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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(2)
<---------
AGP1
<---------
ARR11(3)
--------->
AGP1
<---------
ARR14(2)
--------->
ARR14(3)
<-----------
ARR10
<---------
ARR14(3)
--------->
ARR14(2)
----------->
ARR10
<---------
ZAT14
--------->
ZAT14
--------->
ALFIN1
--------->
ANAC58
--------->
AtLEC2
--------->
ANAC58
--------->
ARR11(3)
------>
ZmHOX2a(2)
----------->
GT1
=========================
HOX2a_HOX2a
<------
ZmHOX2a(2)
==========================
HOX2a_HOX2a
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
WOX13(1)
--------->
HSFB2a(2)
<---------
CCA1(2)
<------
-------
ANAC58
<---------
ANAC58
<---------
MYB52(1)
<---------
ANAC58
---------->
ID1
-------
ANAC46
<---------
ANAC58
<---------
LBD16
<---------
ANAC58
<---------
ANAC58
-------
ANAC58
<---------
ANAC46
=====================================
HOX2a_HOX2a
<------
->
RAV1(1)
--------->
TOE1(2)
------>
ZmHOX2a(1)
<---------
ANAC46
<---------
ANAC58
tcttgaagatcgaaaaacttgcgagcaatctgaagagacagcctcatcctccggtctctaggaccttgagccgtgcagatcttactatgcctgtcccttt
25851800
<---------
ALFIN1
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<------------------
<---------
At5g28300
<---------
ANAC46
--------->
AtLEC2
<---------
WRKY18(1)
<---------
At4g35610
--------->
ANAC58
<-----------
GT1
------->
TEIL
--------->
ALFIN1
--------->
At4g35610
---
DAG2
<-----------
GT1
<-------
TEIL
------->
GAMYB
<<<<<<<<<
TBF1
--------->
ANAC58
----
DOF2
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
YAB1
<---------
At4g35610
ttttgaccgtccttctccattgaacctcttgtgaggtgcttccatcaacacacttctcattcttcttcttaagctcaagcttcttgcaaaatttccaagg
25851900
----------->
GT1
--------->
At4g35610
--------->
ARR11(3)
<---------
ARR11(3)
--------->
REM1(1)
----------
----------->
RAV1(1)
<---------
At4g35610
--------->
GLK1(2)
<-------
TEIL
--------->
At4g35610
<-------
TEIL
--------->
ANAC58
---
WRI1
<---------
At4g35610
<------
ZmHOX2a(1)
--------->
ANAC58
----
agattcaacaacatttgctgctacatcttgctgctgtaacaagaattggtttatcaagaaggattcatcaaaactctcaagaaaatcggaagagaaagga
25852000
<---------
AtMYB61
----------->
GT1
<--
>
DOF2
--------->
ICU4
---------->
DOF2
<---------
MYB46(3)
---------
------>
DOF2
<---------
ZAT6
<----------
DOF2
<---------
YAB1
<--------
P
<------
ZmHOX2a(2)
aaagaaggcgaagagtagtgatggtgagaattagggctttgaatgtgagtaatgaaagaaggaaacatggttgtttgatggggaatgaagggatcaaaga
25852100
<---------
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFC1(2)
--------->
HSFB2a(1)
<---------
ARR14(2)
--------->
ARR14(2)
<-----
<---------
ARR11(3)
--------->
ANAC58
<-----------
ARR10
--------->
ANAC58
--------->
GLK1(2)
--------->
ANAC58
<---------
DOF5.7(2)
--------->
ANAC58
--------->
MYB52(1)
<----------
DOF2
<-----
<-------
TEIL
--------->
ANAC55(2)
<---------
DAG2
--------->
ANAC46
---------
HVH21
--------->
TOE2(3)
<---------
ANAC55(2)
<----------
DOF2
---------->
DOF2
->
DOF2
----------->
GT1
--------->
MYB59
<---------
GLK1(2)
--------->
ZAT14
<--
ggtcatagccattggtatctagagaaggaaacat
tagattcaagagagaaataggtaacgaaaacagaatcttccttttcctttcttcactcaagccctt
25852200
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
AHL20(1)
--------->
AHL20(1)
<---------
ANAC58
--------->
ARR11(3)
<---------
ZAT18
<---------
ARR11(3)
*
TSS
