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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----
-----
-----
<----
-----
<----
<---------
ANAC58
------>
MYB46(1)
<---------
ANAC58
------>
MYB83
--------->
TOE2(3)
------
---------
MYB52(1)
<---------
MYB59
--------->
TOE1(3)
<---------
WOX13(1)
ccattacttctacatactataccaaattcaaaatttagaactacctattttgtagactaaaactttctcaagcttaaattgtttcttgatagactaaata
26145100
<-------
MYC3
------->
MYC3
--------->
DAG2
--------->
AHL20(2)
--------->
TGA1a
---------->
DOF2
----------->
RAV1(2)
<---------
TGA1a
-----
AHL20(1)
<------
NtERF2
===============
---->
AHL20(1)
------>
NtERF2
--------->
ANAC46
===============
---->
AHL20(2)
<---------
ATERF1(1)
--------->
ANAC58
===============
-----
AHL20(2)
<---------
RAP2.6(2)
--------->
ANAC58
<---------
ZAT18
---->
ARR11(3)
--------->
RAP2.3(1)
--------->
ANAC46
--------->
At4g35610
-----
ARR11(3)
<------
MYB83
--------->
ATERF1(1)
--------->
AtMYB61
<---------
At4g35610
--->
AHL20(2)
<------
MYB46(1)
<---------
ATERF1(1)
<-----------
GT1
------->
TEIL
<------
tattatcccaaggtaaagttggtgtttatgtgtgtttgaaggcgcctgaaaaaaatagaaaccacacgactcgtcttgtatgtagctcacatgtgtcttt
26145200
<---------
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
ARR11(3)
<---------
DAG2
--------->
AHL20(1)
<----------
DOF2
<---------
At4g35610
<---------
AHL20(1)
<---------
ANAC58
--------->
At4g35610
--------->
AHL20(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<----------
DOF2
--------->
YAB1
<----
============
bZIP_DOF
<---------
AHL20(2)
<---------
ARR14(2)
--------->
AHL20(2)
<----
=================
bZIP_DOF
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
------
====
bZIP_DOF
--------->
ANAC46
--------->
ARR11(3)
----------->
RAV1(1)
<-----------
GT1
------
----
DOF2
--------->
ANAC58
<---------
ARR11(3)
--------->
PCF5
--------->
AHL20(2)
---------
gcctctttgctttttcatgccattaaatattaaatcttcagcggtttttggtccccaacaataaaaatatattttcttactatattctatagttcattaa
26145300
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
-----
TOE2(3)
--------->
AHL20(2)
<---------
AHL20(1)
--------
-----
YAB1
------>
MYB46(1)
--------->
AHL20(1)
---------
--->
AHL20(2)
------>
MYB83
----------->
GT1
----------->
GT1
--->
YAB1
<---------
MYB59
------------------------>
ANAC81
---------->
DOF2
-----
>
TOE2(3)
<-----------
GT1
<---------
YAB1
<---------
AHL20(2)
<---------
AtMYB61
---------->
DOF2
tattacattgaataaacctaatgttttttaatatgaaaaaccagaaaaataaaattgcattcggagttttggtcttgttttgaaaagaaaagaaaaaagt
26145400
----------->
GT1
<------------
CBF
<<<<<<<<<<<<<<<<<
LFY
--------->
AHL20(2)
------
--------->
AHL20(2)
--------->
WOX13(1)
----------->
TBP
<------
--------->
TOE2(3)
<---------
ATHB12
--------------->
AGL15
<---------
DAG2
->
DAG2
--------->
TOE1(3)
--------->
TOE2(3)
--------->
HSFB2a(2)
<----------
DOF2
->
DOF2
<---------
YAB1
<---------
ANAC55(2)
<---------------
AGL15
------>
ZmHOX2a(1)
---->
ALFIN1
<---------
TOE2(3)
----------->
GT1
<---------
