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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
AGP1
<---------
ARR14(2)
<-----------
ARR10
--------->
ARR11(3)
<---------
ARR11(3)
--------->
CCA1(1)
--------->
RVE1(1)
<---------
ATHB12
--------->
AHL20(2)
------>
MYB83
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AtLEC2
--------->
AHL20(2)
<---------
AGP1
--------->
TOE2(3)
--------->
ANAC46
---------->
DOF2
--------->
AHL20(2)
--------->
ARR14(2)
-----
ZAT6
--------->
ANAC46
<---------
ATHB12
--------->
ARR11(3)
<-----------
GT1
------>
GT1
------>
MYB46(1)
--------->
AHL20(2)
<-----------
ARR10
--------->
MYB52(2)
gttaaatactccatggaaccaaatcaaagtgaaacaagctcaataaataaaaaaaatctcatcgaagatctaatctaatttcattagttacaaaatgaaa
22269300
----------------->
AGL1
<---------
ANAC58
<---------
ANAC58
--------->
SPL7
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
ANAC55(2)
=======================
--------->
CCA1(2)
<---------
SPL7
=======================
---------->
DOF2
<---------
ANAC58
--------->
ARR14(2)
<------
ZmHOX2a(1)
<---------
WOX13(1)
--------->
ANAC55(2)
<---------
LBD16
<-
<---------
YAB1
------>
ZmHOX2a(2)
<---------
ARR14(2)
<---------
GLK1(1)
--------->
GLK1(2)
--------->
YAB1
--------------->
AtSPL3
---------->
DOF2
===================
<---------
TOE2(3)
--------------->
AtSPL8
<---------
ATHB12
===================
tgcgattaatgctaattgaaagataagaaaatggtgatccgtac
cat
tttgtgccgaatttgaacaatgaagcgatatcaggaaggagaagaatcgaatc
22269400
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(3)
<---------
At4g35610
--------->
At4g35610
<-----------
RAV1(1)
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
AGP1
--------->
AGP1
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
------>
ZmHOX2a(2)
<---------
AGP1
<---------
AGP1
----------->
ARR10
--------->
ARR14(3)
--------
<-------
TEIL
----------->
ARR10
--------
<--------
P
--------->
YAB1
<-------
============
HOX2a_HOX2a
---------
=============
HOX2a_HOX2a
<---------
DOF5.7(2)
<----------
--------
TOE1(2)
--------->
ICU4
<---------
TOE2(3)
--------->
DAG2
=============
HOX2a_HOX2a
--------->
YAB1
<---------
WOX13(1)
---------->
DOF2
============
HOX2a_HOX2a
--------->
GLK1(2)
--------->
ATHB12
---------->
DOF2
---------
gaaggtagatctg
ctgcaattaagatcttggatatataagaatcagaatttaggtgaacgattgattctatagatgaagaaagaaaaagtttttac
ctaa
22269500
<---
<-----
------
<-------
<--------
<--------
<--------
<---------
AtMYB61
<---------
DEAR3(1)
<------
NtERF2
<---------
RRTF1(1)
<---------
RRTF1(3)
<---------
RAP2.3(2)
<---------
DEAR3(1)
<---------
ANAC46
<---------
RAP2.3(3)
<---------
RRTF1(2)
<---------
ANAC58
<---------
RAP2.6(2)
--------->
AGP1
<---------
ANAC58
<------
ZmHOX2a(2)
---------->
DOF2
<---------
bZIP60(2)
<---------
ARR11(3)
--------->
ANAC58
--------->
At5g28300
<---------
LBD16
->
TOE2(3)
--------->
ANAC46
<---------
ZAT18
<---------
REM1(1)
->
TOE1(3)
--------->
ANAC58
--------->
ZAT18
<-----------
RAV1(1)
--
MYB59
<------
ZmHOX2a(2)
<---------
ANAC46
--------->
DAG2
<---------
ARR14(2)
--------->
ATERF1(1)
-------->
AG
<---------
ANAC58
---------->
DOF2
--------->
ARR14(2)
------>
NtERF2
-
GT1
--------->
At4g35610
<---------
ANAC58
<---------
ANAC46
--------->
GLK1(2)
<---------
RAP2.3(1)
-------->
AGL1
<----------
DOF2
<------
ZmHOX2a(1)
--------->
ZAT14
------>
ZmHOX2a(1)
<-------
GAMYB
acgagatcagatcaatttcaacttctttagcgtctacgaaagaggaaagactgcgtaaagttcacacggtgaagaatccttcgtgatgttgcggcggtcg
22269600
<---------
ZAT2
<---------
At4g35610
<------
NtERF2
--------->
At4g35610
<---------
DEAR3(2)
------>
NtERF2
<---------
ATERF1(1)
<---------
ATERF1(2)
----------------->
AGL1
--------->
DEAR3(1)
---
NtERF2
<---------
DEAR3(1)
----
DEAR3(1)
--------->
ATERF1(2)
--->
ETT(1)
--------->
DEAR4(2)
--------->
DAG2
----
HVH21
--------->
ATERF1(1)
---------->
DOF2
-
DEAR3(2)
<---------
LBD16
----------->
GT1
*
TSS
>>>>>>>>>
TBF1
-
MYB46(3)
<---------
At4g35610
--------->
ARR11(3)
<------
ZmHOX2a(1)
>>>>>>>>>
TBF1
-
SPL7
--------->
At4g35610
>>>>>>>>>
TBF1
----------->
GT1
----------->
GT1
--------------------
gagattgtcttattgggaagcttaatcgccggctgaagaagaaattgaaatggaaaatcgacgaagt
aggaaaaaggaatgaagaacagaagaagaagaa
22269700
------->
MYC4
<-------
MYC4
------->
MYC2
<-------
MYC2
<-------
MYC3