<---------
MYB46(3)
<----------
DOF2
----------->
GT1
--------->
ATHB12
<---------
ANAC58
<---------
STY1(2)
--------->
AHL20(1)
<-------
TEIL
<---------
ANAC58
<-------
TEIL
<---------
ARR11(3)
-----
DOF2
<---------
ANAC46
<--------
P
--------->
ARR11(3)
<--------------
----
MYB52(1)
<---------
ANAC58
---------->
DOF2
<------
ZmHOX2a(1)
<------------
CBF
---------->
DOF2
-------
MYB46(3)
--------->
ZAT18
<---------
TOE2(3)
---------->
DOF2
<---------
AHL20(1)
tgg
ttcattagtggttgtgtgtgcttgtgctataaaggttgatagctagaggaagatggacaaaagatattgtagaaaatatttttttaaagtactatat
25852300
--------------->
AtSPL8
--------->
ARR11(3)
<---------
AHL20(1)
--------->
AHL20(1)
<---------
ARR11(3)
--------->
CCA1(1)
----------->
GT1
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC46
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
ANAC58
---------->
DOF2
--------->
ANAC46
--------->
ZAT6
<----------
DOF2
----------->
GT1
<
<----------
DOF2
--------->
ZAT6
--------->
RVE1(1)
<---------
AHL20(2)
<-
-
AtSPL8
<-----------
GT1
<-----------
GT1
--------->
LBD16
--------->
AHL20(2)
----------->
GT1
----
gtttttcttttaactatacatcatataactctatcacttccgtaaatatcttttagtactatttaaatagaaataaagagagatggtattttctaatatg
25852400
<---------
MYB52(1)
<-------
GAMYB
<---------
MYB46(3)
--------->
MYB52(2)
<------
MYB46(1)
<-------
GAMYB
<------
MYB83
<------
MYB83
--------->
MYB59
<------
MYB46(1)
<------
MYB46(1)
<---------
MYB52(1)
<---------------
AGL15
<------
MYB83
<--------
P
-------->
P
<---------
MYB46(3)
<-------
GAMYB
------>
MYB83
--------->
ALFIN1
---------
AtMYB61
<---------
DEAR3(2)
<---------
At4g35610
--------->
ALFIN1
--------
WOX13(1)
<---------
MYB46(3)
--------->
At4g35610
<-----------
RAV1(2)
----->
ATHB12
------>
ZmHOX2a(1)
------>
MYB46(1)
--------->
DAG2
---------->
DOF2
gattggttcggtcgttactaatatggattagctccttcggttggggttaccctaccttctgcttcaaaaggttgtccaaaacaaaagcagggggggaaca
25852500
<---------
TOE2(3)
<---------
YAB1
<---------
YAB1
<---------
CCA1(1)
<---------
ICU4
<---------
RVE1(1)
<--------
HAHB4
<<<<<<<<<
RAP2.2
<---------
YAB1
<---------
AHL20(2)
--------->
ICU4
----------->
GT1
--------->
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
<-------
TEIL
--------->
ICU4
<---------
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<----------
DOF2
<----------
DOF2
---------->
DOF2
<---------
AHL20(2)
--------->
YAB1
tggctaatgcttttgttagattcactttcattattattaatgaaagttttcaatttatatttagttaatttagatatttcacaaaaactattaaaactat
25852600
<---------
GLK1(2)
--------->
YAB1
<---------------
AtSPL8
<----------
DOF2
<---------
YAB1
<---------
YAB1
--------->
ARR14(2)
------>
ZmHOX2a(2)
--------->
AHL20(2)
<---------
ARR14(2)
<---------
YAB1
<----------
DOF2
--------->
ARR14(2)
--------->
YAB1
<
aacatgatcgatgataagttttggtatatatcatcttttaatattgtggaacagaatacacatattcgctttgaataacatttactgaacataataccaa
25852700
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AGI:
At1g68800.1
Description:
BRC2/TCP12 (BRANCHED2); transcription factor. similar to TCP1 (TCP family transcription factor 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G67260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42083.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:
from: 25850729
to: 25852203
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.