HSFB2a(2)
<---------
ALFIN1
*
TSS
ggaagctagttgcattaacattaaacagtggcaaaaacgtaaatcattcactcactaagtttttctataaattgaactactcccctcctctgcttttt
cc
26145500
<---------
ICU4
<--------
HAHB4
--------->
YAB1
--------->
YAB1
<---------
ICU4
--------->
ANAC58
--------->
YAB1
--------->
ANAC46
--------->
YAB1
--------->
ANAC46
------>
MYB46(1)
--------->
GLK1(2)
------>
ZmHOX2a(1)
------>
MYB83
<---------
ARR14(2)
============================
HOX2a_HOX2a
<---------
ICU4
--------->
ARR14(2)
<-----------------
AGL1
--------->
HSFB2a(1)
<---------
GLK1(2)
---------->
ID1
<------
ZmHOX2a(2)
<---------
ATHB12
--------->
MYB52(1)
<---------
CCA1(2)
<----------
DOF2
<---------
ARR11(3)
<---------
YAB1
------>
MYB46(1)
--------->
ICU4
<-----------
GT1
--------->
ARR11(3)
--------->
ICU4
------>
CBF
----------->
RAV1(1)
<-----------
GT1
---------->
DOF2
--------->
ANAC58
-----
GT1
------>
MYB83
<---------
YAB1
<----------
DOF2
---------->
DOF2
<---------
HSFB2a(1)
<---------
aattctaaaccaaacaacagattctcataatcatctcttcttttttcctctttacgaaaagaagaaagatcaaaccttccaagtaatcattttctttctc
26145600
---------->
DOF2
----------->
GT1
<----------
ID1
--------->
ANAC46
<---------
ZAT6
------>
ZmHOX2a(2)
<---------------
AGL15
-
DOF2
<---------
ALFIN1
<---------
MYB59
--------->
ARR14(2)
---------->
DOF2
tctctcacacacacacattcactagttttagcttcacaaaatgtgatctaacttcatttacctatatgcaggtttacacaaaaagaaaaaagaacg
atgg
26145700
<-----------
HVH21
<---------
ANAC55(2)
===================================
MYC_MYB
--------->
ANAC55(2)
<---------
TGA1a
<---------
O2
--------->
O2
=================================
MYC_MYB
----------->
HVH21
<-----------
HVH21
--------->
ANAC55(1)
<-----------
TGA1
--------->
ANAC46
--------->
bZIP60(2)
===============
MYC_MYB
<---------
bZIP60(1)
<---------
ZAT18
======================================
MYC_MYB
--------->
ANAC58
========================================
MYC_MYB
<---------
bZIP60(2)
--------->
ANAC58
<---------
ANAC58
<---------
WRKY38(1)
<---------
ANAC58
<---------
WRKY45
<<<<<<<<<<
HY5
<-----------
HVH21
--------->
bZIP60(1)
<------
MYB46(1)
--------->
TGA2(1)
<------
MYB83
--------->
ANAC58
<---------
O2
<------
MYB83
--------->
O2
<---------
TGA2(1)
--------->
MYB59
--------->
TGA1a
<------
MYB46(1)
--------->
ANAC46
<--------
P
------->
GAMYB
<---------
ANAC55(2)
=========================
MYC_MYB
--------->
ANAC55(2)
--------->
ALFIN1
----------->
RAV1(1)
<---------
TGA1a
==========================
MYC_MYB
--------->
O2
<-------
GAMYB
--------->
bZIP60(2)
<-----------
STF1
<---------
AtMYB61
--------->
TGA1a
----------->
STF1
<------
ZmHOX2a(1)
<---------
ALFIN1
<---------
TGA2(2)
<------
NtERF2
<---------
WRKY12
----------->
TGA1
--------->
ARR14(2)
<---------
ANAC46
-
<---------
ATHB12
<---------
ATHB12
<---------
MYB46(3)
<---------
ALFIN1
==========================
MYC_MYB
<---------
LBD16
--------->
WRKY18(1)
<
<-----------
GT1
===============================
MYC_MYB
--------->
LBD16
--------->
ANAC58
<
