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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                           <------ZmHOX2a(2)
                                                                          <---------AGP1
                                                                          <---------ARR11(3)
                                                                          --------->AGP1
                                                                          <---------ARR14(2)
                                                                          --------->ARR14(3)
                                                                          <-----------ARR10
                                                                          <---------ARR14(3)
                                                                          --------->ARR14(2)
                                                                        ----------->ARR10
                                                                      <---------ZAT14
                                                                      --------->ZAT14
                                                                     --------->ALFIN1
                   --------->ANAC58                                  --------->AtLEC2
                   --------->ANAC58                       --------->ARR11(3)------>ZmHOX2a(2)
      ----------->GT1                                    =========================HOX2a_HOX2a
     <------ZmHOX2a(2)                                   ==========================HOX2a_HOX2a
    --------->ARR11(3)                                   <------ZmHOX2a(1)--------->ARR11(3)
    <---------ARR11(3)--------->WOX13(1)              --------->HSFB2a(2)<---------CCA1(2)   <------
-------ANAC58    <---------ANAC58                <---------MYB52(1)<---------ANAC58      ---------->ID1
-------ANAC46    <---------ANAC58             <---------LBD16      <---------ANAC58  <---------ANAC58
-------ANAC58    <---------ANAC46            =====================================HOX2a_HOX2a<------
->RAV1(1)     --------->TOE1(2)              ------>ZmHOX2a(1)     <---------ANAC46  <---------ANAC58
 
tcttgaagatcgaaaaacttgcgagcaatctgaagagacagcctcatcctccggtctctaggaccttgagccgtgcagatcttactatgcctgtcccttt  25851800
                                            <---------ALFIN1
                                  <---------ANAC58
                                  <---------ANAC58
                              <---------ANAC58                                   <------------------
 <---------At5g28300          <---------ANAC46                                  --------->AtLEC2
<---------WRKY18(1)           <---------At4g35610                        --------->ANAC58
<-----------GT1    ------->TEIL --------->ALFIN1                    --------->At4g35610
---DAG2           <-----------GT1<-------TEIL------->GAMYB <<<<<<<<<TBF1 --------->ANAC58
----DOF2------>ZmHOX2a(1)     <---------ANAC58      <---------YAB1  <---------At4g35610
 
ttttgaccgtccttctccattgaacctcttgtgaggtgcttccatcaacacacttctcattcttcttcttaagctcaagcttcttgcaaaatttccaagg  25851900
                              ----------->GT1
                            --------->At4g35610
                    --------->ARR11(3)
                    <---------ARR11(3)
                   --------->REM1(1)                                                      ----------
     ----------->RAV1(1)    <---------At4g35610                                 --------->GLK1(2)
<-------TEIL   --------->At4g35610                          <-------TEIL   --------->ANAC58
---WRI1        <---------At4g35610                       <------ZmHOX2a(1) --------->ANAC58     ----
 
agattcaacaacatttgctgctacatcttgctgctgtaacaagaattggtttatcaagaaggattcatcaaaactctcaagaaaatcggaagagaaagga  25852000
                 <---------AtMYB61                      ----------->GT1                          <--
>DOF2         --------->ICU4                      ---------->DOF2  <---------MYB46(3)      ---------
------>DOF2   <---------ZAT6     <----------DOF2<---------YAB1    <--------P             <------ZmHOX2a(2)
 
aaagaaggcgaagagtagtgatggtgagaattagggctttgaatgtgagtaatgaaagaaggaaacatggttgtttgatggggaatgaagggatcaaaga  25852100
                                                                 <---------HSFC1(2)
                                                                 <---------HSFB2a(1)
                                                                 --------->HSFC1(2)
                                                                 --------->HSFB2a(1)
                                                                <---------ARR14(2)
                                                                --------->ARR14(2)            <-----
                                                                <---------ARR11(3)       --------->ANAC58
                                                                <-----------ARR10        --------->ANAC58
                                                                --------->GLK1(2)    --------->ANAC58
                                                    <---------DOF5.7(2)              --------->ANAC58
                                                    --------->MYB52(1)       <----------DOF2  <-----
                                   <-------TEIL  --------->ANAC55(2)   <---------DAG2--------->ANAC46
---------HVH21              --------->TOE2(3)    <---------ANAC55(2)   <----------DOF2 ---------->DOF2
->DOF2                ----------->GT1           --------->MYB59<---------GLK1(2)  --------->ZAT14<--
 
