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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
------>
NtERF2
--------->
RAP2.3(2)
--------->
RAP2.3(3)
------->
TEIL
--------->
DEAR3(1)
--------->
GLK1(2)
<---------
ALFIN1
--------->
RAP2.6(2)
<---------
KAN4(2)
<---------
SPL7
--------->
RAP2.3(1)
<---------
ARR14(2)
<---------
ZAT14
--------->
ANAC58
--------->
ARR14(2)
<---------
ABI4(2)
--------->
ANAC58
---------->
TaMYB80
--------->
ZAT14
--------->
ANAC46
--------->
TOE1(2)
--------->
DEAR3(1)
<---------
MYB52(2)
<---------
ANAC55(2)
--------->
ANAC46
<---------
RAP2.6(3)
<
--------->
ANAC55(2)
<---------
At4g35610
--------->
RAP2.6(2)
<---
<---------
ANAC58
--------->
ZAT2
--------->
ABI4(1)
<---------------------
WRI1
-
<---------
ANAC55(1)
--------->
At4g35610
--------->
At4g35610
<--------
<---------
ANAC58
<---------
At4g35610
<---------
AtLEC2
<------
ZmHOX2a(1)
--------->
DEAR3(2)
----->
ICU4
<---------
AtLEC2
<---------
At5g28300
--------->
MYB59
---------->
DOF2
<---
tgaatacgtgagaatatgcatgtagcagctaagaactcaccgcaccggtgcaaggcgaaactcgaggttaggaagccgaaacgaacaagccgccgttttc
26765600
<---
<---------
MYB52(1)
--------->
DEAR3(1)
<---------
ANAC58
<---------
ATERF1(2)
<---------
ANAC58
--------->
ATERF1(2)
---------
STY1(2)
<---------
AtMYB61
<---------
LBD16
------
ANAC58
--------->
ALFIN1
--------->
MYB52(1)
-------->
STY1(2)
<---------
ANAC58
<------
ZmHOX2a(2)
-
MYB52(1)
<---------
ANAC58
<----------
DOF2
----
------
ANAC58
--------->
CCA1(2)
------>
ZmHOX2a(1)
<----------
DOF2
<-----------
HVH21
cttgctagcctcatccataagcttcttccatgatacgagcgtggtggtctcctattggagaagttcgactttaagtactttccgatcaccggcagtcaat
26765700
--------->
LBD16
----------->
HVH21
--------->
GLK1(2)
<---------
ARR14(2)
<------
MYB83
--------->
ARR14(2)
<-----------
GT1
<------
MYB46(1)
<---------
ARR14(2)
--------->
ARR11(3)
<--------
P
<---------
GLK1(2)
<---------
ARR11(3)
---------->
DOF2
<---------
MYB52(1)
----------------->
AGL1
----------->
HVH21
--------->
ARR14(2)
<---------
DEAR3(2)
<---------
ZAT14
----------->
TGA1
<---------
GLK1(2)
<---------
MYB46(3)
--------->
ZAT14
<------
ZmHOX2a(1)
------
ARR11(3)
--------->
ANAC46
<---------
WRKY12
<---------
ZAT6
<-----------------
AGL1
----->
ARR11(3)
<-----------
GT1
<-----------
HVH21
<-----------
HVH21
<---------
GLK1(1)
atctctgacgagattttacacgattcgccgaaagttggaccgtcatcggttgggaccgggtcagagttagactctgtagagacccgaatcggagaggaag
26765800
<---------
ANAC58
<-------
TEIL
<---------
ZAT2
--------->
ZAT2
--------->
ANAC58
<---------
At4g35610
--------->
ANAC46
<-------
MYC3
<---------
ANAC46
--------->
ANAC58
------->
MYC3
<---------
ANAC58
<---------
YAB1
--------->
ANAC58
<---------
ARR14(2)
------------>
CBF
--------->
ANAC55(2)
------------>
CBF
---------->
DOF2
--------->
At4g35610
<--------
<---------
ATHB12
--------->
YAB1
---------->
DOF2
--------->
ANAC58
<---------
ZAT14
------>
ZmHOX2a(1)
tgaaggcccatgaataagcccatacaattacaattccaaggaaaagaagtatacaaagacacgttttggagctgcgtaaactgtccccataatcctttgc
