Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ------>MYB83              ------>MYB46(1)            --------->AtMYB61            <---------MYB59    --------->CCA1(2)    --------->GLK1(1)   --------->ARR11(3)                              --------->ZAT6   --------->ARR14(2)                         --------->ANAC46   <---------ARR14(2)                         --------->ANAC58         <---------HSFB2a(2)  <------ZmHOX2a(1)                  <-----------ARR10                 --------->HSFB2a(2) ---------TOE1(3)          --------->YAB1     --------->ANAC58   --------->ARR11(3)          <------- ---------TOE2(3)----------->RAV1(1) --------->ARR14(2)          <---------GLK1(2)     --------->TOE2(3) ---ARR14(2)------->GAMYB<---------ARR11(3)   --------->ANAC55(1)<---------ARR11(3)--------->TOE2(3) -->ZAT18  --------->MYB46(3)       <---------CCA1(2)           <---------RVE1(1)  --------->TOE1(3)   ctaaggatatacaaccaaacaacacaaaatcatatatcaaatctccacaagtaatactaaacacagagattttctaaaaatcaaaccttcattaactttg  23427100                                           --------->YAB1                                          <---------YAB1                                      <----------DOF2                              <---------ARR11(3)                                  <---------WOX13(1)                --------->AHL20(2)    <---------DAG2        --------->ZAT14--------->ZAT18      --------->YAB1          <-----------ARR10           --------->At5g28300  --------->ICU4 ---DOF2     --------->ATHB12 --------->GLK1(2)      <---------REM1(2)  ---------->DOF2   gcagacaatagaaattgattaaaaaccctcaaaatctaagctttatcatgaaatctacacagtaaacaaacccaaaatgccctaattgatcaagttttca  23427200                                                                                 <---------TOE2(3)                                                                             <------ZmHOX2a(1)                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                      --------->HSFB2a(2)                                  --------->AHL20(2)                  <---------ANAC55(2)          <-                               ----------->GT1                        --------->ANAC55(2)         <--                              ----------->GT1                   <---------ARR11(3)                <--                        <---------HSFB2a(2)                     --------->ARR11(3)                ---                        --------->HSFB2a(2)          ------->GAMYB  --------->MYB52(1)           <---          <----------DOF2  <------ZmHOX2a(1)       --------->At4g35610<---------HSFB2a(2)        ----   --------->TOE1(3)<---------ARR14(2)            ----------->RAV1(1)<---------LBD16  --------->MYB59   --------->TOE2(3)--------->ARR14(2)  ---------->DOF2   ----------->GT1---------->DOF2   <---------   tcaaacctaaaactttttagcaaattcgaggagggtttaaatcaaagagtgtcaacagaagagtaaaatcttacggaaaggataagattaggcatgttgc  23427300         <---------ATHB12    --------->ANAC58    --------->ANAC58            <------NtERF2  <---------ANAC46             ------>NtERF2 -----NtERF2<---------ANAC46  <---------ANAC46 -------RAP2.6(3)            --------->ATERF1(1)                                                    < ---------HVH21              <------NtERF2                         <---------ANAC46                 < --->NtERF2 <---------ANAC58<---------RAP2.3(1)                   ------>NtERF2                    -- ------ATERF1(2)           <---------DEAR3(1)                 <---------ANAC58           <-------TEIL ----->DEAR3(1)           --------->ATERF1(1)                 <---------ANAC58 <---------ALFIN1 ----- --RAV1(1)  <---------ANAC58<---------ATERF1(1)           <----------DOF2   <-----------GT1     <----   cgtcgcgagcaatgacttgaagtctggagacggcgtcttcgtttccaacgatatcgactactttgctcggcctgtatttctccacccatggttcattgta  23427400                                                                   ----------->ARR10                                                             --------->SPL7                                                            --------->MYB52(1)           <---------TOE2(3)                               ------>NtERF2       <---------MYB52(1)          <---------YAB1         ----------->HVH21 ----------->HVH21              --------->ICU4            --------->DEAR3(1) -----------TGA1            ------>NtERF2                 <---------ETT(1) -----------HVH21          --------->RAP2.6(2)        --------->HSFB2a(1) ------->ANAC46            --------->ANAC46           <---------HSFB2a(1)                     ------- ---->ARR14(2) <-------TEIL--------->ANAC58           <---------HSFC1(2)                     *TSS  <- -----ARR14(2)<--------P   --------->ANAC58         <---------GLK1(2) --------->CCA1(2)<---------ANAC46   tccgtcaccggtagaggttgatgaagaagacgccattatcagtcggaagagaaggaatctccgaccggtgagatttggagggttttctggtttggaggga  23427500            ------>ZmHOX2a(2)           <------ZmHOX2a(2)            --------->YAB1        ---------->DOF2                     <--          --------->ARR14(2)            <---------ICU4      --------->YAB1   <---------ARR14(2)  <---          --------->GLK1(2)             <--------HAHB4     ----------->TBP   --------->ARR14(2)  ----          <---------ARR14(2)       ------------>CBF      <---------------AGL15       --------->ANAC58   <---------ANAC58          <----------DOF2     ---------->DOF2       --------->TOE1(2)     --------   <---------ANAC58<---------TOE2(3)    --------->ATHB12 --------------->AGL15       --------->ANAC58 ---->GT1<------ZmHOX2a(1)<-----------GT1     --------->TOE2(3)        --------->TOE2(2)---------->DOF2 -----------CBF    <---------TOE1(3)   <---------ATHB12 ----------------->AGL3      ------->TEIL<----   aaattgctggaggatccgattaagggttttacttttatacaatcatttcattaaagggcctataaaaagaaaacatccgaattctgtacccaaagtatat  23427600                    <----------DOF2                 ------>NtERF2                                                                    ---                 --------->LBD16                                                                 ----         ---------->DOF2                                      --------->AHL20(2)  --------->AHL20(1)   <-----------GT1 <---------DAG2                     <------MYB46(1)             <---------AHL20(1) -------AHL20(2)--------->ANAC58                      <------MYB83                --------->AHL20(2) ------AHL20(2) --------->DEAR3(1)                    <---------DEAR3(2)          <---------AHL20(2) ----->AHL20(2) --------->ANAC58                  --------->ZAT2   <---------AHL20(2)   <---------YAB1 ->AHL20(1)     <---------ALFIN1                  <---------ZAT2  --------->AHL20(2)  --------->YAB1 -----AHL20(2) <---------LBD16      <-----------GT1  --------->MYB59 <---------YAB1  <---------YAB1   taatttcactatatagccccgccttttaaaactcgttgttacatttatgcccagttcggttcgataaatttaaaattggtctattttattataaatagat  23427700                                <---------AHL20(2)                               <---------YAB1                           --------->AHL20(2)    -------                             <---------ICU4                           ----------->GT1    <---------AHL20(2)                         <---------AHL20(2)                         ---------->DOF2      --------->AHL20(2)                         <---------AHL20(1)                       <------MYB83  --------->ANAC55(1)                         --------->AHL20(2)                       <------MYB46(1)     --------->YAB1         --------->AtMYB61<---------AHL20(2)                    <--------P      --------->ANAC58 -------->GT1      --------->TOE2(3)                           <-------GAMYB    --------->ANAC46 ------->GT1       --------->TOE1(3)     ----------->GT1      <---------MYB46(3)--------->ANAC58   gggaaaaaaaaccaaaacaaacctcaattaatttttatttggacgtttaatactcaattgtttttggttggaaagtaaatacacgaaataataaaatcat  23427800                                                             <---------AHL20(2)                                                            <---------AHL20(1)                                                            --------->AHL20(1)                                                            --------->AHL20(2)                  --------->AHL20(2)                     --------->YAB1                  <---------AHL20(2)          ------>ZmHOX2a(2)                  <---------AHL20(1)         <------ZmHOX2a(2)                  --------->AHL20(1)        --------->ARR11(3)               <---------ICU4               <---------ARR11(3)              <---------ATHB12         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ICU4      --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              <  --------->AHL20(2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                <-  <---------AHL20(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <-  --------->AHL20(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---  <---------AHL20(2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <-----------GT1    <-------- -->YAB1      <---------ATHB51xxxxxxxxxxxxxxxx>smallRNA(i)  <---------AHL20(2)             --------->AHL20(2)   acaatttaatacacaaataattaattgttgttattttcatactcacgatctcacaacaaaaataaaattccaattttactcttaccatctcaattaacta  23427900                           --------->AHL20(2)                       --------->AHL20(2)        --------->AHL20(1)                       <---------AHL20(2)        --------->AHL20(2)                       --------->YAB1            <---------AHL20(2)                   --------->AHL20(2)           <---------AHL20(2)               <---------AHL20(2)               --------->AHL20(2)            <---------AHL20(2)              <---------AHL20(2)            <---------AHL20(1)              --------->AHL20(1)                                     <-            --------->AHL20(1)              <---------AHL20(1)                                     --      --------->YAB1<---------ICU4          --------->AHL20(2)                                    <--     <---------YAB1<---------AHL20(2)      --------->AHL20(2)                                  <-----  <---------AHL20(2)--------->YAB1      --------->ICU4                                         <----- ---------YAB1--------->YAB1          --------->YAB1                                          ------- --------AHL20(1)--------->YAB1  <---------AHL20(2)                                      <---------YAB1 --------AHL20(2)--------->TOE2(3)   --------->AHL20(2)<---------TOE2(3)                <-----------GT1 ------YAB1 --------->AHL20(2)   --------->AHL20(2)   <-----------GT1             <---------AHL20(2) ---GT1  --------->AHL20(2)<---------AHL20(2)<---------AHL20(2)                   --------->AHL20(2)   ttattttttgataatataatattaattatataattttaaataaaaattaattttattaacattttagtttatggtctctaaaatttaaattttcattttt  23428000  Previous    Next  AGI:  At1g63160.1    Description:  replication factor C 40 kDa, putative. similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to replication factor C 40kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB69675.1); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 23425529    to: 23427493    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.