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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
RAP2.3(1)
<---------
DREB2C(1)
<---------
ATERF1(1)
<------
NtERF2
--------->
RAP2.6(2)
--------->
ATERF1(2)
------>
NtERF2
<---------
LBD16
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(1)
-----
GAMYB
--------->
DEAR3(2)
------>
At4g35610
-------
ZAT2
<---------
ATERF1(1)
-------
At4g35610
------>
ATERF1(1)
----
NtERF2
--------->
SPL7
------>
ZAT2
--------->
RAP2.3(2)
----->
MYB55(2)
------
MYB46(3)
------
ERF1
--------->
ATERF1(1)
------
DEAR3(2)
------
RAP2.3(1)
------
ATERF1(1)
-->
NtERF2
<---------
ATERF1(1)
-----
ANAC46
<---------
ATERF1(2)
-----
RAP2.6(2)
<---------
TOE1(2)
-----
RAP2.3(3)
<---------
TOE2(2)
-----
DEAR3(1)
--------->
DEAR4(2)
--------->
SPL7
-----
ATERF1(2)
<---------
ANAC46
<---------
SPL7
---->
ATERF1(2)
------>
NtERF2
--------->
TOE1(2)
-----
RAP2.3(2)
--------->
DEAR3(1)
==================
HOX2a_HOX2a
--->
ATERF1(1)
--------->
ATERF1(1)
===============================
HOX2a_HOX2a
--->
DEAR4(2)
------>
NtERF2
============================
HOX2a_HOX2a
--->
RAP2.3(1)
<------
NtERF2
------>
ZmHOX2a(2)
--------->
ALFIN1
-
NtERF2
<---------
ATERF1(1)
--------->
YAB1
--------->
ALFIN1
---
DEAR4(2)
<---------
DEAR3(1)
<---------
YAB1
<------
ZmHOX2a(1)
<----
---
ATERF1(1)
--------->
DREB2C(1)
--------->
ICU4
<---------
TOE2(3)
<---------
ANAC46
---
RAP2.3(1)
<---------
At4g35610
--------->
ANAC58
=====================================
HOX2a_HOX2a
--
DEAR3(1)
--------->
RAP2.3(1)
--------->
ANAC58
--------------->
AtSPL3
<------
ZmHOX2a(1)
-----
--
RAP2.3(2)
--------->
DEAR3(1)
<---------
LBD16
<---------
YAB1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
ggctggagacccggccgccgcttggagcattagctcggaagtttgatgatgatcgtacgttgaggaaaacagaggaggatgaggagtggagattgctctg
23895400
<---------
ANAC58
<---------
ANAC46
<---------
DEAR3(1)
<---------
ANAC58
<------
NtERF2
------>
NtERF2
<---------
MYB46(3)
--------->
ALFIN1
----------->
HVH21
<---------
AtMYB61
<-------
GAMYB
<---------
ABI4(1)
<------
NtERF2
--------->
ATERF1(1)
<---------
DEAR3(2)
<---------
DEAR4(2)
<---------
ATERF1(1)
<---------
MYB46(3)
<---------
ANAC46
<---------
DREB2C(2)
--------->
ALFIN1
<---------
AtMYB61
<---------
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
ABI4(1)
------>
NtERF2
<---------
RAP2.3(1)
------>
NtERF2
<---------
RRTF1(1)
<---------
DEAR3(1)
<---------
ANAC46
<---------
RAP2.3(2)
<------
NtERF2
<---------
RRTF1(2)
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR11(3)
<---------
LBD16
<
<---------
GLK1(1)
<---------
ZAT2
<------
NtERF2
<
<---------
ARR11(3)
--------->
ZAT2
--------->
LBD16
<
--------->
YAB1
--------->
At4g35610
<---------
YAB1
<-
<---------
ARR14(2)
<---------
LBD16
<---------
At4g35610
<---------
ARR14(2)
<-----
--------->
ARR14(2)
<---------
DEAR3(1)
--------->
ARR14(2)
--------->
ATERF1(1)
<--------
--------->
ALFIN1
--------->
GLK1(1)
--------->
CCA1(2)
--------->
ALFIN1
<------
ZmHOX2a(1)
--------->
YAB1
-----
ZAT14
<---------
HSFB2a(2)
<------
NtERF2
<------
ZmHOX2a(1)
<---------
DEAR3(1)
<---------
WOX13(1)
---->
ZAT14
--------->
HSFB2a(2)
--------->
LBD16
<---------
ARR14(2)
<---------
LBD16
<---------
ZAT6
----
ttctgaaggtggaacttctcgatgatatctcgttggcggagatagacggaggacccgagctgcggcggtggcggaggattgtgagtgttgaatgatgttg
23895500
--------->
ANAC46
<---------
LBD16
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
------>
ZmHOX2a(2)
<------
NtERF2
===================
HOX2a_HOX2a
---------
ANAC58
----------->
RAV1(2)
---------
ANAC46
------>
ZmHOX2a(1)
---------
ANAC58
======================
HOX2a_HOX2a
--------
LBD16
<------
MYB46(1)
--------->
At4g35610
------
RAV1(1)
<------
MYB83
--------->
ARR11(3)
---
RAV1(1)
--------->
ALFIN1
--------->
MYB59
<---------
ARR11(3)
--------
----->
ALFIN1
<------
ZmHOX2a(1)
<---------
ANAC46
------>
ZmHOX2a(1)
<-------
tggcggattctacggaggagggagtgagaagtgagaagattgagtcgagtgtgtttggtcctcctgctaatatgatctgagacagagatgctctgatttc
23895600
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
--------->
ATHB12
<---------
YAB1
----------->
GT1
<---------
ARR11(3)
<---------
ANAC46
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
LBD16
--------->
ARR11(3)
--------->