26765900
--------->
ANAC46
--------->
LBD16
--------->
ANAC58
--------->
LBD16
------>
NtERF2
<---------
HSFB2a(2)
--------->
LBD16
--------->
HSFB2a(2)
--------->
LBD16
<------
ZmHOX2a(2)
<---------
LBD16
--------->
LBD16
<---------
LBD16
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
--------->
ARR11(3)
<---------
LBD16
<---------
ANAC55(2)
<---------
ARR14(2)
<---------
ANAC46
<---------
ARR11(3)
--------->
MYB46(3)
--------->
ANAC58
<---------
TOE1(3)
<---------
ANAC55(1)
-----------
--
DOF2
--------->
ARR14(2)
<---------
TOE2(3)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
catcaacaacttcgattccggggactacaagcctctgtcttctctctcgtttagggttttattccaaaattccgtgcttcgatcccgaagatcagaaaaa
26766000
------>
NtERF2
--------->
RAP2.6(2)
--------->
DEAR3(1)
<---------
ZAT14
--------->
MYB46(3)
--------->
ZAT14
--------->
ATERF1(1)
--------->
ALFIN1
--------->
GLK1(2)
--------->
ANAC46
--------->
LBD16
--------->
RAP2.3(2)
------>
ZmHOX2a(2)
------>
NtERF2
--------->
ERF1
<---------
GLK1(1)
<---------
DEAR3(1)
<------
NtERF2
------->
TEIL
---------->
DOF2
<---------
LBD16
<---------
At4g35610
<---------
ARR11(3)
--------->
ATERF1(1)
--------->
RAP2.3(1)
<---------
AGP1
--------->
DAG2
--------->
SPL7
--------->
At4g35610
<---------
ARR14(2)
<---------
ATERF1(1)
--------->
LBD16
--------->
ARR14(2)
>
GT1
------>
NtERF2
<---------
MYB52(1)
--------->
ARR11(3)
<---
atgggtgatgagattgtgcctccggcgaatcagttagccgccgataacttggaaaacgatggatctacggtgcagaaagcgcaattttcagacagggttc
26766100
--------->
At4g35610
<---------
At4g35610
<-----------
ARR10
<------
NtERF2
--------->
LBD16
<---------
ANAC46
<---------
DEAR3(1)
--------->
ALFIN1
--------->
At4g35610
<---------
At4g35610
--------->
ATERF1(1)
<---------
ABI4(1)
<---------
LBD16
<------
NtERF2
<---------
RAP2.3(1)
<------
MYB46(1)
<---------
DEAR4(2)
<------
MYB83
<---------
ATERF1(1)
----------->
GT1
<---------
ORA47(2)
<---------
ANAC46
------>
NtERF2
<------
MYB83
<---------
RRTF1(1)
<------
MYB46(1)
<---------
ERF1
--------->
MYB55(2)
--------->
ATERF1(2)
<---------
MYB46(3)
<---------
ATERF1(2)
--------->
ALFIN1
<---------
RAP2.3(2)
<---------
AtMYB61
<---------
RAP2.3(3)
--------->
GLK1(2)
<---------
RAP2.6(2)
<---------
GLK1(2)
<---------
DEAR3(1)
----------->
ARR10
<---------
RRTF1(3)
----------->
GT1
<--------
P
<---------
LBD16
<
<---------
DREB2C(2)
--------->
DAG2
--------->
MYB111(2)
<-
<---------
RRTF1(2)
<---------
WRKY38(1)
<-------
GAMYB
--------->
LBD16
<-
<---------
ORA47(1)
--------->
WRKY18(1)
--------->
MYB52(2)
---------->
DOF2
------
YAB1
<---------
ABI4(1)
<-----------
HVH21
<---------
MYB52(1)
--------->
SPL7
<------
tgattcgatcgattttgggcggcggagctaaactcgccggtcaaaaggttagaatcggtggttgggttaaaaccggaagacagcaagggaaagggacttt
26766200
<--------
P
<---------
RAP2.6(2)
<---------
WOX13(1)
<---------
ANAC58
<---------
TOE1(3)
<-------
GAMYB
<---------
YAB1
<---------
ANAC58
<---------
TOE2(3)
--------->
GLK1(1)
<---------
DEAR3(2)
<---------
TOE1(3)
--------->
GLK1(2)
--------->
