---------
AHL20(1)
---------------
--
HVH21
---------->
ID1
----------->
GT1
---------->
DOF2
--------->
AHL20(1)
---------------
-----
DAG2
<---------
AtLEC2
--------->
YAB1
----------->
GT1
----------->
GT1
---
tttttgttttgtttttttgcaagataagaggtgaatcaaaattgaaaaaggaaataaacatgtaatatattccaaacgttgagtaaaatcctaaaccggc
28146700
--------->
LBD16
<---------
ANAC55(1)
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
HSFB2a(2)
<---------
ARR14(2)
<------
MYB83
<------
MYB46(1)
--------->
MYB59
<---------
YAB1
------->
ICU4
--------->
AHL20(2)
-->
AGL2
<---------
ANAC46
------>
ANAC58
--------->
TOE1(3)
-->
AGL1
<---------
ANAC58
<---------
ICU4
-->
AG
--------->
ARR14(2)
<----------
DOF2
<-----------
GT1
------>
ZmHOX2a(1)
------>
ANAC58
--------->
TOE2(3)
<---------
ANAC46
------>
ZmHOX2a(1)
--------->
TOE2(3)
aaggattaggttccgtaaaccttataaatagagagttcgtatagtctttgttttcctcatcaatactcaaataactcatcgacttatattcctcaatctt
28146800
<---------
HSFB2a(1)
--------->
HSFB2a(1)
--------->
HSFC1(2)
<---------
ICU4
<---------
HSFC1(2)
<---------
ATHB51
--------->
ARR14(2)
<----------
DOF2
------>
ZmHOX2a(2)
<-----------
ARR10
--------->
ICU4
<---------
WOX13(1)
<---------
ARR14(2)
<---------
YAB1
<----------
DOF2
--------->
ARR11(3)
<---------
ICU4
------>
ZmHOX2a(2)
<---------
ARR11(3)
--------->
YAB1
<---------
ARR11(3)
--------->
AtMYB61
------>
ZmHOX2a(1)
--------->
At4g35610
--------->
ARR11(3)
<---------
ETT(2)
--------->
GLK1(2)
--------->
ICU4
--------->
TOE2(3)
<---------
YAB1
------>
NtERF2
<---------
GLK1(2)
<---------
YAB1
<---------
At5g28300
ccttcttcgattttcttaatttgtgatcttttgatcgataatggcgaccacaacaacaagaatcttctccttcatgctcatgatgatgagcttcaccgtt
28146900
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AGI:
At1g74920.1
Description:
ALDH10A8 (Aldehyde dehydrogenase 10A8); 3-chloroallyl aldehyde dehydrogenase. Identical to Betaine aldehyde dehydrogenase 1, chloroplast precursor (ALDH10A8) [Arabidopsis Thaliana] (GB:Q9S795;GB:Q56ZQ8); similar to ALDH10A9 (Aldehyde dehydrogenase 10A9), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G48170.1); similar to betaine-aldehyde dehydrogenase [Chorispora bungeana] (GB:AAV67891.2); similar to putative aminoaldehyde dehydrogenase [Pisum sativum] (GB:CAC48393.1); similar to betaine-aldehyde dehydrogenase [Gossypium hirsutum] (GB:AAR23816.2); contains InterPro domain Aldehyde/histidinol dehydrogenase; (InterPro:IP
Range:
from: 28142670
to: 28146405
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.