--------->
LBD16
--------->
LBD16
------->
MYC3
<---------
ANAC46
<---------
RAP2.6(2)
<---------
ANAC46
<---------
LBD16
<---------
LBD16
--------->
O2
<---------
SPL7
--------->
ARR14(2)
<---------
O2
<---------
ANAC58
--------->
TOE2(3)
<---------
TGA1a
<------------
CBF
--------->
MYB46(3)
--------->
TGA1a
<-------
TEIL
<---------
LBD16
--------->
YAB1
--------->
ANAC55(2)
----------->
GT1
--------->
MYB52(1)
<---------
ARR14(2)
<--------
ABF1
<---------------
AtSPL8
------------>
CBF
<---------
ANAC55(2)
--------->
ALFIN1
--------->
SPL7
----------->
GT1
---->
ANAC81
----------->
HVH21
------->
TEIL
<---------
ANAC58
>>>>>>>>>>>>>>>>>
LFY
<----------
DOF2
gacagagaggtatggatgacacgtgtaagactccatgaatgtggtacattgcttcgtaccgggagtaaccaatgttaaatccggcttagctttgattttt
22269800
--------->
REM1(1)
<-------
TEIL
----------->
GT1
<------
MYB83
--------->
ALFIN1
<------
MYB46(1)
<---------
ANAC46
--------->
MYB59
--------->
YAB1
<---------------
AtSPL8
<---------
bZIP60(2)
<---------
ANAC58
--------------->
AtSPL8
--------->
ICU4
<------
MYB83
--------->
AtMYB61
<---------
ICU4
<
>>>>>>>>>
SARD1
<---------
ALFIN1
--------->
ICU4
<
>>>>>>>>>
CBP60g
--------->
MYB46(3)
------>
MYB46(1)
<
<---------
AHL20(2)
<<<<<<<<<<<<<<<<<
LFY
------>
MYB83
<-------
TEIL
<-
<---------
AHL20(2)
<---------
ANAC58
--------->
MYB46(2)
<---------
ATHB12
<-------
TEIL
<---------
MYB52(1)
<------
MYB46(1)
--------->
MYB111(1)
<---------
ATHB51
<---------
DEAR3(2)
gagtttctcggtttttttatttgaaatttggtttcttatcgaccactggaattaggtacatcaaaaaccaaataatgatgtggttcattcttcggttcag
22269900
<---------
LBD16
<-----------
GT1
<---------
WRKY18(1)
---------->
DOF2
--------->
MYB46(3)
--------->
TOE2(3)
--------->
YAB1
--------->
REM1(1)
--------->
LBD16
<---------
ATHB12
---------
ANAC58
--------->
WRKY38(1)
--------->
WOX13(1)
----
---------
ANAC46
----------->
HVH21
------>
ZmHOX2a(2)
<---------
MYB52(1)
---------
ANAC58
--------->
WRKY12
<---------
ARR11(3)
--------->
GLK1(2)
--------
LBD16
<---------
MYB46(3)
--------->
ARR11(3)
----------->
RAV1(1)
<-----------
HVH21
<---
tttcgggttacatcaaagtggtttgaccggattaaacattgatcttcaatcaacaacaacaacaaaatgtccatataagtgtcaagtttctgttatttct
22270000
--------->
LBD16
--------->
ANAC46
--------->
DEAR3(1)
--------->
ANAC58
<---------
At4g35610
----------->
GT1
--------->
ANAC46
---------->
DOF2
<---------
LBD16
----------->
GT1
--------->
ANAC58
--------->
GLK1(1)
------->
TEIL
----->
At4g35610
<---------
ANAC55(2)
--------->
ARR14(2)
<---------
ZAT14
------
At4g35610
--------->
ANAC55(2)
---------->
DOF2
--------->
ZAT18
--------->
ZAT14
gctgaatggataaaaacttgttacataagcaatatacaaaacttagtaaacaaaggctaaacagaaatgcacaaatacttgcaatgcaccggactaaacc
22270100
<-------
<-------
--------
<-------
<-------
<-------
<---------
YAB1
<---------
ICU4
<-------
TEIL
<---------
AHL20(2)
--------->
ARR11(3)
<<<<<<<<<<<<<<<<<
LFY
--------->
AHL20(2)
---------->
DOF2
<---------
AHL20(2)
<---------------
AtSPL8
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
--------->
ANAC46
------->
TEIL
-
gagatttaaagaagctctagtgagatttaataagtgtgtttgattctttgtgtgatatata
gtacaagttacattggtcatacatgaatattaatacgtg
22270200
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AGI:
At1g60430.1
Description:
ARPC3 (actin-related protein C3); structural molecule. similar to unnamed protein product [Vitis vinifera] (GB:CAO69281.1); contains InterPro domain ARP2/3 complex, 21 kDa p21-Arc subunit; (InterPro:IPR007204)
Range:
from: 22268050
to: 22269667
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g60440.1
Description:
ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase. Identical to Pantothenate kinase 1 (COAA) [Arabidopsis Thaliana] (GB:O80765;GB:Q66GL8); similar to ATPANK2 (PANTOTHENATE KINASE 2), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT4G32180.2); similar to ATPANK2 (PANTOTHENATE KINASE 2) [Arabidopsis thaliana] (TAIR:AT4G32180.3); similar to ATPANK2 (PANTOTHENATE KINASE 2), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT4G32180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66085.1); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567); contains InterPro domain Fumble; (InterPro:IPR011602
Range:
from: 22270162
to: 22272908
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.