MYB55(2)
--------->
MYB52(1)
--------->
ARR14(2)
<---------
MYB46(3)
<---------
DOF5.7(2)
<---------
ARR11(1)
--------->
MYB52(2)
<---------
TOE2(3)
<---------
ARR14(2)
<------
MYB46(1)
<---------
TOE1(3)
<-----------
ARR10
<------
MYB83
<---------
ANAC58
------->
TEIL
<---------
TOE2(3)
------>
ZmHOX2a(2)
<---------
ANAC58
<---------
ARR14(1)
--------->
ARR11(3)
<---------
ANAC58
----------
DOF2
<---------
ANAC58
<---------
AtMYB61
<---------
YAB1
--------->
MYB111(1)
--------
ANAC58
<---------
ANAC58
--------->
LBD16
<---------
CCA1(2)
<---------
AtMYB61
--------
ANAC58
<---------
MYB46(3)
<-----------
RAV1(2)
<----------
DOF2
<--------
P
<-
----
DOF2
--------->
DOF5.7(2)
<---------
CCA1(2)
<-------
TEIL
<---------
ARR11(3)
<---------
ANAC58
tgctttccttgaggttaacgatgggtcttgtccagcgaatctccaggttatggttgattcatctctttatgatctctctaggttggttgcgactggaact
26766300
---------->
DOF2
<---------
MYB46(3)
<------
MYB46(1)
<---------
ANAC46
<------
MYB83
--------->
ALFIN1
<---------
MYB52(1)
<---------
ANAC46
--------->
LBD16
<---------
ANAC58
--------->
ANAC46
--------->
ATHB12
<---------
HSFB2a(2)
<---------
MYB46(3)
--------->
HSFB2a(2)
<---------
YAB1
<---------
ZAT6
<---------
LBD16
--------->
At5g28300
<-----------
RAV1(1)
------>
ZmHOX2a(1)
<---------
ANAC46
<---------
ANAC58
<---------
At5g28300
<---------
ARR14(2)
<---------
At4g35610
<---------
DEAR3(1)
<-----------
GT1
<---------
GLK1(2)
<---------
TOE1(3)
--------->
At4g35610
<---------
LBD16
--------
ZAT6
--------->
KAN4(2)
<---------
TOE2(3)
<---------
At4g35610
<---------
WOX13(1)
tgtgttactgttgatggagttttgaagattcctccggaaggtaaaggtttgaagcagagtattgagcttagcgttgagacggtgattgcggtgggaactg
26766400
--------->
At4g35610
<------
ZmHOX2a(1)
------->
TEIL
--------->
ZAT6
<---------
HSFB2a(2)
------
<---------
ARR14(2)
--------->
HSFB2a(2)
<------
--------->
ARR14(2)
----------->
RAV1(2)
<---------
HSFC1(1)
---------
--------->
ANAC55(2)
--------->
WRKY12
--------->
HSFC1(1)
<--------
<---------
ANAC55(2)
--------->
WRKY38(1)
>>>>>>>
ZML2
------>
ZmHOX2a(2)
===========================
HOX2a_HOX2a
------>
ZmHOX2a(1)
--------->
REM1(1)
<---------
ARR11(3)
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
--------->
LBD16
<----------
DOF2
===================
HOX2a_HOX2a
ttgatccgactacgtatccgcttcctaagactaagttgactcctgagtttctcagagatgtgcttcatcttcgttctaggactaacttgatctcagcagt
26766500
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AGI:
At1g70980.1
Description:
SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding. Identical to Asparaginyl-tRNA synthetase, cytoplasmic 3 (SYNC3) [Arabidopsis Thaliana] (GB:Q9SSK1); similar to SYNC1 (EMBRYO DEFECTIVE 2755), ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G56680.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72488.1); similar to hypothetical protein OsI_001933 [Oryza sativa (indica cultivar-group)] (GB:EAY74086.1); similar to hypothetic
Range:
from: 26766001
to: 26768285
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.