RVE1(1)
<---------
ANAC46
<---------
ARR11(3)
--------->
CCA1(1)
<---------
HSFC1(2)
--------
->
GLK1(1)
--------->
HSFB2a(2)
-------->
P
<---------
ANAC58
--------
--
GLK1(1)
<---------
HSFB2a(2)
<-----------
GT1
<---------
ANAC58
---------->
DOF2
tgagattttaggactgaaattgttctgaaaaatatcattgctttcttccat
tttttctcaaccagacgtttcgtggagtataagataaaaagaaacccta
23895700
<---------
YAB1
--------->
ATHB12
--------->
ICU4
------
<---------
YAB1
--------->
ARR11(3)
-------
->
TOE1(3)
--------->
YAB1
<---------
TOE2(3)
--------
->
TOE2(3)
--------->
ICU4
---------->
DOF2
<---------
YAB1
---------->
DOF2
acaattgtgtttgatttgatagaatgatggtttttcaagttcaaaagagattgaacaagagtaagattgagataatgagagattgtttttgaaagaaaag
23895800
<---------
AHL20(2)
<---------------
AtSPL8
--------->
AHL20(2)
--------------->
AtSPL8
------>
ZmHOX2a(2)
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
ARR11(3)
<------
MYB46(1)
<---------
ARR11(3)
---------->
DOF2
<------
MYB83
--------->
ARR11(3)
<---------
TOE2(3)
<---------
AHL20(2)
----->
GT1
--------->
AGP1
<---------
TOE1(3)
<-----------
TBP
-->
DAG2
<---------
AGP1
<-----------
TBP
--------->
ARR11(3)
--------->
ANAC58
-->
DOF2
---------->
DOF2
*
TSS
---------->
DOF2
<---------
ANAC58
--------->
ANAC58
tagaatttggtttttttgtttaaagatctatttaat
gggtttttaaagtttagaaagagcttgtacatatttatagacttagacagatagacaaggaaaa
23895900
<--
<---------
TOE1(3)
---
<---------
ANAC58
<---------
TOE2(3)
<----
<---------
ANAC58
<---------
AHL20(2)
-----
<-----------
TBP
<---------
DAG2
<---------
AHL20(2)
------
--------->
DAG2
<----------
DOF2
<----------
DOF2
--------->
MYB52(1)
---------->
DOF2
<---------
GLK1(1)
<----------
DOF2
<<<<<<<<<
TBF1
---------->
DOF2
--------
caaaccagaaaggttgttttatagatttcacatggacgctttgactttttcttgttgatttcttcttcttttatttaaagtttgccaaacgattttcatc
23896000
------->
GAMYB
--------->
YAB1
<--------
HAHB4
<---------
MYB55(2)
--------->
YAB1
--------->
MYB46(3)
<---------
ICU4
------>
MYB46(1)
--------->
ATHB12
-------
YAB1
------>
MYB83
<---------
ATHB12
------
------>
ICU4
-------->
P
--------->
WOX13(1)
------
-----
ICU4
<-----------
GT1
<-----------
GT1
--------->
YAB1
---->
YAB1
<---------
MYB59
<---------
YAB1
<---------
YAB1
--->
ICU4
--------->
TOE2(3)
<---------
ZAT6
--------->
AtLEC2
->
YAB1
<-----------
GT1
--------->
TOE2(3)
--------->
YAB1
--------->
ICU4
atgattttgctacaaggtttctactctgagataatacaagtagataccttatttccaaccacaattctagtgttattaatcatttcatgctaattataag
23896100
<---------
CCA1(2)
<---------
AHL20(2)
--------->
ANAC55(2)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
YAB1
<---------
ARR11(3)
<---------
YAB1
<---------
ICU4
<---------
CCA1(2)
<---------
ICU4
--------->
ZAT14
<---------
ARR11(3)
<----------
DOF2
--------->
YAB1
<---------
ZAT14
--------->
ARR11(3)
<-----------
GT1
<---------
ATHB12
--->
ANAC58
<---------
ANAC55(2)
<---------
ARR11(3)
--------->
ICU4
--->
ANAC58
<-------
TEIL
<---------
AHL20(1)
<---------
AtLEC2
--------->
YAB1
cactatactcatgatacatatctatatctatgagattgtatcaatatacttttctcttgcattttgcataaattcttctactaatcatgaaaattaatag
23896200
<---------
YAB1
--------->
ATHB51
<---------
ICU4
-------->
ATHB1
-------->
HAHB4
<--------
HAHB4
<---------
ATHB12
--------->
ICU4
<---------
CCA1(2)
<---------
AHL20(2)
<---------
RVE1(1)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
DAG2
--------->
ARR11(3)
<---------
MYB59
<----------
DOF2
<---------
WOX13(1)
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
<---------
YAB1
--------->
AHL20(2)
------->
GAMYB
<---------
CCA1(1)
<-----------
GT1
--------->
YAB1
--------->
MYB52(1)
--------->
AHL20(2)
<---------
YAB1
<---------
YAB1
<---------
YAB1
--------->
TOE2(3)
--------->
YAB1
<---------
ATHB51
---------
agtctatgattttatttgctttattttagaatgtttttttcattagttaacagactatgatagatatttatatctaattattaccgaatataaatgattt
23896300
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AGI:
At1g64380.1
Description:
AP2 domain-containing transcription factor, putative. Identical to Ethylene-responsive transcription factor ERF061 (ERF061) [Arabidopsis Thaliana] (GB:Q9C7W2); similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65814.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471)
Range:
from: 23894309
to: 23895836
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.