ggtcatagccattggtatctagagaaggaaacattagattcaagagagaaataggtaacgaaaacagaatcttccttttcctttcttcactcaagccctt  25852200
                                                                               --------->AHL20(2)
                                                                               <---------AHL20(2)
                                                                            <---------AHL20(1)
                                                                            <---------ARR11(3)
                                                                            --------->ARR11(3)
                                                                            --------->AHL20(1)
                                                                          --------->AHL20(1)
                   <---------ANAC58                                       --------->ARR11(3)
                <---------ZAT18                                           <---------ARR11(3)
  *TSS  <---------MYB46(3)<----------DOF2                         ----------->GT1
 --------->ATHB12  <---------ANAC58     <---------STY1(2)     --------->AHL20(1)
<-------TEIL <---------ANAC58      <-------TEIL               <---------ARR11(3)
-----DOF2    <---------ANAC46     <--------P                  --------->ARR11(3)     <--------------
----MYB52(1) <---------ANAC58---------->DOF2   <------ZmHOX2a(1)<------------CBF    ---------->DOF2
-------MYB46(3) --------->ZAT18<---------TOE2(3)          ---------->DOF2 <---------AHL20(1)
 
tggttcattagtggttgtgtgtgcttgtgctataaaggttgatagctagaggaagatggacaaaagatattgtagaaaatatttttttaaagtactatat  25852300
                                                 --------------->AtSPL8
                                           --------->ARR11(3)
                                           <---------AHL20(1)
                                           --------->AHL20(1)
                                           <---------ARR11(3)
                                          --------->CCA1(1)
                                    ----------->GT1
                                    <---------ANAC55(2)
                                    <---------ANAC58
                                    --------->ANAC55(2)
                                    <---------ANAC46
                                    <---------HSFB2a(2)
                                    --------->HSFB2a(2)
                                    <---------ANAC58                  ---------->DOF2
              --------->ANAC46--------->ZAT6  <----------DOF2   ----------->GT1                    <
   <----------DOF2      --------->ZAT6    --------->RVE1(1)<---------AHL20(2)                     <-
-AtSPL8<-----------GT1<-----------GT1--------->LBD16       --------->AHL20(2)   ----------->GT1 ----
 
gtttttcttttaactatacatcatataactctatcacttccgtaaatatcttttagtactatttaaatagaaataaagagagatggtattttctaatatg  25852400
          <---------MYB52(1)
         <-------GAMYB
        <---------MYB46(3)
        --------->MYB52(2)
     <------MYB46(1)                     <-------GAMYB
     <------MYB83                     <------MYB83
    --------->MYB59                   <------MYB46(1)
<------MYB46(1)                     <---------MYB52(1)    <---------------AGL15
<------MYB83                        <--------P   -------->P
<---------MYB46(3)                 <-------GAMYB ------>MYB83                          --------->ALFIN1
---------AtMYB61                  <---------DEAR3(2)    <---------At4g35610           --------->ALFIN1
--------WOX13(1)                  <---------MYB46(3)    --------->At4g35610        <-----------RAV1(2)
----->ATHB12                   ------>ZmHOX2a(1) ------>MYB46(1)--------->DAG2 ---------->DOF2
 
gattggttcggtcgttactaatatggattagctccttcggttggggttaccctaccttctgcttcaaaaggttgtccaaaacaaaagcagggggggaaca  25852500
                                   <---------TOE2(3)
                                <---------YAB1
                             <---------YAB1                           <---------CCA1(1)
                           <---------ICU4                             <---------RVE1(1)
                           <--------HAHB4                           <<<<<<<<<RAP2.2
                          <---------YAB1                     <---------AHL20(2)
                          --------->ICU4                  ----------->GT1
                        --------->YAB1             --------->AHL20(2)<---------ARR11(3)
                 <-------TEIL--------->ICU4        <---------AHL20(2)--------->ARR11(3) <---------AHL20(2)
      <----------DOF2<----------DOF2  ---------->DOF2    <---------AHL20(2)            --------->YAB1
 
tggctaatgcttttgttagattcactttcattattattaatgaaagttttcaatttatatttagttaatttagatatttcacaaaaactattaaaactat  25852600
                                                           <---------GLK1(2)
        --------->YAB1                    <---------------AtSPL8 <----------DOF2
       <---------YAB1               <---------YAB1         --------->ARR14(2)
    ------>ZmHOX2a(2)            --------->AHL20(2)        <---------ARR14(2)
<---------YAB1                 <----------DOF2     --------->ARR14(2)                --------->YAB1<
 
aacatgatcgatgataagttttggtatatatcatcttttaatattgtggaacagaatacacatattcgctttgaataacatttactgaacataataccaa  25852700
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AGI:  At1g68800.1   
Description:  BRC2/TCP12 (BRANCHED2); transcription factor. similar to TCP1 (TCP family transcription factor 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G67260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42083.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:  from: 25850729    to: 25852203    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.