<-----------
HVH21
-------->
P
----------->
HVH21
<---------
MYB46(3)
<---------
MYB46(3)
<----
ctcttgtcaccttcttgtttattgctacccttggagcaatgacgtcacatgtcaatggttacgccggaggaggttgggtcaacgcacacgccacattcta
26145800
--------->
LBD16
<---------
HSFB2a(2)
--------->
ANAC46
<---------
ATERF1(2)
--------->
ATERF1(2)
--------->
HSFB2a(2)
<---------
LBD16
<---------
ANAC58
<---------
YAB1
<---------
MYB46(3)
--------->
ALFIN1
---------
<---------
AtMYB61
--------->
TOE2(3)
<---------
ANAC46
---------->
ID1
--------->
MYB55(2)
--------->
HSFC1(2)
<-----------
GT1
<---------
MYB46(3)
--------->
HSFB2a(1)
---------->
DOF2
<-----------
GT1
-------->
ALFIN1
------>
NtERF2
<---------
HSFC1(2)
<----------
DOF2
<---------
GLK1(2)
---------
AtMYB61
<---------
ANAC58
--------->
ANAC58
--------->
ARR11(3)
---------
DEAR3(1)
----------->
GT1
------->
TEIL
--------->
ANAC58
<---------
ARR11(3)
-----
LBD16
<---------
ANAC58
<---------
ANAC58
--------->
ANAC46
<----------
DOF2
<----------
DOF2
cggtggtggtgatgcttccggcacaatgg
gtatatttccttgaaccttctctcacaagtcacaaggctttaaagctttcaagatttttcctttaccacaa
26145900
--------->
ANAC58
<----------
CDC5
--------->
ATERF1(1)
--------->
RAP2.3(1)
<------
NtERF2
<---------
ORA47(2)
<---------
RAP2.6(1)
<---------
DEAR4(2)
------>
NtERF2
<---------
ATERF1(1)
<---------
RRTF1(1)
<---------
ERF1
--------->
ANAC55(2)
<---------
RAP2.3(1)
--------->
ANAC58
<---------
RRTF1(3)
<---------
ANAC55(2)
<---------
DEAR3(1)
<---------
LBD16
<---------
RAP2.3(2)
--------->
CCA1(2)
<---------
RRTF1(2)
--------->
ARR11(1)
--------->
DEAR3(1)
--------->
ARR14(2)
<---------
RAP2.3(3)
<---------
ANAC58
<---------
ABI4(1)
<---------
ANAC58
<---------
ATERF1(1)
<-------
TEIL
--------->
ANAC46
--------->
ALFIN1
<---------
ALFIN1
--------->
ALFIN1
------>
MYB83
--------->
ANAC58
<
<------
ZmHOX2a(1)
--------->
GLK1(1)
-------->
P
------>
NtERF2
-
<-----------
RAV1(2)
--------->
ANAC58
------>
MYB46(1)
<
<---------
ANAC58
<---------
ARR14(2)
--------->
AtMYB61
--------->
ANAC58
<-------
GAMYB
<---------
ANAC46
--------->
TOE2(3)
--------->
MYB46(3)
--------->
ANAC58
>
TOE2(3)
<---------
ANAC58
<---------
ANAC46
--------->
DEAR3(2)
--------->
ANAC46
ttcttatgaaattttgggttgcag
gaggtgcttgtggatacggaaacctatatagccaaggctatggaaccaacacggcggcgctaagcacggctctatt
26146000
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AGI:
At1g69530.1
Description:
ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1). Identical to Expansin-A1 precursor (EXPA1) [Arabidopsis Thaliana] (GB:Q9C554;GB:Q38863); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.1); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin 3 [Populus tremula x Populus tremuloides] (GB:AAR09170.1); contains InterPro domain Expansin 45, endoglucanase-like (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A (InterPro:IPR005132); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain
Range:
from: 26145499
to: 26147159
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.